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| Enzyme | Recognition Site | Cut Count | Positions (bp) |
|---|---|---|---|
| AanI | TTATAA | 1 cut(s) | 1473 |
| Acc36I | ACCTGC | 2 cut(s) | 550, 691 |
| AccB1I | GGYRCC | 1 cut(s) | 1320 |
| AccB7I | CCANNNNNTGG | 2 cut(s) | 857, 1190 |
| AciI | CCGC | 1 cut(s) | 1360 |
| AclWI | GGATC | 2 cut(s) | 220, 1494 |
| AcoI | YGGCCR | 1 cut(s) | 848 |
| AcsI | RAATTY | 1 cut(s) | 362 |
| AcuI | CTGAAG | 1 cut(s) | 546 |
| AdeI | CACNNNGTG | 1 cut(s) | 126 |
| AfaI | GTAC | 4 cut(s) | 681, 701, 919, 935 |
| AfiI | CCNNNNNNNGG | 3 cut(s) | 857, 1190, 1394 |
| AflII | CTTAAG | 1 cut(s) | 922 |
| AjnI | CCWGG | 3 cut(s) | 403, 764, 1630 |
| AluBI | AGCT | 3 cut(s) | 343, 1379, 1531 |
| AluI | AGCT | 3 cut(s) | 343, 1379, 1531 |
| Alw26I | GTCTC | 1 cut(s) | 87 |
| AlwI | GGATC | 2 cut(s) | 220, 1494 |
| AoxI | GGCC | 5 cut(s) | 848, 944, 1028, 1439, 1496 |
| ApeKI | GCWGC | 2 cut(s) | 1346, 1618 |
| ApoI | RAATTY | 1 cut(s) | 362 |
| AspA2I | CCTAGG | 1 cut(s) | 716 |
| AspS9I | GGNCC | 1 cut(s) | 1028 |
| AsuC2I | CCSGG | 2 cut(s) | 1041, 1204 |
| AsuHPI | GGTGA | 1 cut(s) | 338 |
| AvrII | CCTAGG | 1 cut(s) | 716 |
| BalI | TGGCCA | 1 cut(s) | 850 |
| BanI | GGYRCC | 1 cut(s) | 1320 |
| BarI | GAAGNNNNNNTAC | 2 cut(s) | 1274, 1306 |
| BbvCI | CCTCAGC | 1 cut(s) | 1482 |
| BbvI | GCAGC | 2 cut(s) | 1333, 1605 |
| BccI | CCATC | 8 cut(s) | 785, 813, 893, 1133, 1279, 1332, 1411, 1640 |
| BceAI | ACGGC | 1 cut(s) | 1372 |
| BcgI | CGANNNNNNTGC | 2 cut(s) | 524, 558 |
| BciT130I | CCWGG | 3 cut(s) | 405, 766, 1632 |
| BclI | TGATCA | 1 cut(s) | 136 |
| BcnI | CCSGG | 2 cut(s) | 1041, 1204 |
| BcoDI | GTCTC | 1 cut(s) | 87 |
| BfaI | CTAG | 3 cut(s) | 90, 717, 1268 |
| BfmI | CTRYAG | 1 cut(s) | 810 |
| BfrI | CTTAAG | 1 cut(s) | 922 |
| BfuAI | ACCTGC | 2 cut(s) | 550, 691 |
| BisI | GCNGC | 2 cut(s) | 1347, 1619 |
| BlnI | CCTAGG | 1 cut(s) | 716 |
| BlsI | GCNGC | 2 cut(s) | 1348, 1620 |
| Bme1390I | CCNGG | 5 cut(s) | 405, 766, 1041, 1204, 1632 |
| BmgT120I | GGNCC | 1 cut(s) | 1028 |
| BmiI | GGNNCC | 2 cut(s) | 1029, 1322 |
| BmrFI | CCNGG | 5 cut(s) | 405, 766, 1041, 1204, 1632 |
| BmsI | GCATC | 5 cut(s) | 6, 373, 830, 996, 1111 |
| BpmI | CTGGAG | 1 cut(s) | 1416 |
| Bpu10I | CCTNAGC | 1 cut(s) | 1482 |
