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| Enzyme | Recognition Site | Cut Count | Positions (bp) |
|---|---|---|---|
| AanI | TTATAA | 1 cut(s) | 788 |
| AclI | AACGTT | 1 cut(s) | 458 |
| AclWI | GGATC | 1 cut(s) | 753 |
| AcsI | RAATTY | 1 cut(s) | 288 |
| AfaI | GTAC | 2 cut(s) | 140, 155 |
| AfiI | CCNNNNNNNGG | 3 cut(s) | 150, 338, 669 |
| AgsI | TTSAA | 6 cut(s) | 169, 230, 266, 472, 658, 956 |
| AjuI | GAANNNNNNNTTGG | 2 cut(s) | 613, 645 |
| AleI | CACNNNNGTG | 1 cut(s) | 390 |
| AloI | GAACNNNNNNTCC | 2 cut(s) | 443, 475 |
| AluBI | AGCT | 3 cut(s) | 236, 829, 966 |
| AluI | AGCT | 3 cut(s) | 236, 829, 966 |
| AlwI | GGATC | 1 cut(s) | 753 |
| AoxI | GGCC | 1 cut(s) | 601 |
| ApeKI | GCWGC | 1 cut(s) | 829 |
| ApoI | RAATTY | 1 cut(s) | 288 |
| Asp700I | GAANNNNTTC | 1 cut(s) | 164 |
| AspLEI | GCGC | 1 cut(s) | 344 |
| AspS9I | GGNCC | 2 cut(s) | 116, 602 |
| AsuC2I | CCSGG | 1 cut(s) | 671 |
| AsuNHI | GCTAGC | 1 cut(s) | 379 |
| AvaII | GGWCC | 1 cut(s) | 116 |
| AxyI | CCTNAGG | 1 cut(s) | 198 |
| BbvI | GCAGC | 1 cut(s) | 816 |
| BccI | CCATC | 5 cut(s) | 126, 586, 883, 896, 926 |
| BciVI | GTATCC | 2 cut(s) | 269, 689 |
| BcnI | CCSGG | 1 cut(s) | 671 |
| BfaI | CTAG | 3 cut(s) | 380, 465, 915 |
| BfmI | CTRYAG | 1 cut(s) | 237 |
| BfuI | GTATCC | 2 cut(s) | 269, 689 |
| BisI | GCNGC | 1 cut(s) | 830 |
| BlpI | GCTNAGC | 1 cut(s) | 417 |
| BlsI | GCNGC | 1 cut(s) | 831 |
| Bme1390I | CCNGG | 1 cut(s) | 671 |
| Bme18I | GGWCC | 1 cut(s) | 116 |
| BmgT120I | GGNCC | 2 cut(s) | 116, 602 |
| BmrFI | CCNGG | 1 cut(s) | 671 |
| BmsI | GCATC | 4 cut(s) | 262, 366, 403, 709 |
| BmtI | GCTAGC | 1 cut(s) | 383 |
| Bpu1102I | GCTNAGC | 1 cut(s) | 417 |
| BpuMI | CCSGG | 1 cut(s) | 671 |
| BsaBI | GATNNNNATC | 1 cut(s) | 906 |
| BsaJI | CCNNGG | 3 cut(s) | 348, 741, 755 |
| BsaWI | WCCGGW | 1 cut(s) | 118 |
| BsaXI | ACNNNNNCTCC | 2 cut(s) | 443, 473 |
| Bsc4I | CCNNNNNNNGG | 3 cut(s) | 150, 338, 669 |
| Bse1I | ACTGG | 1 cut(s) | 527 |
| Bse21I | CCTNAGG | 1 cut(s) | 198 |
| Bse3DI | GCAATG | 1 cut(s) | 729 |
| Bse8I | GATNNNNATC | 1 cut(s) | 906 |
| BseDI | CCNNGG | 3 cut(s) | 348, 741, 755 |
| BseGI | GGATG | 3 cut(s) | 141, 495, 597 |
| BseJI | GATNNNNATC | 1 cut(s) | 906 |
| BseLI | CCNNNNNNNGG | 3 cut(s) | 150, 338, 669 |
| BseMI | GCAATG | 1 cut(s) | 729 |
| BseMII | CTCAG | 3 cut(s) | 189, 204, 431 |
