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| Enzyme | Recognition Site | Cut Count | Positions (bp) |
|---|---|---|---|
| Acc36I | ACCTGC | 1 cut(s) | 341 |
| AcsI | RAATTY | 1 cut(s) | 35 |
| AcuI | CTGAAG | 1 cut(s) | 149 |
| AfaI | GTAC | 2 cut(s) | 85, 390 |
| AfiI | CCNNNNNNNGG | 1 cut(s) | 344 |
| AflIII | ACRYGT | 1 cut(s) | 168 |
| AgsI | TTSAA | 1 cut(s) | 103 |
| AjnI | CCWGG | 2 cut(s) | 76, 397 |
| Alw26I | GTCTC | 1 cut(s) | 353 |
| Ama87I | CYCGRG | 1 cut(s) | 215 |
| AoxI | GGCC | 1 cut(s) | 231 |
| ApoI | RAATTY | 1 cut(s) | 35 |
| AsuC2I | CCSGG | 2 cut(s) | 216, 217 |
| AsuHPI | GGTGA | 1 cut(s) | 71 |
| AsuII | TTCGAA | 1 cut(s) | 184 |
| AvaI | CYCGRG | 1 cut(s) | 215 |
| BbsI | GAAGAC | 1 cut(s) | 26 |
| BccI | CCATC | 1 cut(s) | 50 |
| BciT130I | CCWGG | 2 cut(s) | 78, 399 |
| BcnI | CCSGG | 2 cut(s) | 216, 217 |
| BcoDI | GTCTC | 1 cut(s) | 353 |
| BfaI | CTAG | 1 cut(s) | 354 |
| BfuAI | ACCTGC | 1 cut(s) | 341 |
| Bme1390I | CCNGG | 4 cut(s) | 78, 216, 217, 399 |
| BmeT110I | CYCGRG | 1 cut(s) | 215 |
| BmiI | GGNNCC | 1 cut(s) | 396 |
| BmrFI | CCNGG | 4 cut(s) | 78, 216, 217, 399 |
| BmsI | GCATC | 2 cut(s) | 142, 313 |
| BpiI | GAAGAC | 1 cut(s) | 26 |
| Bpu14I | TTCGAA | 1 cut(s) | 184 |
| BpuMI | CCSGG | 2 cut(s) | 216, 217 |
| BsaI | GGTCTC | 1 cut(s) | 353 |
| BsaJI | CCNNGG | 4 cut(s) | 76, 214, 215, 398 |
| Bsc4I | CCNNNNNNNGG | 1 cut(s) | 344 |
| BseBI | CCWGG | 2 cut(s) | 78, 399 |
| BseDI | CCNNGG | 4 cut(s) | 76, 214, 215, 398 |
| BseGI | GGATG | 1 cut(s) | 61 |
| BseLI | CCNNNNNNNGG | 1 cut(s) | 344 |
| BseRI | GAGGAG | 1 cut(s) | 22 |
| BshFI | GGCC | 1 cut(s) | 233 |
| BsiHKCI | CYCGRG | 1 cut(s) | 215 |
| BsiSI | CCGG | 1 cut(s) | 216 |
| BslFI | GGGAC | 1 cut(s) | 197 |
| BslI | CCNNNNNNNGG | 1 cut(s) | 344 |
| BsmAI | GTCTC | 1 cut(s) | 353 |
| BsmFI | GGGAC | 1 cut(s) | 197 |
| BsnI | GGCC | 1 cut(s) | 233 |
| Bso31I | GGTCTC | 1 cut(s) | 353 |
| BsoBI | CYCGRG | 1 cut(s) | 215 |
| Bsp119I | TTCGAA | 1 cut(s) | 184 |
| BspANI | GGCC | 1 cut(s) | 233 |
| BspLI | GGNNCC | 1 cut(s) | 396 |
| BspMI | ACCTGC | 1 cut(s) | 341 |
| BspT104I | TTCGAA | 1 cut(s) | 184 |
| BspTNI | GGTCTC | 1 cut(s) | 353 |
| BssECI | CCNNGG | 4 cut(s) | 76, 214, 215, 398 |
| Bst2UI | CCWGG | 2 cut(s) | 78, 399 |
| Bst4CI | ACNGT | 1 cut(s) | 296 |
| BstBI | TTCGAA | 1 cut(s) | 184 |
| BstF5I | GGATG | 1 cut(s) | 61 |
| BstMAI | GTCTC | 1 cut(s) | 353 |
| BstNI | CCWGG | 2 cut(s) | 78, 399 |
| BstNSI | RCATGY | 3 cut(s) | 172, 281, 285 |
| BstSCI | CCNGG | 4 cut(s) | 76, 214, 215, 397 |
| BstV2I | GAAGAC | 1 cut(s) | 26 |
| BsuRI | GGCC | 1 cut(s) | 233 |
| BtsCI | GGATG | 1 cut(s) | 61 |
| BveI | ACCTGC | 1 cut(s) | 341 |
| Cfr9I | CCCGGG | 1 cut(s) | 215 |
| Csp6I | GTAC | 2 cut(s) | 84, 389 |
| CviAII | CATG | 4 cut(s) | 140, 169, 278, 282 |
| CviJI | RGCY | 1 cut(s) | 233 |
| CviKI_1 | RGCY | 1 cut(s) | 233 |
| CviQI | GTAC | 2 cut(s) | 84, 389 |
| Eco31I | GGTCTC | 1 cut(s) | 353 |