| BpuMI | CCSGG | 2 cut(s) | 1041, 1204 |
| BsaI | GGTCTC | 1 cut(s) | 87 |
| BsaJI | CCNNGG | 3 cut(s) | 403, 716, 977 |
| Bsc4I | CCNNNNNNNGG | 3 cut(s) | 857, 1190, 1394 |
| Bse1I | ACTGG | 2 cut(s) | 348, 1399 |
| BseBI | CCWGG | 3 cut(s) | 405, 766, 1632 |
| BseDI | CCNNGG | 3 cut(s) | 403, 716, 977 |
| BseGI | GGATG | 7 cut(s) | 21, 796, 805, 844, 1324, 1422, 1651 |
| BseLI | CCNNNNNNNGG | 3 cut(s) | 857, 1190, 1394 |
| BseMII | CTCAG | 1 cut(s) | 1473 |
| BseNI | ACTGG | 2 cut(s) | 348, 1399 |
| BseRI | GAGGAG | 3 cut(s) | 353, 1436, 1452 |
| BseXI | GCAGC | 2 cut(s) | 1333, 1605 |
| BsgI | GTGCAG | 1 cut(s) | 287 |
| BshFI | GGCC | 5 cut(s) | 850, 946, 1030, 1441, 1498 |
| BshNI | GGYRCC | 1 cut(s) | 1320 |
| BsiSI | CCGG | 2 cut(s) | 1040, 1203 |
| BslFI | GGGAC | 2 cut(s) | 1218, 1627 |
| BslI | CCNNNNNNNGG | 3 cut(s) | 857, 1190, 1394 |
| BsmAI | GTCTC | 1 cut(s) | 87 |
| BsmFI | GGGAC | 2 cut(s) | 1218, 1627 |
| BsnI | GGCC | 5 cut(s) | 850, 946, 1030, 1441, 1498 |
| Bso31I | GGTCTC | 1 cut(s) | 87 |
| Bsp143I | GATC | 3 cut(s) | 136, 212, 1486 |
| Bsp19I | CCATGG | 1 cut(s) | 977 |
| BspACI | CCGC | 1 cut(s) | 1360 |
| BspANI | GGCC | 5 cut(s) | 850, 946, 1030, 1441, 1498 |
| BspCNI | CTCAG | 1 cut(s) | 1474 |
| BspLI | GGNNCC | 2 cut(s) | 1029, 1322 |
| BspMAI | CTGCAG | 1 cut(s) | 814 |
| BspMI | ACCTGC | 2 cut(s) | 550, 691 |
| BspPI | GGATC | 2 cut(s) | 220, 1494 |
| BspT107I | GGYRCC | 1 cut(s) | 1320 |
| BspTI | CTTAAG | 1 cut(s) | 922 |
| BspTNI | GGTCTC | 1 cut(s) | 87 |
| BsrI | ACTGG | 2 cut(s) | 348, 1399 |
| BssECI | CCNNGG | 3 cut(s) | 403, 716, 977 |
| BssMI | GATC | 3 cut(s) | 136, 212, 1486 |
| BssT1I | CCWWGG | 2 cut(s) | 716, 977 |
| Bst2UI | CCWGG | 3 cut(s) | 405, 766, 1632 |
| Bst4CI | ACNGT | 5 cut(s) | 104, 623, 642, 938, 1071 |
| Bst6I | CTCTTC | 1 cut(s) | 986 |
| BstAFI | CTTAAG | 1 cut(s) | 922 |
| BstC8I | GCNNGC | 3 cut(s) | 21, 610, 771 |
| BstDEI | CTNAG | 3 cut(s) | 513, 1482, 1641 |
| BstDSI | CCRYGG | 1 cut(s) | 977 |
| BstEII | GGTNACC | 2 cut(s) | 958, 1193 |
| BstF5I | GGATG | 7 cut(s) | 21, 796, 805, 844, 1324, 1422, 1651 |
| BstKTI | GATC | 3 cut(s) | 139, 215, 1489 |
| BstMAI | GTCTC | 1 cut(s) | 87 |
| BstMBI | GATC | 3 cut(s) | 136, 212, 1486 |
| BstMWI | GCNNNNNNNGC | 3 cut(s) | 442, 801, 818 |
