Transposase-associated domain
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| Enzyme | Recognition Site | Cut Count | Positions (bp) |
|---|---|---|---|
| AccII | CGCG | 1 cut(s) | 605 |
| AciI | CCGC | 1 cut(s) | 745 |
| AclI | AACGTT | 1 cut(s) | 46 |
| AclWI | GGATC | 3 cut(s) | 12, 59, 88 |
| AcsI | RAATTY | 3 cut(s) | 136, 461, 698 |
| AcuI | CTGAAG | 3 cut(s) | 69, 237, 528 |
| AfaI | GTAC | 2 cut(s) | 581, 677 |
| AfiI | CCNNNNNNNGG | 2 cut(s) | 218, 308 |
| AflIII | ACRYGT | 1 cut(s) | 678 |
| AgsI | TTSAA | 1 cut(s) | 668 |
| AhlI | ACTAGT | 1 cut(s) | 572 |
| AjnI | CCWGG | 3 cut(s) | 76, 205, 421 |
| AluBI | AGCT | 2 cut(s) | 626, 755 |
| AluI | AGCT | 2 cut(s) | 626, 755 |
| Alw21I | GWGCWC | 1 cut(s) | 39 |
| Alw26I | GTCTC | 2 cut(s) | 687, 718 |
| AlwI | GGATC | 3 cut(s) | 12, 59, 88 |
| Ama87I | CYCGRG | 2 cut(s) | 301, 476 |
| AoxI | GGCC | 2 cut(s) | 238, 656 |
| ApeKI | GCWGC | 1 cut(s) | 626 |
| ApoI | RAATTY | 3 cut(s) | 136, 461, 698 |
| Asp700I | GAANNNNTTC | 1 cut(s) | 432 |
| AspS9I | GGNCC | 6 cut(s) | 30, 116, 209, 221, 239, 656 |
| AsuC2I | CCSGG | 2 cut(s) | 302, 303 |
| AsuHPI | GGTGA | 1 cut(s) | 53 |
| AvaI | CYCGRG | 2 cut(s) | 301, 476 |
| AvaII | GGWCC | 4 cut(s) | 30, 116, 209, 221 |
| BamHI | GGATCC | 1 cut(s) | 4 |
| BauI | CACGAG | 1 cut(s) | 729 |
| BbsI | GAAGAC | 1 cut(s) | 626 |
| Bbv12I | GWGCWC | 1 cut(s) | 39 |
| BbvI | GCAGC | 1 cut(s) | 613 |
| BccI | CCATC | 4 cut(s) | 118, 127, 232, 756 |
| BciT130I | CCWGG | 3 cut(s) | 78, 207, 423 |
| BcnI | CCSGG | 2 cut(s) | 302, 303 |
| BcoDI | GTCTC | 2 cut(s) | 687, 718 |
| BcuI | ACTAGT | 1 cut(s) | 572 |
| BfaI | CTAG | 2 cut(s) | 243, 573 |
| BglII | AGATCT | 1 cut(s) | 472 |
| BisI | GCNGC | 1 cut(s) | 627 |
| BlsI | GCNGC | 1 cut(s) | 628 |
| Bme1390I | CCNGG | 5 cut(s) | 78, 207, 302, 303, 423 |
| Bme18I | GGWCC | 4 cut(s) | 30, 116, 209, 221 |
| BmeT110I | CYCGRG | 2 cut(s) | 301, 476 |
| BmgT120I | GGNCC | 6 cut(s) | 30, 116, 209, 221, 239, 656 |
| BmiI | GGNNCC | 1 cut(s) | 6 |
| BmrFI | CCNGG | 5 cut(s) | 78, 207, 302, 303, 423 |
| BmsI | GCATC | 1 cut(s) | 490 |
| BpiI | GAAGAC | 1 cut(s) | 626 |
| BpuMI | CCSGG | 2 cut(s) | 302, 303 |
| Bsa29I | ATCGAT | 1 cut(s) | 498 |
| BsaBI | GATNNNNATC | 1 cut(s) | 105 |
| BsaI | GGTCTC | 1 cut(s) | 718 |