| Eco57I | CTGAAG | 1 cut(s) | 149 |
| Eco88I | CYCGRG | 1 cut(s) | 215 |
| EcoRII | CCWGG | 2 cut(s) | 76, 397 |
| EcoT22I | ATGCAT | 1 cut(s) | 283 |
| FaeI | CATG | 4 cut(s) | 143, 172, 281, 285 |
| FalI | AAGNNNNNCTT | 2 cut(s) | 139, 171 |
| FaqI | GGGAC | 1 cut(s) | 197 |
| FatI | CATG | 4 cut(s) | 139, 168, 277, 281 |
| FokI | GGATG | 1 cut(s) | 68 |
| FspBI | CTAG | 1 cut(s) | 354 |
| HaeIII | GGCC | 1 cut(s) | 233 |
| HapII | CCGG | 1 cut(s) | 216 |
| Hin1II | CATG | 4 cut(s) | 143, 172, 281, 285 |
| HinfI | GANTC | 1 cut(s) | 22 |
| HpaII | CCGG | 1 cut(s) | 216 |
| HphI | GGTGA | 1 cut(s) | 71 |
| Hpy188I | TCNGA | 3 cut(s) | 18, 31, 129 |
| Hpy188III | TCNNGA | 1 cut(s) | 197 |
| HpyAV | CCTTC | 3 cut(s) | 124, 194, 397 |
| HpyCH4III | ACNGT | 1 cut(s) | 296 |
| HpyCH4V | TGCA | 1 cut(s) | 281 |
| Hsp92II | CATG | 4 cut(s) | 143, 172, 281, 285 |
| LpnPI | CCDG | 7 cut(s) | 63, 90, 210, 229, 346, 384, 411 |
| LweI | GCATC | 2 cut(s) | 142, 313 |
| MaeI | CTAG | 1 cut(s) | 354 |
| MboII | GAAGA | 1 cut(s) | 31 |
| MluCI | AATT | 1 cut(s) | 35 |
| MlyI | GAGTC | 1 cut(s) | 16 |
| MmeI | TCCRAC | 1 cut(s) | 189 |
| MnlI | CCTC | 3 cut(s) | 46, 78, 223 |
| Mph1103I | ATGCAT | 1 cut(s) | 283 |
| MseI | TTAA | 3 cut(s) | 41, 114, 146 |
| MslI | CAYNNNNRTG | 1 cut(s) | 185 |
| MspI | CCGG | 1 cut(s) | 216 |
| MspR9I | CCNGG | 4 cut(s) | 78, 216, 217, 399 |
| MvaI | CCWGG | 2 cut(s) | 78, 399 |
| NciI | CCSGG | 2 cut(s) | 216, 217 |
| NlaIII | CATG | 4 cut(s) | 143, 172, 281, 285 |
| NlaIV | GGNNCC | 1 cut(s) | 396 |
| NsiI | ATGCAT | 1 cut(s) | 283 |
| NspI | RCATGY | 3 cut(s) | 172, 281, 285 |
| NspV | TTCGAA | 1 cut(s) | 184 |
| PciI | ACATGT | 1 cut(s) | 168 |
| PleI | GAGTC | 1 cut(s) | 16 |
| PpsI | GAGTC | 1 cut(s) | 16 |
| PscI | ACATGT | 1 cut(s) | 168 |
| Psp6I | CCWGG | 2 cut(s) | 76, 397 |
| PspGI | CCWGG | 2 cut(s) | 76, 397 |
| PspN4I | GGNNCC | 1 cut(s) | 396 |
| RsaI | GTAC | 2 cut(s) | 85, 390 |
| RsaNI | GTAC | 2 cut(s) | 84, 389 |
| RseI | CAYNNNNRTG | 1 cut(s) | 185 |
| SaqAI | TTAA | 3 cut(s) | 41, 114, 146 |
| SchI | GAGTC | 1 cut(s) | 16 |
| ScrFI | CCNGG | 4 cut(s) | 78, 216, 217, 399 |
| SetI | ASST | 6 cut(s) | 47, 70, 205, 335, 359, 408 |
| SfaNI | GCATC | 2 cut(s) | 142, 313 |
| SfuI | TTCGAA | 1 cut(s) | 184 |
| SmaI | CCCGGG | 1 cut(s) | 217 |
| SmiMI | CAYNNNNRTG | 1 cut(s) | 185 |
| Sse9I | AATT | 1 cut(s) | 35 |
| SspMI | CTAG | 1 cut(s) | 354 |
| StyD4I | CCNGG | 4 cut(s) | 76, 214, 215, 397 |
| TaaI | ACNGT | 1 cut(s) | 296 |
| TaqI | TCGA | 2 cut(s) | 51, 184 |
| TasI | AATT | 1 cut(s) | 35 |
| Tru1I | TTAA | 3 cut(s) | 41, 114, 146 |
| Tru9I | TTAA | 3 cut(s) | 41, 114, 146 |
| TspDTI | ATGAA | 4 cut(s) | 48, 222, 240, 282 |
| TspMI | CCCGGG | 1 cut(s) | 215 |
| XapI | RAATTY | 1 cut(s) | 35 |
| XceI | RCATGY | 3 cut(s) | 172, 281, 285 |
| XmaI | CCCGGG | 1 cut(s) | 215 |
| XspI | CTAG | 1 cut(s) | 354 |
| Zsp2I | ATGCAT | 1 cut(s) | 283 |