| BstNI | CCWGG | 3 cut(s) | 405, 766, 1632 |
| BstNSI | RCATGY | 5 cut(s) | 23, 608, 773, 1233, 1373 |
| BstPI | GGTNACC | 2 cut(s) | 958, 1193 |
| BstSCI | CCNGG | 5 cut(s) | 403, 764, 1039, 1202, 1630 |
| BstSFI | CTRYAG | 1 cut(s) | 810 |
| BstV1I | GCAGC | 2 cut(s) | 1333, 1605 |
| BsuRI | GGCC | 5 cut(s) | 850, 946, 1030, 1441, 1498 |
| BtgI | CCRYGG | 1 cut(s) | 977 |
| BtsCI | GGATG | 7 cut(s) | 21, 796, 805, 844, 1324, 1422, 1651 |
| BtsI | GCAGTG | 1 cut(s) | 1561 |
| BtsIMutI | CAGTG | 4 cut(s) | 355, 647, 774, 1561 |
| BveI | ACCTGC | 2 cut(s) | 550, 691 |
| Cac8I | GCNNGC | 3 cut(s) | 21, 610, 771 |
| Cfr13I | GGNCC | 1 cut(s) | 1028 |
| CseI | GACGC | 1 cut(s) | 1624 |
| Csp6I | GTAC | 4 cut(s) | 680, 700, 918, 934 |
| CviQI | GTAC | 4 cut(s) | 680, 700, 918, 934 |
| DdeI | CTNAG | 3 cut(s) | 513, 1482, 1641 |
| DpnI | GATC | 3 cut(s) | 138, 214, 1488 |
| DpnII | GATC | 3 cut(s) | 136, 212, 1486 |
| DraIII | CACNNNGTG | 1 cut(s) | 126 |
| EaeI | YGGCCR | 1 cut(s) | 848 |
| Eam1104I | CTCTTC | 1 cut(s) | 986 |
| EarI | CTCTTC | 1 cut(s) | 986 |
| Eco130I | CCWWGG | 2 cut(s) | 716, 977 |
| Eco147I | AGGCCT | 1 cut(s) | 1498 |
| Eco31I | GGTCTC | 1 cut(s) | 87 |
| Eco32I | GATATC | 1 cut(s) | 1023 |
| Eco57I | CTGAAG | 1 cut(s) | 546 |
| Eco91I | GGTNACC | 2 cut(s) | 958, 1193 |
| EcoO109I | RGGNCCY | 1 cut(s) | 1028 |
| EcoO65I | GGTNACC | 2 cut(s) | 958, 1193 |
| EcoRII | CCWGG | 3 cut(s) | 403, 764, 1630 |
| EcoRV | GATATC | 1 cut(s) | 1023 |
| EcoT14I | CCWWGG | 2 cut(s) | 716, 977 |
| EcoT22I | ATGCAT | 2 cut(s) | 21, 1231 |
| ErhI | CCWWGG | 2 cut(s) | 716, 977 |
| FalI | AAGNNNNNCTT | 4 cut(s) | 779, 811, 1333, 1365 |
| FaqI | GGGAC | 2 cut(s) | 1218, 1627 |
| FbaI | TGATCA | 1 cut(s) | 136 |
| Fnu4HI | GCNGC | 2 cut(s) | 1347, 1619 |
| FokI | GGATG | 7 cut(s) | 28, 792, 803, 851, 1311, 1429, 1658 |
| Fsp4HI | GCNGC | 2 cut(s) | 1347, 1619 |
| FspBI | CTAG | 3 cut(s) | 90, 717, 1268 |
| GluI | GCNGC | 2 cut(s) | 1347, 1619 |
| GsuI | CTGGAG | 1 cut(s) | 1416 |
| HaeIII | GGCC | 5 cut(s) | 850, 946, 1030, 1441, 1498 |
| HapII | CCGG | 2 cut(s) | 1040, 1203 |
| HgaI | GACGC | 1 cut(s) | 1624 |
| HincII | GTYRAC | 2 cut(s) | 379, 1392 |
| HindII | GTYRAC | 2 cut(s) | 379, 1392 |
| HinfI | GANTC | 6 cut(s) | 206, 254, 260, 479, 815, 1104 |