| BsaJI | CCNNGG | 4 cut(s) | 26, 235, 301, 422 |
| Bsc4I | CCNNNNNNNGG | 2 cut(s) | 218, 308 |
| Bse1I | ACTGG | 1 cut(s) | 53 |
| Bse3DI | GCAATG | 1 cut(s) | 356 |
| Bse8I | GATNNNNATC | 1 cut(s) | 105 |
| BseBI | CCWGG | 3 cut(s) | 78, 207, 423 |
| BseCI | ATCGAT | 1 cut(s) | 498 |
| BseDI | CCNNGG | 4 cut(s) | 26, 235, 301, 422 |
| BseGI | GGATG | 3 cut(s) | 224, 608, 748 |
| BseJI | GATNNNNATC | 1 cut(s) | 105 |
| BseLI | CCNNNNNNNGG | 2 cut(s) | 218, 308 |
| BseMI | GCAATG | 1 cut(s) | 356 |
| BseMII | CTCAG | 2 cut(s) | 143, 708 |
| BseNI | ACTGG | 1 cut(s) | 53 |
| BseXI | GCAGC | 1 cut(s) | 613 |
| BsgI | GTGCAG | 1 cut(s) | 327 |
| Bsh1236I | CGCG | 1 cut(s) | 605 |
| BshFI | GGCC | 2 cut(s) | 240, 658 |
| BshVI | ATCGAT | 1 cut(s) | 498 |
| BsiHKAI | GWGCWC | 1 cut(s) | 39 |
| BsiHKCI | CYCGRG | 2 cut(s) | 301, 476 |
| BsiSI | CCGG | 1 cut(s) | 302 |
| BslI | CCNNNNNNNGG | 2 cut(s) | 218, 308 |
| BsmAI | GTCTC | 2 cut(s) | 687, 718 |
| BsmI | GAATGC | 1 cut(s) | 712 |
| BsnI | GGCC | 2 cut(s) | 240, 658 |
| Bso31I | GGTCTC | 1 cut(s) | 718 |
| BsoBI | CYCGRG | 2 cut(s) | 301, 476 |
| Bsp1286I | GDGCHC | 1 cut(s) | 39 |
| Bsp1407I | TGTACA | 1 cut(s) | 675 |
| Bsp143I | GATC | 6 cut(s) | 4, 64, 80, 472, 495, 535 |
| Bsp19I | CCATGG | 1 cut(s) | 235 |
| BspACI | CCGC | 1 cut(s) | 745 |
| BspANI | GGCC | 2 cut(s) | 240, 658 |
| BspCNI | CTCAG | 2 cut(s) | 142, 707 |
| BspDI | ATCGAT | 1 cut(s) | 498 |
| BspFNI | CGCG | 1 cut(s) | 605 |
| BspLI | GGNNCC | 1 cut(s) | 6 |
| BspPI | GGATC | 3 cut(s) | 12, 59, 88 |
| BspTNI | GGTCTC | 1 cut(s) | 718 |
| BsrDI | GCAATG | 1 cut(s) | 356 |
| BsrGI | TGTACA | 1 cut(s) | 675 |
| BsrI | ACTGG | 1 cut(s) | 53 |
| BssECI | CCNNGG | 4 cut(s) | 26, 235, 301, 422 |
| BssMI | GATC | 6 cut(s) | 4, 64, 80, 472, 495, 535 |
| BssSI | CACGAG | 1 cut(s) | 729 |
| BssT1I | CCWWGG | 2 cut(s) | 26, 235 |
| Bst2BI | CACGAG | 1 cut(s) | 729 |
| Bst2UI | CCWGG | 3 cut(s) | 78, 207, 423 |
| Bst4CI | ACNGT | 2 cut(s) | 41, 553 |
| Bst6I | CTCTTC | 1 cut(s) | 438 |
| BstAUI | TGTACA | 1 cut(s) | 675 |
| BstDEI | CTNAG | 3 cut(s) | 129, 630, 694 |
| BstDSI | CCRYGG | 1 cut(s) | 235 |
| BstENI | CCTNNNNNAGG | 1 cut(s) | 216 |
| BstF5I | GGATG | 3 cut(s) | 224, 608, 748 |
| BstFNI | CGCG | 1 cut(s) | 605 |
