Transposase-associated domain
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| Enzyme | Recognition Site | Cut Count | Positions (bp) |
|---|---|---|---|
| AclWI | GGATC | 2 cut(s) | 185, 198 |
| AfaI | GTAC | 2 cut(s) | 103, 398 |
| AgsI | TTSAA | 2 cut(s) | 98, 273 |
| AjnI | CCWGG | 1 cut(s) | 212 |
| AluBI | AGCT | 1 cut(s) | 242 |
| AluI | AGCT | 1 cut(s) | 242 |
| AlwI | GGATC | 2 cut(s) | 185, 198 |
| AlwNI | CAGNNNCTG | 1 cut(s) | 359 |
| AoxI | GGCC | 2 cut(s) | 266, 299 |
| ApeKI | GCWGC | 2 cut(s) | 166, 242 |
| AspS9I | GGNCC | 3 cut(s) | 266, 299, 335 |
| AsuHPI | GGTGA | 1 cut(s) | 239 |
| AvaII | GGWCC | 1 cut(s) | 335 |
| BamHI | GGATCC | 1 cut(s) | 190 |
| BbvI | GCAGC | 2 cut(s) | 178, 229 |
| BccI | CCATC | 1 cut(s) | 176 |
| BciT130I | CCWGG | 1 cut(s) | 214 |
| BclI | TGATCA | 2 cut(s) | 250, 283 |
| BfmI | CTRYAG | 2 cut(s) | 243, 276 |
| BisI | GCNGC | 2 cut(s) | 167, 243 |
| BlsI | GCNGC | 2 cut(s) | 168, 244 |
| Bme1390I | CCNGG | 1 cut(s) | 214 |
| Bme18I | GGWCC | 1 cut(s) | 335 |
| BmgT120I | GGNCC | 3 cut(s) | 266, 299, 335 |
| BmiI | GGNNCC | 1 cut(s) | 192 |
| BmrFI | CCNGG | 1 cut(s) | 214 |
| BmsI | GCATC | 2 cut(s) | 178, 373 |
| BsaJI | CCNNGG | 1 cut(s) | 212 |
| BseBI | CCWGG | 1 cut(s) | 214 |
| BseDI | CCNNGG | 1 cut(s) | 212 |
| BseGI | GGATG | 2 cut(s) | 187, 207 |
| BseMII | CTCAG | 1 cut(s) | 210 |
| BseXI | GCAGC | 2 cut(s) | 178, 229 |
| BshFI | GGCC | 2 cut(s) | 268, 301 |
| BsmI | GAATGC | 1 cut(s) | 62 |
| BsnI | GGCC | 2 cut(s) | 268, 301 |
| Bsp143I | GATC | 3 cut(s) | 190, 250, 283 |
| BspANI | GGCC | 2 cut(s) | 268, 301 |
| BspCNI | CTCAG | 1 cut(s) | 211 |
| BspLI | GGNNCC | 1 cut(s) | 192 |
| BspMAI | CTGCAG | 1 cut(s) | 247 |
| BspPI | GGATC | 2 cut(s) | 185, 198 |
| BssECI | CCNNGG | 1 cut(s) | 212 |
| BssMI | GATC | 3 cut(s) | 190, 250, 283 |
| Bst2UI | CCWGG | 1 cut(s) | 214 |
| Bst4CI | ACNGT | 2 cut(s) | 277, 339 |
| BstC8I | GCNNGC | 3 cut(s) | 60, 87, 153 |
| BstDEI | CTNAG | 2 cut(s) | 79, 219 |
| BstF5I | GGATG | 2 cut(s) | 187, 207 |
| BstKTI | GATC | 3 cut(s) | 193, 253, 286 |
| BstMBI | GATC | 3 cut(s) | 190, 250, 283 |
| BstMWI | GCNNNNNNNGC | 1 cut(s) | 229 |
| BstNI | CCWGG | 1 cut(s) | 214 |
