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| Enzyme | Recognition Site | Cut Count | Positions (bp) |
|---|---|---|---|
| AccIII | TCCGGA | 1 cut(s) | 56 |
| AcuI | CTGAAG | 2 cut(s) | 27, 219 |
| AfaI | GTAC | 1 cut(s) | 63 |
| AfiI | CCNNNNNNNGG | 1 cut(s) | 159 |
| AflIII | ACRYGT | 1 cut(s) | 133 |
| AgsI | TTSAA | 1 cut(s) | 238 |
| AhdI | GACNNNNNGTC | 1 cut(s) | 147 |
| AjiI | CACGTC | 1 cut(s) | 134 |
| AluBI | AGCT | 3 cut(s) | 89, 157, 197 |
| AluI | AGCT | 3 cut(s) | 89, 157, 197 |
| Alw21I | GWGCWC | 1 cut(s) | 249 |
| Aor13HI | TCCGGA | 1 cut(s) | 56 |
| ApeKI | GCWGC | 1 cut(s) | 313 |
| AseI | ATTAAT | 1 cut(s) | 348 |
| AsuHPI | GGTGA | 1 cut(s) | 151 |
| Bbv12I | GWGCWC | 1 cut(s) | 249 |
| BbvCI | CCTCAGC | 1 cut(s) | 21 |
| BbvI | GCAGC | 1 cut(s) | 300 |
| BglII | AGATCT | 1 cut(s) | 97 |
| BisI | GCNGC | 1 cut(s) | 314 |
| BlsI | GCNGC | 1 cut(s) | 315 |
| BmeRI | GACNNNNNGTC | 1 cut(s) | 147 |
| BmgBI | CACGTC | 1 cut(s) | 134 |
| BmsI | GCATC | 1 cut(s) | 172 |
| BpmI | CTGGAG | 1 cut(s) | 263 |
| Bpu10I | CCTNAGC | 2 cut(s) | 21, 158 |
| BsaWI | WCCGGW | 1 cut(s) | 56 |
| Bsc4I | CCNNNNNNNGG | 1 cut(s) | 159 |
| Bse1I | ACTGG | 1 cut(s) | 246 |
| BseAI | TCCGGA | 1 cut(s) | 56 |
| BseLI | CCNNNNNNNGG | 1 cut(s) | 159 |
| BseMII | CTCAG | 2 cut(s) | 12, 252 |
| BseNI | ACTGG | 1 cut(s) | 246 |
| BseXI | GCAGC | 1 cut(s) | 300 |
| BsgI | GTGCAG | 1 cut(s) | 63 |
| BsiHKAI | GWGCWC | 1 cut(s) | 249 |
| BsiSI | CCGG | 1 cut(s) | 57 |
| BslFI | GGGAC | 1 cut(s) | 135 |
| BslI | CCNNNNNNNGG | 1 cut(s) | 159 |
| BsmFI | GGGAC | 1 cut(s) | 135 |
| Bsp1286I | GDGCHC | 1 cut(s) | 249 |
| Bsp13I | TCCGGA | 1 cut(s) | 56 |
| Bsp143I | GATC | 1 cut(s) | 97 |
| BspCNI | CTCAG | 2 cut(s) | 13, 253 |
| BspEI | TCCGGA | 1 cut(s) | 56 |
| BsrI | ACTGG | 1 cut(s) | 246 |
| BssMI | GATC | 1 cut(s) | 97 |
| Bst4CI | ACNGT | 1 cut(s) | 145 |
| BstDEI | CTNAG | 3 cut(s) | 21, 158, 261 |
| BstKTI | GATC | 1 cut(s) | 100 |
| BstMBI | GATC | 1 cut(s) | 97 |
| BstMWI | GCNNNNNNNGC | 2 cut(s) | 17, 26 |
| BstNSI | RCATGY | 1 cut(s) | 68 |
| BstV1I | GCAGC | 1 cut(s) | 300 |
| BstX2I | RGATCY | 1 cut(s) | 97 |
| BstYI | RGATCY | 1 cut(s) | 97 |
| BtrI | CACGTC | 1 cut(s) | 134 |
| Csp6I | GTAC | 1 cut(s) | 62 |
| CviAII | CATG | 1 cut(s) | 65 |
| CviJI | RGCY | 8 cut(s) | 5, 11, 89, 157, 197, 208, 277, 313 |
| CviKI_1 | RGCY | 8 cut(s) | 5, 11, 89, 157, 197, 208, 277, 313 |
| CviQI | GTAC | 1 cut(s) | 62 |
| DdeI | CTNAG | 3 cut(s) | 21, 158, 261 |
| DpnI | GATC | 1 cut(s) | 99 |
| DpnII | GATC | 1 cut(s) | 97 |
| DriI | GACNNNNNGTC | 1 cut(s) | 147 |
| Eam1105I | GACNNNNNGTC | 1 cut(s) | 147 |
| Eco57I | CTGAAG | 2 cut(s) | 27, 219 |
| FaeI | CATG | 1 cut(s) | 68 |
| FaiI | YATR | 6 cut(s) | 15, 66, 114, 211, 213, 215 |