| BseNI | ACTGG | 1 cut(s) | 527 |
| BseXI | GCAGC | 1 cut(s) | 816 |
| BshFI | GGCC | 1 cut(s) | 603 |
| BsiSI | CCGG | 2 cut(s) | 119, 670 |
| BslFI | GGGAC | 2 cut(s) | 533, 686 |
| BslI | CCNNNNNNNGG | 3 cut(s) | 150, 338, 669 |
| BsmFI | GGGAC | 2 cut(s) | 533, 686 |
| BsnI | GGCC | 1 cut(s) | 603 |
| Bsp143I | GATC | 2 cut(s) | 253, 745 |
| Bsp1720I | GCTNAGC | 1 cut(s) | 417 |
| Bsp19I | CCATGG | 1 cut(s) | 348 |
| BspANI | GGCC | 1 cut(s) | 603 |
| BspCNI | CTCAG | 3 cut(s) | 190, 205, 430 |
| BspHI | TCATGA | 1 cut(s) | 973 |
| BspOI | GCTAGC | 1 cut(s) | 383 |
| BspPI | GGATC | 1 cut(s) | 753 |
| BspQI | GCTCTTC | 1 cut(s) | 819 |
| BsrDI | GCAATG | 1 cut(s) | 729 |
| BsrI | ACTGG | 1 cut(s) | 527 |
| BssECI | CCNNGG | 3 cut(s) | 348, 741, 755 |
| BssMI | GATC | 2 cut(s) | 253, 745 |
| BssT1I | CCWWGG | 3 cut(s) | 348, 741, 755 |
| Bst4CI | ACNGT | 5 cut(s) | 25, 85, 283, 324, 677 |
| Bst6I | CTCTTC | 1 cut(s) | 819 |
| BstC8I | GCNNGC | 3 cut(s) | 6, 381, 968 |
| BstDEI | CTNAG | 3 cut(s) | 198, 213, 417 |
| BstDSI | CCRYGG | 1 cut(s) | 348 |
| BstENI | CCTNNNNNAGG | 1 cut(s) | 148 |
| BstF5I | GGATG | 3 cut(s) | 141, 495, 597 |
| BstHHI | GCGC | 1 cut(s) | 344 |
| BstKTI | GATC | 2 cut(s) | 256, 748 |
| BstMBI | GATC | 2 cut(s) | 253, 745 |
| BstSCI | CCNGG | 1 cut(s) | 669 |
| BstSFI | CTRYAG | 1 cut(s) | 237 |
| BstV1I | GCAGC | 1 cut(s) | 816 |
| BstXI | CCANNNNNNTGG | 1 cut(s) | 644 |
| Bsu36I | CCTNAGG | 1 cut(s) | 198 |
| BsuI | GTATCC | 2 cut(s) | 269, 689 |
| BsuRI | GGCC | 1 cut(s) | 603 |
| BtgI | CCRYGG | 1 cut(s) | 348 |
| BtgZI | GCGATG | 1 cut(s) | 951 |
| BtsCI | GGATG | 3 cut(s) | 141, 495, 597 |
| BtsIMutI | CAGTG | 2 cut(s) | 279, 329 |
| Cac8I | GCNNGC | 3 cut(s) | 6, 381, 968 |
| CciI | TCATGA | 1 cut(s) | 973 |
| CfoI | GCGC | 1 cut(s) | 344 |
| Cfr13I | GGNCC | 2 cut(s) | 116, 602 |
| Csp6I | GTAC | 2 cut(s) | 139, 154 |
| CviAII | CATG | 6 cut(s) | 157, 349, 430, 638, 833, 974 |
| CviJI | RGCY | 7 cut(s) | 236, 303, 421, 603, 829, 913, 966 |
| CviKI_1 | RGCY | 7 cut(s) | 236, 303, 421, 603, 829, 913, 966 |
| CviQI | GTAC | 2 cut(s) | 139, 154 |
| DdeI | CTNAG | 3 cut(s) | 198, 213, 417 |
| DpnI | GATC | 2 cut(s) | 255, 747 |
| DpnII | GATC | 2 cut(s) | 253, 745 |
| Eam1104I | CTCTTC | 1 cut(s) | 819 |
| EarI | CTCTTC | 1 cut(s) | 819 |
| Eco130I | CCWWGG | 3 cut(s) | 348, 741, 755 |