| HpaII | CCGG | 2 cut(s) | 1040, 1203 |
| HphI | GGTGA | 1 cut(s) | 338 |
| Hpy166II | GTNNAC | 5 cut(s) | 379, 1060, 1117, 1273, 1392 |
| Hpy188I | TCNGA | 3 cut(s) | 259, 493, 898 |
| Hpy188III | TCNNGA | 5 cut(s) | 210, 524, 1129, 1165, 1244 |
| Hpy8I | GTNNAC | 5 cut(s) | 379, 1060, 1117, 1273, 1392 |
| HpyAV | CCTTC | 5 cut(s) | 317, 521, 1094, 1311, 1407 |
| HpyCH4III | ACNGT | 5 cut(s) | 104, 623, 642, 938, 1071 |
| HpyF10VI | GCNNNNNNNGC | 3 cut(s) | 442, 801, 818 |
| HpyF3I | CTNAG | 3 cut(s) | 513, 1482, 1641 |
| Ksp22I | TGATCA | 1 cut(s) | 136 |
| Kzo9I | GATC | 3 cut(s) | 136, 212, 1486 |
| LmnI | GCTCC | 3 cut(s) | 340, 1206, 1384 |
| Lsp1109I | GCAGC | 2 cut(s) | 1333, 1605 |
| LweI | GCATC | 5 cut(s) | 6, 373, 830, 996, 1111 |
| MaeI | CTAG | 3 cut(s) | 90, 717, 1268 |
| MaeIII | GTNAC | 3 cut(s) | 272, 958, 1193 |
| MalI | GATC | 3 cut(s) | 138, 214, 1488 |
| MboI | GATC | 3 cut(s) | 136, 212, 1486 |
| MboII | GAAGA | 8 cut(s) | 344, 512, 1003, 1294, 1412, 1462, 1519, 1522 |
| MfeI | CAATTG | 2 cut(s) | 249, 741 |
| MlsI | TGGCCA | 1 cut(s) | 850 |
| MluCI | AATT | 8 cut(s) | 239, 249, 299, 362, 741, 798, 951, 1676 |
| MluNI | TGGCCA | 1 cut(s) | 850 |
| MlyI | GAGTC | 3 cut(s) | 215, 254, 1113 |
| MmeI | TCCRAC | 2 cut(s) | 300, 1484 |
| Mox20I | TGGCCA | 1 cut(s) | 850 |
| Mph1103I | ATGCAT | 2 cut(s) | 21, 1231 |
| MscI | TGGCCA | 1 cut(s) | 850 |
| MseI | TTAA | 5 cut(s) | 366, 761, 797, 923, 1340 |
| MslI | CAYNNNNRTG | 1 cut(s) | 425 |
| Msp20I | TGGCCA | 1 cut(s) | 850 |
| MspCI | CTTAAG | 1 cut(s) | 922 |
| MspI | CCGG | 2 cut(s) | 1040, 1203 |
| MspR9I | CCNGG | 5 cut(s) | 405, 766, 1041, 1204, 1632 |
| MunI | CAATTG | 2 cut(s) | 249, 741 |
| MvaI | CCWGG | 3 cut(s) | 405, 766, 1632 |
| MwoI | GCNNNNNNNGC | 3 cut(s) | 442, 801, 818 |
| NciI | CCSGG | 2 cut(s) | 1041, 1204 |
| NcoI | CCATGG | 1 cut(s) | 977 |
| NdeII | GATC | 3 cut(s) | 136, 212, 1486 |
| NlaIV | GGNNCC | 2 cut(s) | 1029, 1322 |
| NsiI | ATGCAT | 2 cut(s) | 21, 1231 |
| NspI | RCATGY | 5 cut(s) | 23, 608, 773, 1233, 1373 |
| PaeI | GCATGC | 2 cut(s) | 23, 773 |
| PceI | AGGCCT | 1 cut(s) | 1498 |
| PcsI | WCGNNNNNNNCGW | 1 cut(s) | 877 |
| PfeI | GAWTC | 3 cut(s) | 254, 479, 815 |
| PflMI | CCANNNNNTGG | 2 cut(s) | 857, 1190 |