| FalI | AAGNNNNNCTT | 2 cut(s) | 159, 191 |
| FaqI | GGGAC | 1 cut(s) | 135 |
| FatI | CATG | 1 cut(s) | 64 |
| Fnu4HI | GCNGC | 1 cut(s) | 314 |
| Fsp4HI | GCNGC | 1 cut(s) | 314 |
| GluI | GCNGC | 1 cut(s) | 314 |
| GsuI | CTGGAG | 1 cut(s) | 263 |
| HapII | CCGG | 1 cut(s) | 57 |
| Hin1II | CATG | 1 cut(s) | 68 |
| HpaII | CCGG | 1 cut(s) | 57 |
| HphI | GGTGA | 1 cut(s) | 151 |
| Hpy166II | GTNNAC | 1 cut(s) | 131 |
| Hpy188I | TCNGA | 2 cut(s) | 102, 262 |
| Hpy188III | TCNNGA | 1 cut(s) | 57 |
| Hpy8I | GTNNAC | 1 cut(s) | 131 |
| HpyAV | CCTTC | 1 cut(s) | 336 |
| HpyCH4III | ACNGT | 1 cut(s) | 145 |
| HpyCH4IV | ACGT | 1 cut(s) | 133 |
| HpyCH4V | TGCA | 2 cut(s) | 44, 316 |
| HpyF10VI | GCNNNNNNNGC | 2 cut(s) | 17, 26 |
| HpyF3I | CTNAG | 3 cut(s) | 21, 158, 261 |
| HpySE526I | ACGT | 1 cut(s) | 133 |
| Hsp92II | CATG | 1 cut(s) | 68 |
| Kpn2I | TCCGGA | 1 cut(s) | 56 |
| Kzo9I | GATC | 1 cut(s) | 97 |
| LmnI | GCTCC | 2 cut(s) | 121, 244 |
| LpnPI | CCDG | 2 cut(s) | 70, 227 |
| Lsp1109I | GCAGC | 1 cut(s) | 300 |
| LweI | GCATC | 1 cut(s) | 172 |
| MaeII | ACGT | 1 cut(s) | 133 |
| MaeIII | GTNAC | 1 cut(s) | 139 |
| MalI | GATC | 1 cut(s) | 99 |
| MboI | GATC | 1 cut(s) | 97 |
| MboII | GAAGA | 1 cut(s) | 309 |
| MflI | RGATCY | 1 cut(s) | 97 |
| MhlI | GDGCHC | 1 cut(s) | 249 |
| MluCI | AATT | 1 cut(s) | 349 |
| MmeI | TCCRAC | 1 cut(s) | 52 |
| MnlI | CCTC | 4 cut(s) | 16, 90, 256, 261 |
| MroI | TCCGGA | 1 cut(s) | 56 |
| MseI | TTAA | 4 cut(s) | 279, 338, 348, 352 |
| MspA1I | CMGCKG | 1 cut(s) | 197 |
| MspI | CCGG | 1 cut(s) | 57 |
| MwoI | GCNNNNNNNGC | 2 cut(s) | 17, 26 |
| NdeII | GATC | 1 cut(s) | 97 |
| NlaIII | CATG | 1 cut(s) | 68 |
| NmuCI | GTSAC | 1 cut(s) | 139 |
| NspI | RCATGY | 1 cut(s) | 68 |
| PacI | TTAATTAA | 1 cut(s) | 352 |
| PkrI | GCNGC | 1 cut(s) | 315 |
| PshBI | ATTAAT | 1 cut(s) | 348 |
| PsuI | RGATCY | 1 cut(s) | 97 |
| PvuII | CAGCTG | 1 cut(s) | 197 |
| RsaI | GTAC | 1 cut(s) | 63 |
| RsaNI | GTAC | 1 cut(s) | 62 |
| SaqAI | TTAA | 4 cut(s) | 279, 338, 348, 352 |
| SatI | GCNGC | 1 cut(s) | 314 |
| Sau3AI | GATC | 1 cut(s) | 97 |
| SduI | GDGCHC | 1 cut(s) | 249 |
| SetI | ASST | 5 cut(s) | 91, 136, 159, 199, 328 |
| SfaNI | GCATC | 1 cut(s) | 172 |
| SgeI | CNNG | 7 cut(s) | 64, 69, 77, 146, 166, 179, 254 |
| Sse9I | AATT | 1 cut(s) | 349 |
| TaaI | ACNGT | 1 cut(s) | 145 |
| TaiI | ACGT | 1 cut(s) | 136 |
| TaqI | TCGA | 2 cut(s) | 295, 329 |
| TasI | AATT | 1 cut(s) | 349 |
| TatI | WGTACW | 1 cut(s) | 61 |
| Tru1I | TTAA | 4 cut(s) | 279, 338, 348, 352 |
| Tru9I | TTAA | 4 cut(s) | 279, 338, 348, 352 |
| TseFI | GTSAC | 1 cut(s) | 139 |
| TseI | GCWGC | 1 cut(s) | 313 |
| Tsp45I | GTSAC | 1 cut(s) | 139 |
| TspDTI | ATGAA | 1 cut(s) | 300 |
| VspI | ATTAAT | 1 cut(s) | 348 |
| XceI | RCATGY | 1 cut(s) | 68 |