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| Enzyme | Recognition Site | Cut Count | Positions (bp) |
|---|---|---|---|
| AccI | GTMKAC | 1 cut(s) | 355 |
| AciI | CCGC | 1 cut(s) | 497 |
| AcsI | RAATTY | 1 cut(s) | 49 |
| AfaI | GTAC | 1 cut(s) | 40 |
| AflII | CTTAAG | 1 cut(s) | 293 |
| AgsI | TTSAA | 5 cut(s) | 49, 55, 180, 246, 280 |
| AjnI | CCWGG | 1 cut(s) | 93 |
| AluBI | AGCT | 2 cut(s) | 101, 422 |
| AluI | AGCT | 2 cut(s) | 101, 422 |
| Alw26I | GTCTC | 4 cut(s) | 80, 87, 202, 461 |
| AoxI | GGCC | 1 cut(s) | 289 |
| ApeKI | GCWGC | 1 cut(s) | 161 |
| ApoI | RAATTY | 1 cut(s) | 49 |
| AsuHPI | GGTGA | 1 cut(s) | 515 |
| BbsI | GAAGAC | 1 cut(s) | 279 |
| BbvI | GCAGC | 1 cut(s) | 173 |
| BccI | CCATC | 1 cut(s) | 65 |
| BciT130I | CCWGG | 1 cut(s) | 95 |
| BcoDI | GTCTC | 4 cut(s) | 80, 87, 202, 461 |
| BfaI | CTAG | 1 cut(s) | 539 |
| BfrI | CTTAAG | 1 cut(s) | 293 |
| BglII | AGATCT | 1 cut(s) | 118 |
| BisI | GCNGC | 1 cut(s) | 162 |
| BlsI | GCNGC | 1 cut(s) | 163 |
| Bme1390I | CCNGG | 1 cut(s) | 95 |
| BmrFI | CCNGG | 1 cut(s) | 95 |
| BpiI | GAAGAC | 1 cut(s) | 279 |
| BpuEI | CTTGAG | 1 cut(s) | 62 |
| BsaI | GGTCTC | 1 cut(s) | 80 |
| Bse1I | ACTGG | 1 cut(s) | 335 |
| BseBI | CCWGG | 1 cut(s) | 95 |
| BseMII | CTCAG | 1 cut(s) | 359 |
| BseNI | ACTGG | 1 cut(s) | 335 |
| BseXI | GCAGC | 1 cut(s) | 173 |
| BsgI | GTGCAG | 1 cut(s) | 180 |
| BshFI | GGCC | 1 cut(s) | 291 |
| BsiSI | CCGG | 1 cut(s) | 230 |
| BslFI | GGGAC | 1 cut(s) | 283 |
| BsmAI | GTCTC | 4 cut(s) | 80, 87, 202, 461 |
| BsmFI | GGGAC | 1 cut(s) | 283 |
| BsnI | GGCC | 1 cut(s) | 291 |
| Bso31I | GGTCTC | 1 cut(s) | 80 |
| Bsp143I | GATC | 1 cut(s) | 118 |
| BspACI | CCGC | 1 cut(s) | 497 |
| BspANI | GGCC | 1 cut(s) | 291 |
| BspCNI | CTCAG | 1 cut(s) | 360 |
| BspTI | CTTAAG | 1 cut(s) | 293 |
| BspTNI | GGTCTC | 1 cut(s) | 80 |
| BsrI | ACTGG | 1 cut(s) | 335 |
| BssMI | GATC | 1 cut(s) | 118 |
| Bst2UI | CCWGG | 1 cut(s) | 95 |
| Bst6I | CTCTTC | 1 cut(s) | 185 |
| BstAFI | CTTAAG | 1 cut(s) | 293 |
| BstDEI | CTNAG | 1 cut(s) | 368 |
| BstKTI | GATC | 1 cut(s) | 121 |
| BstMAI | GTCTC | 4 cut(s) | 80, 87, 202, 461 |
| BstMBI | GATC | 1 cut(s) | 118 |
| BstNI | CCWGG | 1 cut(s) | 95 |
| BstNSI | RCATGY | 1 cut(s) | 481 |
| BstSCI | CCNGG | 1 cut(s) | 93 |
| BstV1I | GCAGC | 1 cut(s) | 173 |
| BstV2I | GAAGAC | 1 cut(s) | 279 |
| BstX2I | RGATCY | 1 cut(s) | 118 |
| BstYI | RGATCY | 1 cut(s) | 118 |
| BsuRI | GGCC | 1 cut(s) | 291 |
| Csp6I | GTAC | 1 cut(s) | 39 |
| CviAII | CATG | 3 cut(s) | 302, 478, 543 |
| CviJI | RGCY | 5 cut(s) | 101, 164, 196, 291, 422 |
| CviKI_1 | RGCY | 5 cut(s) | 101, 164, 196, 291, 422 |
| CviQI | GTAC | 1 cut(s) | 39 |
| DdeI | CTNAG | 1 cut(s) | 368 |
| DpnI | GATC | 1 cut(s) | 120 |
| DpnII | GATC | 1 cut(s) | 118 |
| Eam1104I | CTCTTC | 1 cut(s) | 185 |
| EarI | CTCTTC | 1 cut(s) | 185 |
| Eco31I | GGTCTC | 1 cut(s) | 80 |
| EcoRII | CCWGG | 1 cut(s) | 93 |
| EcoT22I | ATGCAT | 2 cut(s) | 6, 479 |
