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| Enzyme | Recognition Site | Cut Count | Positions (bp) |
|---|---|---|---|
| Acc65I | GGTACC | 1 cut(s) | 628 |
| AccB1I | GGYRCC | 1 cut(s) | 628 |
| AccB7I | CCANNNNNTGG | 1 cut(s) | 806 |
| AccI | GTMKAC | 2 cut(s) | 396, 786 |
| AciI | CCGC | 1 cut(s) | 751 |
| AclWI | GGATC | 2 cut(s) | 177, 809 |
| AcoI | YGGCCR | 2 cut(s) | 797, 893 |
| AcsI | RAATTY | 2 cut(s) | 62, 803 |
| AcuI | CTGAAG | 1 cut(s) | 288 |
| AfaI | GTAC | 4 cut(s) | 446, 457, 630, 650 |
| AfiI | CCNNNNNNNGG | 4 cut(s) | 258, 578, 774, 806 |
| AflII | CTTAAG | 1 cut(s) | 68 |
| AflIII | ACRYGT | 1 cut(s) | 575 |
| AgsI | TTSAA | 3 cut(s) | 153, 367, 686 |
| AjnI | CCWGG | 1 cut(s) | 448 |
| AluBI | AGCT | 4 cut(s) | 49, 272, 440, 867 |
| AluI | AGCT | 4 cut(s) | 49, 272, 440, 867 |
| AlwI | GGATC | 2 cut(s) | 177, 809 |
| AoxI | GGCC | 2 cut(s) | 797, 893 |
| ApoI | RAATTY | 2 cut(s) | 62, 803 |
| Asp718I | GGTACC | 1 cut(s) | 628 |
| AspA2I | CCTAGG | 1 cut(s) | 818 |
| AspLEI | GCGC | 1 cut(s) | 678 |
| AsuC2I | CCSGG | 1 cut(s) | 633 |
| AsuHPI | GGTGA | 1 cut(s) | 359 |
| AvrII | CCTAGG | 1 cut(s) | 818 |
| BalI | TGGCCA | 2 cut(s) | 799, 895 |
| BanI | GGYRCC | 1 cut(s) | 628 |
| BccI | CCATC | 4 cut(s) | 134, 293, 422, 842 |
| BciT130I | CCWGG | 1 cut(s) | 450 |
| BcnI | CCSGG | 1 cut(s) | 633 |
| BfaI | CTAG | 4 cut(s) | 50, 90, 234, 819 |
| BfmI | CTRYAG | 2 cut(s) | 276, 862 |
| BfrI | CTTAAG | 1 cut(s) | 68 |
| BisI | GCNGC | 1 cut(s) | 752 |
| BlnI | CCTAGG | 1 cut(s) | 818 |
| BlsI | GCNGC | 1 cut(s) | 753 |
| Bme1390I | CCNGG | 2 cut(s) | 450, 633 |
| BmiI | GGNNCC | 2 cut(s) | 630, 824 |
| BmrFI | CCNGG | 2 cut(s) | 450, 633 |
| BmsI | GCATC | 3 cut(s) | 6, 754, 763 |
| BpuMI | CCSGG | 1 cut(s) | 633 |
| BsaJI | CCNNGG | 4 cut(s) | 448, 632, 665, 818 |
| BsaXI | ACNNNNNCTCC | 4 cut(s) | 537, 567, 575, 605 |
| Bsc4I | CCNNNNNNNGG | 4 cut(s) | 258, 578, 774, 806 |
| Bse1I | ACTGG | 1 cut(s) | 896 |
| Bse3DI | GCAATG | 1 cut(s) | 246 |
| BseBI | CCWGG | 1 cut(s) | 450 |
| BseDI | CCNNGG | 4 cut(s) | 448, 632, 665, 818 |
| BseGI | GGATG | 6 cut(s) | 21, 358, 385, 433, 745, 754 |
| BseLI | CCNNNNNNNGG | 4 cut(s) | 258, 578, 774, 806 |
| BseMI | GCAATG | 1 cut(s) | 246 |
| BseNI | ACTGG | 1 cut(s) | 896 |
| BseYI | CCCAGC | 1 cut(s) | 371 |
| BshFI | GGCC | 2 cut(s) | 799, 895 |
| BshNI | GGYRCC | 1 cut(s) | 628 |