| BstKTI | GATC | 6 cut(s) | 7, 67, 83, 475, 498, 538 |
| BstMAI | GTCTC | 2 cut(s) | 687, 718 |
| BstMBI | GATC | 6 cut(s) | 4, 64, 80, 472, 495, 535 |
| BstNI | CCWGG | 3 cut(s) | 78, 207, 423 |
| BstNSI | RCATGY | 2 cut(s) | 507, 682 |
| BstSCI | CCNGG | 5 cut(s) | 76, 205, 300, 301, 421 |
| BstUI | CGCG | 1 cut(s) | 605 |
| BstV1I | GCAGC | 1 cut(s) | 613 |
| BstV2I | GAAGAC | 1 cut(s) | 626 |
| BstX2I | RGATCY | 3 cut(s) | 4, 80, 472 |
| BstYI | RGATCY | 3 cut(s) | 4, 80, 472 |
| Bsu15I | ATCGAT | 1 cut(s) | 498 |
| BsuRI | GGCC | 2 cut(s) | 240, 658 |
| BsuTUI | ATCGAT | 1 cut(s) | 498 |
| BtgI | CCRYGG | 1 cut(s) | 235 |
| BtsCI | GGATG | 3 cut(s) | 224, 608, 748 |
| Cfr13I | GGNCC | 6 cut(s) | 30, 116, 209, 221, 239, 656 |
| Cfr9I | CCCGGG | 1 cut(s) | 301 |
| ClaI | ATCGAT | 1 cut(s) | 498 |
| CseI | GACGC | 2 cut(s) | 290, 611 |
| Csp6I | GTAC | 2 cut(s) | 580, 676 |
| CviAII | CATG | 7 cut(s) | 161, 229, 236, 504, 539, 560, 679 |
| CviJI | RGCY | 9 cut(s) | 133, 240, 246, 410, 481, 626, 658, 673, 755 |
| CviKI_1 | RGCY | 9 cut(s) | 133, 240, 246, 410, 481, 626, 658, 673, 755 |
| CviQI | GTAC | 2 cut(s) | 580, 676 |
| DdeI | CTNAG | 3 cut(s) | 129, 630, 694 |
| DpnI | GATC | 6 cut(s) | 6, 66, 82, 474, 497, 537 |
| DpnII | GATC | 6 cut(s) | 4, 64, 80, 472, 495, 535 |
| Eam1104I | CTCTTC | 1 cut(s) | 438 |
| EarI | CTCTTC | 1 cut(s) | 438 |
| EciI | GGCGGA | 1 cut(s) | 734 |
| Eco130I | CCWWGG | 2 cut(s) | 26, 235 |
| Eco31I | GGTCTC | 1 cut(s) | 718 |
| Eco47I | GGWCC | 4 cut(s) | 30, 116, 209, 221 |
| Eco57I | CTGAAG | 3 cut(s) | 69, 237, 528 |
| Eco88I | CYCGRG | 2 cut(s) | 301, 476 |
| EcoNI | CCTNNNNNAGG | 1 cut(s) | 216 |
| EcoO109I | RGGNCCY | 1 cut(s) | 209 |
| EcoRII | CCWGG | 3 cut(s) | 76, 205, 421 |
| EcoT14I | CCWWGG | 2 cut(s) | 26, 235 |
| EcoT22I | ATGCAT | 1 cut(s) | 505 |
| ErhI | CCWWGG | 2 cut(s) | 26, 235 |
| FaeI | CATG | 7 cut(s) | 164, 232, 239, 507, 542, 563, 682 |
| FatI | CATG | 7 cut(s) | 160, 228, 235, 503, 538, 559, 678 |
| Fnu4HI | GCNGC | 1 cut(s) | 627 |
| FokI | GGATG | 3 cut(s) | 211, 595, 735 |
| Fsp4HI | GCNGC | 1 cut(s) | 627 |
| FspBI | CTAG | 2 cut(s) | 243, 573 |
| GluI | GCNGC | 1 cut(s) | 627 |
| HaeIII | GGCC | 2 cut(s) | 240, 658 |
| HapII | CCGG | 1 cut(s) | 302 |
| HgaI | GACGC | 2 cut(s) | 290, 611 |