| BstNSI | RCATGY | 2 cut(s) | 62, 89 |
| BstSCI | CCNGG | 1 cut(s) | 212 |
| BstSFI | CTRYAG | 2 cut(s) | 243, 276 |
| BstV1I | GCAGC | 2 cut(s) | 178, 229 |
| BstX2I | RGATCY | 1 cut(s) | 190 |
| BstYI | RGATCY | 1 cut(s) | 190 |
| BsuRI | GGCC | 2 cut(s) | 268, 301 |
| BtsCI | GGATG | 2 cut(s) | 187, 207 |
| BtsIMutI | CAGTG | 1 cut(s) | 33 |
| Cac8I | GCNNGC | 3 cut(s) | 60, 87, 153 |
| CaiI | CAGNNNCTG | 1 cut(s) | 359 |
| Cfr13I | GGNCC | 3 cut(s) | 266, 299, 335 |
| Csp6I | GTAC | 2 cut(s) | 102, 397 |
| CviAII | CATG | 5 cut(s) | 59, 86, 117, 187, 224 |
| CviJI | RGCY | 4 cut(s) | 138, 242, 268, 301 |
| CviKI_1 | RGCY | 4 cut(s) | 138, 242, 268, 301 |
| CviQI | GTAC | 2 cut(s) | 102, 397 |
| DdeI | CTNAG | 2 cut(s) | 79, 219 |
| DpnI | GATC | 3 cut(s) | 192, 252, 285 |
| DpnII | GATC | 3 cut(s) | 190, 250, 283 |
| Eco47I | GGWCC | 1 cut(s) | 335 |
| EcoO109I | RGGNCCY | 2 cut(s) | 266, 299 |
| EcoRII | CCWGG | 1 cut(s) | 212 |
| EcoT22I | ATGCAT | 2 cut(s) | 64, 388 |
| FaeI | CATG | 5 cut(s) | 62, 89, 120, 190, 227 |
| FatI | CATG | 5 cut(s) | 58, 85, 116, 186, 223 |
| FbaI | TGATCA | 2 cut(s) | 250, 283 |
| Fnu4HI | GCNGC | 2 cut(s) | 167, 243 |
| FokI | GGATG | 2 cut(s) | 194, 194 |
| Fsp4HI | GCNGC | 2 cut(s) | 167, 243 |
| GluI | GCNGC | 2 cut(s) | 167, 243 |
| HaeIII | GGCC | 2 cut(s) | 268, 301 |
| Hin1II | CATG | 5 cut(s) | 62, 89, 120, 190, 227 |
| HincII | GTYRAC | 1 cut(s) | 205 |
| HindII | GTYRAC | 1 cut(s) | 205 |
| HinfI | GANTC | 1 cut(s) | 356 |
| HpaI | GTTAAC | 1 cut(s) | 205 |
| HphI | GGTGA | 1 cut(s) | 239 |
| Hpy166II | GTNNAC | 1 cut(s) | 205 |
| Hpy188I | TCNGA | 1 cut(s) | 361 |
| Hpy188III | TCNNGA | 1 cut(s) | 333 |
| Hpy8I | GTNNAC | 1 cut(s) | 205 |
| HpyAV | CCTTC | 4 cut(s) | 92, 279, 312, 395 |
| HpyCH4III | ACNGT | 2 cut(s) | 277, 339 |
| HpyCH4V | TGCA | 6 cut(s) | 58, 62, 245, 367, 379, 386 |
| HpyF10VI | GCNNNNNNNGC | 1 cut(s) | 229 |
| HpyF3I | CTNAG | 2 cut(s) | 79, 219 |
| Hsp92II | CATG | 5 cut(s) | 62, 89, 120, 190, 227 |
| Ksp22I | TGATCA | 2 cut(s) | 250, 283 |
| KspAI | GTTAAC | 1 cut(s) | 205 |
| Kzo9I | GATC | 3 cut(s) | 190, 250, 283 |
| Lsp1109I | GCAGC | 2 cut(s) | 178, 229 |
| LweI | GCATC | 2 cut(s) | 178, 373 |