| BsiSI | CCGG | 2 cut(s) | 632, 758 |
| BslFI | GGGAC | 2 cut(s) | 157, 898 |
| BslI | CCNNNNNNNGG | 4 cut(s) | 258, 578, 774, 806 |
| BsmFI | GGGAC | 2 cut(s) | 157, 898 |
| BsmI | GAATGC | 2 cut(s) | 91, 253 |
| BsnI | GGCC | 2 cut(s) | 799, 895 |
| Bsp143I | GATC | 4 cut(s) | 32, 169, 325, 814 |
| BspACI | CCGC | 1 cut(s) | 751 |
| BspANI | GGCC | 2 cut(s) | 799, 895 |
| BspLI | GGNNCC | 2 cut(s) | 630, 824 |
| BspPI | GGATC | 2 cut(s) | 177, 809 |
| BspT107I | GGYRCC | 1 cut(s) | 628 |
| BspTI | CTTAAG | 1 cut(s) | 68 |
| BsrDI | GCAATG | 1 cut(s) | 246 |
| BsrI | ACTGG | 1 cut(s) | 896 |
| BssECI | CCNNGG | 4 cut(s) | 448, 632, 665, 818 |
| BssMI | GATC | 4 cut(s) | 32, 169, 325, 814 |
| BssT1I | CCWWGG | 1 cut(s) | 818 |
| Bst2UI | CCWGG | 1 cut(s) | 450 |
| Bst4CI | ACNGT | 2 cut(s) | 277, 669 |
| Bst6I | CTCTTC | 1 cut(s) | 285 |
| BstAFI | CTTAAG | 1 cut(s) | 68 |
| BstC8I | GCNNGC | 2 cut(s) | 21, 720 |
| BstDEI | CTNAG | 1 cut(s) | 827 |
| BstDSI | CCRYGG | 1 cut(s) | 665 |
| BstF5I | GGATG | 6 cut(s) | 21, 358, 385, 433, 745, 754 |
| BstHHI | GCGC | 1 cut(s) | 678 |
| BstKTI | GATC | 4 cut(s) | 35, 172, 328, 817 |
| BstMBI | GATC | 4 cut(s) | 32, 169, 325, 814 |
| BstNI | CCWGG | 1 cut(s) | 450 |
| BstNSI | RCATGY | 6 cut(s) | 23, 531, 554, 579, 682, 722 |
| BstSCI | CCNGG | 2 cut(s) | 448, 631 |
| BstSFI | CTRYAG | 2 cut(s) | 276, 862 |
| BsuRI | GGCC | 2 cut(s) | 799, 895 |
| BtgI | CCRYGG | 1 cut(s) | 665 |
| BtsCI | GGATG | 6 cut(s) | 21, 358, 385, 433, 745, 754 |
| Cac8I | GCNNGC | 2 cut(s) | 21, 720 |
| CfoI | GCGC | 1 cut(s) | 678 |
| Csp6I | GTAC | 4 cut(s) | 445, 456, 629, 649 |
| CviAII | CATG | 8 cut(s) | 20, 512, 528, 551, 576, 679, 719, 774 |
| CviJI | RGCY | 8 cut(s) | 49, 272, 344, 440, 799, 852, 867, 895 |
| CviKI_1 | RGCY | 8 cut(s) | 49, 272, 344, 440, 799, 852, 867, 895 |
| CviQI | GTAC | 4 cut(s) | 445, 456, 629, 649 |
| DdeI | CTNAG | 1 cut(s) | 827 |
| DpnI | GATC | 4 cut(s) | 34, 171, 327, 816 |
| DpnII | GATC | 4 cut(s) | 32, 169, 325, 814 |
| EaeI | YGGCCR | 2 cut(s) | 797, 893 |
| Eam1104I | CTCTTC | 1 cut(s) | 285 |
| EarI | CTCTTC | 1 cut(s) | 285 |
| Eco130I | CCWWGG | 1 cut(s) | 818 |
| Eco57I | CTGAAG | 1 cut(s) | 288 |
| EcoRII | CCWGG | 1 cut(s) | 448 |
| EcoT14I | CCWWGG | 1 cut(s) | 818 |
| EcoT22I | ATGCAT | 1 cut(s) | 21 |
| ErhI | CCWWGG | 1 cut(s) | 818 |
| FaeI | CATG | 8 cut(s) | 23, 515, 531, 554, 579, 682, 722, 777 |