| Hin1II | CATG | 7 cut(s) | 164, 232, 239, 507, 542, 563, 682 |
| HincII | GTYRAC | 1 cut(s) | 19 |
| HindII | GTYRAC | 1 cut(s) | 19 |
| HinfI | GANTC | 3 cut(s) | 261, 634, 758 |
| HpaI | GTTAAC | 1 cut(s) | 19 |
| HpaII | CCGG | 1 cut(s) | 302 |
| HphI | GGTGA | 1 cut(s) | 53 |
| Hpy166II | GTNNAC | 4 cut(s) | 19, 44, 50, 384 |
| Hpy188I | TCNGA | 5 cut(s) | 9, 88, 547, 697, 718 |
| Hpy188III | TCNNGA | 2 cut(s) | 114, 331 |
| Hpy8I | GTNNAC | 4 cut(s) | 19, 44, 50, 384 |
| HpyAV | CCTTC | 1 cut(s) | 212 |
| HpyCH4III | ACNGT | 2 cut(s) | 41, 553 |
| HpyCH4IV | ACGT | 2 cut(s) | 46, 443 |
| HpyCH4V | TGCA | 5 cut(s) | 59, 148, 308, 361, 503 |
| HpyF3I | CTNAG | 3 cut(s) | 129, 630, 694 |
| HpySE526I | ACGT | 2 cut(s) | 46, 443 |
| Hsp92II | CATG | 7 cut(s) | 164, 232, 239, 507, 542, 563, 682 |
| KspAI | GTTAAC | 1 cut(s) | 19 |
| Kzo9I | GATC | 6 cut(s) | 4, 64, 80, 472, 495, 535 |
| Lsp1109I | GCAGC | 1 cut(s) | 613 |
| LweI | GCATC | 1 cut(s) | 490 |
| MaeI | CTAG | 2 cut(s) | 243, 573 |
| MaeII | ACGT | 2 cut(s) | 46, 443 |
| MaeIII | GTNAC | 1 cut(s) | 641 |
| MalI | GATC | 6 cut(s) | 6, 66, 82, 474, 497, 537 |
| MboI | GATC | 6 cut(s) | 4, 64, 80, 472, 495, 535 |
| MboII | GAAGA | 8 cut(s) | 75, 194, 197, 200, 325, 328, 425, 631 |
| MflI | RGATCY | 3 cut(s) | 4, 80, 472 |
| MhlI | GDGCHC | 1 cut(s) | 39 |
| MluCI | AATT | 6 cut(s) | 70, 136, 193, 293, 461, 698 |
| MmeI | TCCRAC | 1 cut(s) | 347 |
| MnlI | CCTC | 4 cut(s) | 102, 429, 703, 730 |
| Mph1103I | ATGCAT | 1 cut(s) | 505 |
| MroXI | GAANNNNTTC | 1 cut(s) | 432 |
| MseI | TTAA | 6 cut(s) | 18, 105, 350, 404, 468, 778 |
| MslI | CAYNNNNRTG | 1 cut(s) | 564 |
| MspA1I | CMGCKG | 2 cut(s) | 626, 755 |
| MspI | CCGG | 1 cut(s) | 302 |
| MspR9I | CCNGG | 5 cut(s) | 78, 207, 302, 303, 423 |
| Mva1269I | GAATGC | 1 cut(s) | 712 |
| MvaI | CCWGG | 3 cut(s) | 78, 207, 423 |
| MvnI | CGCG | 1 cut(s) | 605 |
| NciI | CCSGG | 2 cut(s) | 302, 303 |
| NcoI | CCATGG | 1 cut(s) | 235 |
| NdeII | GATC | 6 cut(s) | 4, 64, 80, 472, 495, 535 |
| NlaIII | CATG | 7 cut(s) | 164, 232, 239, 507, 542, 563, 682 |
| NlaIV | GGNNCC | 1 cut(s) | 6 |
| NsiI | ATGCAT | 1 cut(s) | 505 |
| NspI | RCATGY | 2 cut(s) | 507, 682 |
| PciI | ACATGT | 1 cut(s) | 678 |
| PctI | GAATGC | 1 cut(s) | 712 |