| Eco47I | GGWCC | 1 cut(s) | 116 |
| Eco81I | CCTNAGG | 1 cut(s) | 198 |
| EcoNI | CCTNNNNNAGG | 1 cut(s) | 148 |
| EcoRI | GAATTC | 1 cut(s) | 288 |
| EcoT14I | CCWWGG | 3 cut(s) | 348, 741, 755 |
| ErhI | CCWWGG | 3 cut(s) | 348, 741, 755 |
| FaeI | CATG | 6 cut(s) | 160, 352, 433, 641, 836, 977 |
| FalI | AAGNNNNNCTT | 2 cut(s) | 613, 645 |
| FaqI | GGGAC | 2 cut(s) | 533, 686 |
| FatI | CATG | 6 cut(s) | 156, 348, 429, 637, 832, 973 |
| FauNDI | CATATG | 2 cut(s) | 438, 924 |
| Fnu4HI | GCNGC | 1 cut(s) | 830 |
| FokI | GGATG | 3 cut(s) | 148, 502, 604 |
| Fsp4HI | GCNGC | 1 cut(s) | 830 |
| FspBI | CTAG | 3 cut(s) | 380, 465, 915 |
| GlaI | GCGC | 1 cut(s) | 343 |
| GluI | GCNGC | 1 cut(s) | 830 |
| HaeIII | GGCC | 1 cut(s) | 603 |
| HapII | CCGG | 2 cut(s) | 119, 670 |
| HhaI | GCGC | 1 cut(s) | 344 |
| Hin1II | CATG | 6 cut(s) | 160, 352, 433, 641, 836, 977 |
| Hin6I | GCGC | 1 cut(s) | 342 |
| HinP1I | GCGC | 1 cut(s) | 342 |
| HincII | GTYRAC | 2 cut(s) | 456, 652 |
| HindII | GTYRAC | 2 cut(s) | 456, 652 |
| HindIII | AAGCTT | 1 cut(s) | 964 |
| HinfI | GANTC | 2 cut(s) | 73, 468 |
| HpaI | GTTAAC | 1 cut(s) | 456 |
| HpaII | CCGG | 2 cut(s) | 119, 670 |
| Hpy166II | GTNNAC | 2 cut(s) | 456, 652 |
| Hpy188I | TCNGA | 6 cut(s) | 131, 253, 577, 683, 693, 867 |
| Hpy188III | TCNNGA | 4 cut(s) | 197, 472, 560, 974 |
| Hpy8I | GTNNAC | 2 cut(s) | 456, 652 |
| HpyAV | CCTTC | 1 cut(s) | 63 |
| HpyCH4III | ACNGT | 5 cut(s) | 25, 85, 283, 324, 677 |
| HpyCH4IV | ACGT | 1 cut(s) | 458 |
| HpyCH4V | TGCA | 8 cut(s) | 4, 327, 442, 542, 722, 727, 734, 832 |
| HpyF3I | CTNAG | 3 cut(s) | 198, 213, 417 |
| HpySE526I | ACGT | 1 cut(s) | 458 |
| Hsp92II | CATG | 6 cut(s) | 160, 352, 433, 641, 836, 977 |
| HspAI | GCGC | 1 cut(s) | 342 |
| KspAI | GTTAAC | 1 cut(s) | 456 |
| Kzo9I | GATC | 2 cut(s) | 253, 745 |
| LguI | GCTCTTC | 1 cut(s) | 819 |
| LmnI | GCTCC | 1 cut(s) | 433 |
| LpnPI | CCDG | 8 cut(s) | 20, 132, 210, 321, 324, 508, 573, 683 |
| Lsp1109I | GCAGC | 1 cut(s) | 816 |
| LweI | GCATC | 4 cut(s) | 262, 366, 403, 709 |
| MaeI | CTAG | 3 cut(s) | 380, 465, 915 |
| MaeII | ACGT | 1 cut(s) | 458 |
| MalI | GATC | 2 cut(s) | 255, 747 |
| MboI | GATC | 2 cut(s) | 253, 745 |
| MboII | GAAGA | 9 cut(s) | 37, 242, 278, 281, 422, 487, 833, 836, 860 |
| MfeI | CAATTG | 1 cut(s) | 443 |
| MluCI | AATT | 4 cut(s) | 191, 217, 288, 443 |