| FaqI | GGGAC | 2 cut(s) | 157, 898 |
| FatI | CATG | 8 cut(s) | 19, 511, 527, 550, 575, 678, 718, 773 |
| FblI | GTMKAC | 2 cut(s) | 396, 786 |
| Fnu4HI | GCNGC | 1 cut(s) | 752 |
| FokI | GGATG | 6 cut(s) | 28, 365, 392, 440, 741, 752 |
| Fsp4HI | GCNGC | 1 cut(s) | 752 |
| FspBI | CTAG | 4 cut(s) | 50, 90, 234, 819 |
| GlaI | GCGC | 1 cut(s) | 677 |
| GluI | GCNGC | 1 cut(s) | 752 |
| GsaI | CCCAGC | 1 cut(s) | 375 |
| HaeIII | GGCC | 2 cut(s) | 799, 895 |
| HapII | CCGG | 2 cut(s) | 632, 758 |
| HhaI | GCGC | 1 cut(s) | 678 |
| Hin1II | CATG | 8 cut(s) | 23, 515, 531, 554, 579, 682, 722, 777 |
| Hin6I | GCGC | 1 cut(s) | 676 |
| HinP1I | GCGC | 1 cut(s) | 676 |
| HindIII | AAGCTT | 1 cut(s) | 438 |
| HinfI | GANTC | 3 cut(s) | 398, 584, 831 |
| HpaII | CCGG | 2 cut(s) | 632, 758 |
| HphI | GGTGA | 1 cut(s) | 359 |
| Hpy166II | GTNNAC | 2 cut(s) | 397, 787 |
| Hpy188I | TCNGA | 3 cut(s) | 268, 538, 847 |
| Hpy188III | TCNNGA | 2 cut(s) | 82, 915 |
| Hpy8I | GTNNAC | 2 cut(s) | 397, 787 |
| HpyAV | CCTTC | 3 cut(s) | 251, 631, 730 |
| HpyCH4III | ACNGT | 2 cut(s) | 277, 669 |
| HpyCH4IV | ACGT | 2 cut(s) | 146, 911 |
| HpyCH4V | TGCA | 1 cut(s) | 19 |
| HpyF3I | CTNAG | 1 cut(s) | 827 |
| HpySE526I | ACGT | 2 cut(s) | 146, 911 |
| Hsp92II | CATG | 8 cut(s) | 23, 515, 531, 554, 579, 682, 722, 777 |
| HspAI | GCGC | 1 cut(s) | 676 |
| KpnI | GGTACC | 1 cut(s) | 632 |
| Kzo9I | GATC | 4 cut(s) | 32, 169, 325, 814 |
| LmnI | GCTCC | 1 cut(s) | 302 |
| LweI | GCATC | 3 cut(s) | 6, 754, 763 |
| MaeI | CTAG | 4 cut(s) | 50, 90, 234, 819 |
| MaeII | ACGT | 2 cut(s) | 146, 911 |
| MaeIII | GTNAC | 2 cut(s) | 200, 907 |
| MalI | GATC | 4 cut(s) | 34, 171, 327, 816 |
| MboI | GATC | 4 cut(s) | 32, 169, 325, 814 |
| MboII | GAAGA | 2 cut(s) | 42, 302 |
| MlsI | TGGCCA | 2 cut(s) | 799, 895 |
| MluCI | AATT | 4 cut(s) | 62, 153, 596, 803 |
| MluNI | TGGCCA | 2 cut(s) | 799, 895 |
| MlyI | GAGTC | 3 cut(s) | 392, 593, 825 |
| MnlI | CCTC | 6 cut(s) | 52, 241, 286, 343, 370, 418 |
| Mox20I | TGGCCA | 2 cut(s) | 799, 895 |
| Mph1103I | ATGCAT | 1 cut(s) | 21 |
| MscI | TGGCCA | 2 cut(s) | 799, 895 |
| MseI | TTAA | 5 cut(s) | 69, 473, 501, 672, 855 |
| MslI | CAYNNNNRTG | 2 cut(s) | 42, 723 |
| Msp20I | TGGCCA | 2 cut(s) | 799, 895 |
| MspCI | CTTAAG | 1 cut(s) | 68 |
| MspI | CCGG | 2 cut(s) | 632, 758 |
| MspR9I | CCNGG | 2 cut(s) | 450, 633 |