| MalI | GATC | 3 cut(s) | 192, 252, 285 |
| MboI | GATC | 3 cut(s) | 190, 250, 283 |
| MflI | RGATCY | 1 cut(s) | 190 |
| MluCI | AATT | 2 cut(s) | 70, 325 |
| MnlI | CCTC | 1 cut(s) | 77 |
| Mph1103I | ATGCAT | 2 cut(s) | 64, 388 |
| MseI | TTAA | 2 cut(s) | 204, 324 |
| MslI | CAYNNNNRTG | 1 cut(s) | 36 |
| MspA1I | CMGCKG | 1 cut(s) | 242 |
| MspR9I | CCNGG | 1 cut(s) | 214 |
| Mva1269I | GAATGC | 1 cut(s) | 62 |
| MvaI | CCWGG | 1 cut(s) | 214 |
| MwoI | GCNNNNNNNGC | 1 cut(s) | 229 |
| NdeII | GATC | 3 cut(s) | 190, 250, 283 |
| NlaIII | CATG | 5 cut(s) | 62, 89, 120, 190, 227 |
| NlaIV | GGNNCC | 1 cut(s) | 192 |
| NsiI | ATGCAT | 2 cut(s) | 64, 388 |
| NspI | RCATGY | 2 cut(s) | 62, 89 |
| PaeI | GCATGC | 2 cut(s) | 62, 89 |
| PctI | GAATGC | 1 cut(s) | 62 |
| PfeI | GAWTC | 1 cut(s) | 356 |
| PkrI | GCNGC | 2 cut(s) | 168, 244 |
| Psp6I | CCWGG | 1 cut(s) | 212 |
| PspGI | CCWGG | 1 cut(s) | 212 |
| PspN4I | GGNNCC | 1 cut(s) | 192 |
| PspPI | GGNCC | 3 cut(s) | 266, 299, 335 |
| PstI | CTGCAG | 1 cut(s) | 247 |
| PstNI | CAGNNNCTG | 1 cut(s) | 359 |
| PsuI | RGATCY | 1 cut(s) | 190 |
| PvuII | CAGCTG | 1 cut(s) | 242 |
| RsaI | GTAC | 2 cut(s) | 103, 398 |
| RsaNI | GTAC | 2 cut(s) | 102, 397 |
| RseI | CAYNNNNRTG | 1 cut(s) | 36 |
| SaqAI | TTAA | 2 cut(s) | 204, 324 |
| SatI | GCNGC | 2 cut(s) | 167, 243 |
| Sau3AI | GATC | 3 cut(s) | 190, 250, 283 |
| Sau96I | GGNCC | 3 cut(s) | 266, 299, 335 |
| ScrFI | CCNGG | 1 cut(s) | 214 |
| SetI | ASST | 4 cut(s) | 103, 128, 244, 406 |
| SfaNI | GCATC | 2 cut(s) | 178, 373 |
| SfcI | CTRYAG | 2 cut(s) | 243, 276 |
| SinI | GGWCC | 1 cut(s) | 335 |
| SmiMI | CAYNNNNRTG | 1 cut(s) | 36 |
| SphI | GCATGC | 2 cut(s) | 62, 89 |
| Sse9I | AATT | 2 cut(s) | 70, 325 |
| StyD4I | CCNGG | 1 cut(s) | 212 |
| TaaI | ACNGT | 2 cut(s) | 277, 339 |
| TasI | AATT | 2 cut(s) | 70, 325 |
| TfiI | GAWTC | 1 cut(s) | 356 |
| Tru1I | TTAA | 2 cut(s) | 204, 324 |
| Tru9I | TTAA | 2 cut(s) | 204, 324 |
| TscAI | CASTG | 1 cut(s) | 40 |
| TseI | GCWGC | 2 cut(s) | 166, 242 |
| TspDTI | ATGAA | 2 cut(s) | 54, 294 |
| TspRI | CASTG | 1 cut(s) | 40 |
| VpaK11BI | GGWCC | 1 cut(s) | 335 |
| XceI | RCATGY | 2 cut(s) | 62, 89 |
| Zsp2I | ATGCAT | 2 cut(s) | 64, 388 |