| PdmI | GAANNNNTTC | 1 cut(s) | 432 |
| PfeI | GAWTC | 3 cut(s) | 261, 634, 758 |
| PkrI | GCNGC | 1 cut(s) | 628 |
| PpuMI | RGGWCCY | 1 cut(s) | 209 |
| PscI | ACATGT | 1 cut(s) | 678 |
| Psp1406I | AACGTT | 1 cut(s) | 46 |
| Psp5II | RGGWCCY | 1 cut(s) | 209 |
| Psp6I | CCWGG | 3 cut(s) | 76, 205, 421 |
| PspGI | CCWGG | 3 cut(s) | 76, 205, 421 |
| PspN4I | GGNNCC | 1 cut(s) | 6 |
| PspPI | GGNCC | 6 cut(s) | 30, 116, 209, 221, 239, 656 |
| PspPPI | RGGWCCY | 1 cut(s) | 209 |
| PsuI | RGATCY | 3 cut(s) | 4, 80, 472 |
| PvuII | CAGCTG | 2 cut(s) | 626, 755 |
| RsaI | GTAC | 2 cut(s) | 581, 677 |
| RsaNI | GTAC | 2 cut(s) | 580, 676 |
| RseI | CAYNNNNRTG | 1 cut(s) | 564 |
| SaqAI | TTAA | 6 cut(s) | 18, 105, 350, 404, 468, 778 |
| SatI | GCNGC | 1 cut(s) | 627 |
| Sau3AI | GATC | 6 cut(s) | 4, 64, 80, 472, 495, 535 |
| Sau96I | GGNCC | 6 cut(s) | 30, 116, 209, 221, 239, 656 |
| ScrFI | CCNGG | 5 cut(s) | 78, 207, 302, 303, 423 |
| SduI | GDGCHC | 1 cut(s) | 39 |
| SetI | ASST | 9 cut(s) | 49, 94, 214, 223, 446, 628, 695, 741, 757 |
| SfaNI | GCATC | 1 cut(s) | 490 |
| SinI | GGWCC | 4 cut(s) | 30, 116, 209, 221 |
| SmaI | CCCGGG | 1 cut(s) | 303 |
| SmiMI | CAYNNNNRTG | 1 cut(s) | 564 |
| SpeI | ACTAGT | 1 cut(s) | 572 |
| Sse9I | AATT | 6 cut(s) | 70, 136, 193, 293, 461, 698 |
| SsiI | CCGC | 1 cut(s) | 745 |
| SspMI | CTAG | 2 cut(s) | 243, 573 |
| StyD4I | CCNGG | 5 cut(s) | 76, 205, 300, 301, 421 |
| StyI | CCWWGG | 2 cut(s) | 26, 235 |
| TaaI | ACNGT | 2 cut(s) | 41, 553 |
| TaiI | ACGT | 2 cut(s) | 49, 446 |
| TaqI | TCGA | 2 cut(s) | 498, 529 |
| TaqII | GACCGA | 1 cut(s) | 47 |
| TasI | AATT | 6 cut(s) | 70, 136, 193, 293, 461, 698 |
| TatI | WGTACW | 1 cut(s) | 675 |
| TfiI | GAWTC | 3 cut(s) | 261, 634, 758 |
| Tru1I | TTAA | 6 cut(s) | 18, 105, 350, 404, 468, 778 |
| Tru9I | TTAA | 6 cut(s) | 18, 105, 350, 404, 468, 778 |
| TseI | GCWGC | 1 cut(s) | 626 |
| TspDTI | ATGAA | 1 cut(s) | 195 |
| TspMI | CCCGGG | 1 cut(s) | 301 |
| VpaK11BI | GGWCC | 4 cut(s) | 30, 116, 209, 221 |
| XagI | CCTNNNNNAGG | 1 cut(s) | 216 |
| XapI | RAATTY | 3 cut(s) | 136, 461, 698 |
| XceI | RCATGY | 2 cut(s) | 507, 682 |
| XmaI | CCCGGG | 1 cut(s) | 301 |
| XmnI | GAANNNNTTC | 1 cut(s) | 432 |
| XspI | CTAG | 2 cut(s) | 243, 573 |
| Zsp2I | ATGCAT | 1 cut(s) | 505 |