| MmeI | TCCRAC | 1 cut(s) | 429 |
| MnlI | CCTC | 7 cut(s) | 144, 193, 304, 528, 546, 934, 981 |
| MroXI | GAANNNNTTC | 1 cut(s) | 164 |
| MseI | TTAA | 3 cut(s) | 80, 455, 527 |
| MslI | CAYNNNNRTG | 4 cut(s) | 161, 390, 642, 923 |
| MspI | CCGG | 2 cut(s) | 119, 670 |
| MspR9I | CCNGG | 1 cut(s) | 671 |
| MunI | CAATTG | 1 cut(s) | 443 |
| NciI | CCSGG | 1 cut(s) | 671 |
| NcoI | CCATGG | 1 cut(s) | 348 |
| NdeI | CATATG | 2 cut(s) | 438, 924 |
| NdeII | GATC | 2 cut(s) | 253, 745 |
| NheI | GCTAGC | 1 cut(s) | 379 |
| NlaIII | CATG | 6 cut(s) | 160, 352, 433, 641, 836, 977 |
| OliI | CACNNNNGTG | 1 cut(s) | 390 |
| PagI | TCATGA | 1 cut(s) | 973 |
| PciSI | GCTCTTC | 1 cut(s) | 819 |
| PdmI | GAANNNNTTC | 1 cut(s) | 164 |
| PfeI | GAWTC | 2 cut(s) | 73, 468 |
| PkrI | GCNGC | 1 cut(s) | 831 |
| PsiI | TTATAA | 1 cut(s) | 788 |
| Psp1406I | AACGTT | 1 cut(s) | 458 |
| PspPI | GGNCC | 2 cut(s) | 116, 602 |
| RsaI | GTAC | 2 cut(s) | 140, 155 |
| RsaNI | GTAC | 2 cut(s) | 139, 154 |
| RseI | CAYNNNNRTG | 4 cut(s) | 161, 390, 642, 923 |
| SapI | GCTCTTC | 1 cut(s) | 819 |
| SaqAI | TTAA | 3 cut(s) | 80, 455, 527 |
| SatI | GCNGC | 1 cut(s) | 830 |
| Sau3AI | GATC | 2 cut(s) | 253, 745 |
| Sau96I | GGNCC | 2 cut(s) | 116, 602 |
| ScrFI | CCNGG | 1 cut(s) | 671 |
| SfaNI | GCATC | 4 cut(s) | 262, 366, 403, 709 |
| SfcI | CTRYAG | 1 cut(s) | 237 |
| SinI | GGWCC | 1 cut(s) | 116 |
| SmiMI | CAYNNNNRTG | 4 cut(s) | 161, 390, 642, 923 |
| Sse9I | AATT | 4 cut(s) | 191, 217, 288, 443 |
| SspMI | CTAG | 3 cut(s) | 380, 465, 915 |
| StyD4I | CCNGG | 1 cut(s) | 669 |
| StyI | CCWWGG | 3 cut(s) | 348, 741, 755 |
| TaaI | ACNGT | 5 cut(s) | 25, 85, 283, 324, 677 |
| TaiI | ACGT | 1 cut(s) | 461 |
| TaqI | TCGA | 2 cut(s) | 63, 187 |
| TasI | AATT | 4 cut(s) | 191, 217, 288, 443 |
| TfiI | GAWTC | 2 cut(s) | 73, 468 |
| Tru1I | TTAA | 3 cut(s) | 80, 455, 527 |
| Tru9I | TTAA | 3 cut(s) | 80, 455, 527 |
| TscAI | CASTG | 2 cut(s) | 286, 329 |
| TseI | GCWGC | 1 cut(s) | 829 |
| TspDTI | ATGAA | 8 cut(s) | 65, 77, 173, 418, 621, 627, 834, 975 |
| TspGWI | ACGGA | 1 cut(s) | 785 |
| TspRI | CASTG | 2 cut(s) | 286, 329 |
| VpaK11BI | GGWCC | 1 cut(s) | 116 |
| XagI | CCTNNNNNAGG | 1 cut(s) | 148 |
| XapI | RAATTY | 1 cut(s) | 288 |
| XmnI | GAANNNNTTC | 1 cut(s) | 164 |
| XspI | CTAG | 3 cut(s) | 380, 465, 915 |