| PfoI | TCCNGGA | 2 cut(s) | 1202, 1630 |
| PkrI | GCNGC | 2 cut(s) | 1348, 1620 |
| PleI | GAGTC | 3 cut(s) | 214, 254, 1112 |
| PpsI | GAGTC | 3 cut(s) | 214, 254, 1112 |
| PsiI | TTATAA | 1 cut(s) | 1473 |
| Psp6I | CCWGG | 3 cut(s) | 403, 764, 1630 |
| PspEI | GGTNACC | 2 cut(s) | 958, 1193 |
| PspGI | CCWGG | 3 cut(s) | 403, 764, 1630 |
| PspN4I | GGNNCC | 2 cut(s) | 1029, 1322 |
| PspPI | GGNCC | 1 cut(s) | 1028 |
| PstI | CTGCAG | 1 cut(s) | 814 |
| RsaI | GTAC | 4 cut(s) | 681, 701, 919, 935 |
| RsaNI | GTAC | 4 cut(s) | 680, 700, 918, 934 |
| RseI | CAYNNNNRTG | 1 cut(s) | 425 |
| SaqAI | TTAA | 5 cut(s) | 366, 761, 797, 923, 1340 |
| SatI | GCNGC | 2 cut(s) | 1347, 1619 |
| Sau3AI | GATC | 3 cut(s) | 136, 212, 1486 |
| Sau96I | GGNCC | 1 cut(s) | 1028 |
| SchI | GAGTC | 3 cut(s) | 215, 254, 1113 |
| ScrFI | CCNGG | 5 cut(s) | 405, 766, 1041, 1204, 1632 |
| SfaNI | GCATC | 5 cut(s) | 6, 373, 830, 996, 1111 |
| SfcI | CTRYAG | 1 cut(s) | 810 |
| SmiMI | CAYNNNNRTG | 1 cut(s) | 425 |
| SmlI | CTYRAG | 1 cut(s) | 922 |
| SmoI | CTYRAG | 1 cut(s) | 922 |
| SphI | GCATGC | 2 cut(s) | 23, 773 |
| Sse9I | AATT | 8 cut(s) | 239, 249, 299, 362, 741, 798, 951, 1676 |
| SseBI | AGGCCT | 1 cut(s) | 1498 |
| SsiI | CCGC | 1 cut(s) | 1360 |
| SspI | AATATT | 1 cut(s) | 1538 |
| SspMI | CTAG | 3 cut(s) | 90, 717, 1268 |
| StuI | AGGCCT | 1 cut(s) | 1498 |
| StyD4I | CCNGG | 5 cut(s) | 403, 764, 1039, 1202, 1630 |
| StyI | CCWWGG | 2 cut(s) | 716, 977 |
| TaaI | ACNGT | 5 cut(s) | 104, 623, 642, 938, 1071 |
| TaqI | TCGA | 1 cut(s) | 1517 |
| TasI | AATT | 8 cut(s) | 239, 249, 299, 362, 741, 798, 951, 1676 |
| TatI | WGTACW | 1 cut(s) | 933 |
| TfiI | GAWTC | 3 cut(s) | 254, 479, 815 |
| Tru1I | TTAA | 5 cut(s) | 366, 761, 797, 923, 1340 |
| Tru9I | TTAA | 5 cut(s) | 366, 761, 797, 923, 1340 |
| TscAI | CASTG | 4 cut(s) | 355, 647, 781, 1568 |
| TseI | GCWGC | 2 cut(s) | 1346, 1618 |
| TspGWI | ACGGA | 3 cut(s) | 236, 1290, 1371 |
| TspRI | CASTG | 4 cut(s) | 355, 647, 781, 1568 |
| Van91I | CCANNNNNTGG | 2 cut(s) | 857, 1190 |
| Vha464I | CTTAAG | 1 cut(s) | 922 |
| XapI | RAATTY | 1 cut(s) | 362 |
| XceI | RCATGY | 5 cut(s) | 23, 608, 773, 1233, 1373 |
| XmaJI | CCTAGG | 1 cut(s) | 716 |
| XspI | CTAG | 3 cut(s) | 90, 717, 1268 |
| Zsp2I | ATGCAT | 2 cut(s) | 21, 1231 |