| FaeI | CATG | 3 cut(s) | 305, 481, 546 |
| FaqI | GGGAC | 1 cut(s) | 283 |
| FatI | CATG | 3 cut(s) | 301, 477, 542 |
| FauI | CCCGC | 1 cut(s) | 504 |
| FblI | GTMKAC | 1 cut(s) | 355 |
| Fnu4HI | GCNGC | 1 cut(s) | 162 |
| Fsp4HI | GCNGC | 1 cut(s) | 162 |
| FspBI | CTAG | 1 cut(s) | 539 |
| GluI | GCNGC | 1 cut(s) | 162 |
| HaeIII | GGCC | 1 cut(s) | 291 |
| HapII | CCGG | 1 cut(s) | 230 |
| Hin1II | CATG | 3 cut(s) | 305, 481, 546 |
| HpaII | CCGG | 1 cut(s) | 230 |
| HphI | GGTGA | 1 cut(s) | 515 |
| Hpy166II | GTNNAC | 3 cut(s) | 41, 356, 523 |
| Hpy188I | TCNGA | 1 cut(s) | 386 |
| Hpy188III | TCNNGA | 3 cut(s) | 10, 280, 425 |
| Hpy8I | GTNNAC | 3 cut(s) | 41, 356, 523 |
| HpyAV | CCTTC | 2 cut(s) | 49, 510 |
| HpyCH4V | TGCA | 6 cut(s) | 4, 106, 161, 322, 377, 477 |
| HpyF3I | CTNAG | 1 cut(s) | 368 |
| Hsp92II | CATG | 3 cut(s) | 305, 481, 546 |
| Kzo9I | GATC | 1 cut(s) | 118 |
| LpnPI | CCDG | 5 cut(s) | 80, 107, 243, 348, 410 |
| Lsp1109I | GCAGC | 1 cut(s) | 173 |
| MaeI | CTAG | 1 cut(s) | 539 |
| MaeIII | GTNAC | 1 cut(s) | 330 |
| MalI | GATC | 1 cut(s) | 120 |
| MboI | GATC | 1 cut(s) | 118 |
| MboII | GAAGA | 4 cut(s) | 25, 202, 284, 467 |
| MfeI | CAATTG | 1 cut(s) | 326 |
| MflI | RGATCY | 1 cut(s) | 118 |
| MluCI | AATT | 5 cut(s) | 49, 326, 378, 437, 446 |
| MmeI | TCCRAC | 2 cut(s) | 185, 462 |
| MnlI | CCTC | 6 cut(s) | 131, 177, 186, 339, 363, 536 |
| Mph1103I | ATGCAT | 2 cut(s) | 6, 479 |
| MseI | TTAA | 3 cut(s) | 294, 317, 402 |
| MslI | CAYNNNNRTG | 1 cut(s) | 224 |
| MspCI | CTTAAG | 1 cut(s) | 293 |
| MspI | CCGG | 1 cut(s) | 230 |
| MspR9I | CCNGG | 1 cut(s) | 95 |
| MunI | CAATTG | 1 cut(s) | 326 |
| MvaI | CCWGG | 1 cut(s) | 95 |
| NdeII | GATC | 1 cut(s) | 118 |
| NlaIII | CATG | 3 cut(s) | 305, 481, 546 |
| NsiI | ATGCAT | 2 cut(s) | 6, 479 |
| NspI | RCATGY | 1 cut(s) | 481 |
| PkrI | GCNGC | 1 cut(s) | 163 |
| Psp6I | CCWGG | 1 cut(s) | 93 |
| PspGI | CCWGG | 1 cut(s) | 93 |
| PsuI | RGATCY | 1 cut(s) | 118 |
| RsaI | GTAC | 1 cut(s) | 40 |
| RsaNI | GTAC | 1 cut(s) | 39 |
| RseI | CAYNNNNRTG | 1 cut(s) | 224 |
| SaqAI | TTAA | 3 cut(s) | 294, 317, 402 |
| SatI | GCNGC | 1 cut(s) | 162 |
| Sau3AI | GATC | 1 cut(s) | 118 |
| ScrFI | CCNGG | 1 cut(s) | 95 |
| SetI | ASST | 4 cut(s) | 96, 103, 424, 528 |
| SmiMI | CAYNNNNRTG | 1 cut(s) | 224 |
| SmlI | CTYRAG | 2 cut(s) | 77, 293 |
| SmoI | CTYRAG | 2 cut(s) | 77, 293 |
| Sse9I | AATT | 5 cut(s) | 49, 326, 378, 437, 446 |
| SsiI | CCGC | 1 cut(s) | 497 |
| SspMI | CTAG | 1 cut(s) | 539 |
| StyD4I | CCNGG | 1 cut(s) | 93 |
| TaqI | TCGA | 1 cut(s) | 9 |
| TasI | AATT | 5 cut(s) | 49, 326, 378, 437, 446 |
| Tru1I | TTAA | 3 cut(s) | 294, 317, 402 |
| Tru9I | TTAA | 3 cut(s) | 294, 317, 402 |
| TseI | GCWGC | 1 cut(s) | 161 |
| TspDTI | ATGAA | 3 cut(s) | 420, 468, 492 |
| Vha464I | CTTAAG | 1 cut(s) | 293 |
| XapI | RAATTY | 1 cut(s) | 49 |
| XceI | RCATGY | 1 cut(s) | 481 |
| XmiI | GTMKAC | 1 cut(s) | 355 |
| XspI | CTAG | 1 cut(s) | 539 |
| Zsp2I | ATGCAT | 2 cut(s) | 6, 479 |