| Mva1269I | GAATGC | 2 cut(s) | 91, 253 |
| MvaI | CCWGG | 1 cut(s) | 450 |
| NciI | CCSGG | 1 cut(s) | 633 |
| NdeII | GATC | 4 cut(s) | 32, 169, 325, 814 |
| NlaIII | CATG | 8 cut(s) | 23, 515, 531, 554, 579, 682, 722, 777 |
| NlaIV | GGNNCC | 2 cut(s) | 630, 824 |
| NsiI | ATGCAT | 1 cut(s) | 21 |
| NspI | RCATGY | 6 cut(s) | 23, 531, 554, 579, 682, 722 |
| PaeI | GCATGC | 2 cut(s) | 23, 722 |
| PciI | ACATGT | 1 cut(s) | 575 |
| PctI | GAATGC | 2 cut(s) | 91, 253 |
| PflMI | CCANNNNNTGG | 1 cut(s) | 806 |
| PkrI | GCNGC | 1 cut(s) | 753 |
| PleI | GAGTC | 3 cut(s) | 392, 592, 825 |
| PpsI | GAGTC | 3 cut(s) | 392, 592, 825 |
| PscI | ACATGT | 1 cut(s) | 575 |
| Psp6I | CCWGG | 1 cut(s) | 448 |
| PspFI | CCCAGC | 1 cut(s) | 371 |
| PspGI | CCWGG | 1 cut(s) | 448 |
| PspN4I | GGNNCC | 2 cut(s) | 630, 824 |
| RsaI | GTAC | 4 cut(s) | 446, 457, 630, 650 |
| RsaNI | GTAC | 4 cut(s) | 445, 456, 629, 649 |
| RseI | CAYNNNNRTG | 2 cut(s) | 42, 723 |
| SaqAI | TTAA | 5 cut(s) | 69, 473, 501, 672, 855 |
| SatI | GCNGC | 1 cut(s) | 752 |
| Sau3AI | GATC | 4 cut(s) | 32, 169, 325, 814 |
| SchI | GAGTC | 3 cut(s) | 392, 593, 825 |
| ScrFI | CCNGG | 2 cut(s) | 450, 633 |
| SfaNI | GCATC | 3 cut(s) | 6, 754, 763 |
| SfcI | CTRYAG | 2 cut(s) | 276, 862 |
| SmiMI | CAYNNNNRTG | 2 cut(s) | 42, 723 |
| SmlI | CTYRAG | 1 cut(s) | 68 |
| SmoI | CTYRAG | 1 cut(s) | 68 |
| SphI | GCATGC | 2 cut(s) | 23, 722 |
| Sse9I | AATT | 4 cut(s) | 62, 153, 596, 803 |
| SsiI | CCGC | 1 cut(s) | 751 |
| SspI | AATATT | 1 cut(s) | 884 |
| SspMI | CTAG | 4 cut(s) | 50, 90, 234, 819 |
| StyD4I | CCNGG | 2 cut(s) | 448, 631 |
| StyI | CCWWGG | 1 cut(s) | 818 |
| TaaI | ACNGT | 2 cut(s) | 277, 669 |
| TaiI | ACGT | 2 cut(s) | 149, 914 |
| TaqI | TCGA | 5 cut(s) | 81, 99, 401, 423, 689 |
| TasI | AATT | 4 cut(s) | 62, 153, 596, 803 |
| TauI | GCSGC | 1 cut(s) | 754 |
| Tru1I | TTAA | 5 cut(s) | 69, 473, 501, 672, 855 |
| Tru9I | TTAA | 5 cut(s) | 69, 473, 501, 672, 855 |
| TspDTI | ATGAA | 4 cut(s) | 260, 270, 428, 741 |
| TspGWI | ACGGA | 1 cut(s) | 237 |
| Van91I | CCANNNNNTGG | 1 cut(s) | 806 |
| Vha464I | CTTAAG | 1 cut(s) | 68 |
| XapI | RAATTY | 2 cut(s) | 62, 803 |
| XceI | RCATGY | 6 cut(s) | 23, 531, 554, 579, 682, 722 |
| XmaJI | CCTAGG | 1 cut(s) | 818 |
| XmiI | GTMKAC | 2 cut(s) | 396, 786 |
| XspI | CTAG | 4 cut(s) | 50, 90, 234, 819 |
| Zsp2I | ATGCAT | 1 cut(s) | 21 |