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| Enzyme | Recognition Site | Cut Count | Positions (bp) |
|---|---|---|---|
| Acc65I | GGTACC | 1 cut(s) | 220 |
| AccB1I | GGYRCC | 2 cut(s) | 220, 403 |
| AfaI | GTAC | 3 cut(s) | 83, 94, 222 |
| AgsI | TTSAA | 6 cut(s) | 112, 125, 133, 139, 448, 461 |
| AjnI | CCWGG | 1 cut(s) | 406 |
| AluBI | AGCT | 2 cut(s) | 335, 342 |
| AluI | AGCT | 2 cut(s) | 335, 342 |
| ApeKI | GCWGC | 2 cut(s) | 257, 322 |
| Asp700I | GAANNNNTTC | 1 cut(s) | 282 |
| Asp718I | GGTACC | 1 cut(s) | 220 |
| AsuC2I | CCSGG | 1 cut(s) | 225 |
| AsuHPI | GGTGA | 1 cut(s) | 368 |
| BaeI | ACNNNNGTAYC | 2 cut(s) | 65, 98 |
| BanI | GGYRCC | 2 cut(s) | 220, 403 |
| BbvI | GCAGC | 2 cut(s) | 269, 334 |
| BccI | CCATC | 4 cut(s) | 59, 262, 360, 508 |
| BciT130I | CCWGG | 1 cut(s) | 408 |
| BcnI | CCSGG | 1 cut(s) | 225 |
| BfaI | CTAG | 2 cut(s) | 30, 182 |
| BisI | GCNGC | 2 cut(s) | 258, 323 |
| BlsI | GCNGC | 2 cut(s) | 259, 324 |
| Bme1390I | CCNGG | 2 cut(s) | 225, 408 |
| BmiI | GGNNCC | 2 cut(s) | 222, 405 |
| BmrFI | CCNGG | 2 cut(s) | 225, 408 |
| BmrI | ACTGGG | 2 cut(s) | 81, 383 |
| BmsI | GCATC | 1 cut(s) | 151 |
| BmuI | ACTGGG | 2 cut(s) | 81, 383 |
| BpuMI | CCSGG | 1 cut(s) | 225 |
| BsaJI | CCNNGG | 1 cut(s) | 407 |
| Bse1I | ACTGG | 2 cut(s) | 87, 378 |
| BseBI | CCWGG | 1 cut(s) | 408 |
| BseDI | CCNNGG | 1 cut(s) | 407 |
| BseGI | GGATG | 3 cut(s) | 22, 273, 459 |
| BseNI | ACTGG | 2 cut(s) | 87, 378 |
| BseRI | GAGGAG | 1 cut(s) | 35 |
| BseXI | GCAGC | 2 cut(s) | 269, 334 |
| BshNI | GGYRCC | 2 cut(s) | 220, 403 |
| BsiSI | CCGG | 1 cut(s) | 225 |
| BsmI | GAATGC | 2 cut(s) | 46, 325 |
| Bsp1407I | TGTACA | 1 cut(s) | 92 |
| Bsp143I | GATC | 1 cut(s) | 348 |
| BspHI | TCATGA | 1 cut(s) | 186 |
| BspLI | GGNNCC | 2 cut(s) | 222, 405 |
| BspT107I | GGYRCC | 2 cut(s) | 220, 403 |
| BsrGI | TGTACA | 1 cut(s) | 92 |
| BsrI | ACTGG | 2 cut(s) | 87, 378 |
| BssECI | CCNNGG | 1 cut(s) | 407 |
| BssMI | GATC | 1 cut(s) | 348 |
| Bst2UI | CCWGG | 1 cut(s) | 408 |
| Bst4CI | ACNGT | 1 cut(s) | 116 |
| BstAUI | TGTACA | 1 cut(s) | 92 |
| BstC8I | GCNNGC | 1 cut(s) | 474 |
| BstDEI | CTNAG | 1 cut(s) | 50 |
| BstF5I | GGATG | 3 cut(s) | 22, 273, 459 |
| BstKTI | GATC | 1 cut(s) | 351 |
| BstMBI | GATC | 1 cut(s) | 348 |
| BstMWI | GCNNNNNNNGC | 2 cut(s) | 248, 257 |
| BstNI | CCWGG | 1 cut(s) | 408 |
| BstNSI | RCATGY | 4 cut(s) | 181, 199, 310, 496 |
| BstSCI | CCNGG | 2 cut(s) | 223, 406 |
| BstV1I | GCAGC | 2 cut(s) | 269, 334 |
| BtsCI | GGATG | 3 cut(s) | 22, 273, 459 |
| Cac8I | GCNNGC | 1 cut(s) | 474 |
| CciI | TCATGA | 1 cut(s) | 186 |
| Csp6I | GTAC | 3 cut(s) | 82, 93, 221 |
| CviAII | CATG | 7 cut(s) | 178, 187, 196, 287, 307, 493, 519 |
| CviJI | RGCY | 4 cut(s) | 242, 335, 342, 472 |
| CviKI_1 | RGCY | 4 cut(s) | 242, 335, 342, 472 |
| CviQI | GTAC | 3 cut(s) | 82, 93, 221 |
| DdeI | CTNAG | 1 cut(s) | 50 |
| DpnI | GATC | 1 cut(s) | 350 |
| DpnII | GATC | 1 cut(s) | 348 |
| Eco32I | GATATC | 1 cut(s) | 27 |
| EcoRII | CCWGG | 1 cut(s) | 406 |
| EcoRV | GATATC | 1 cut(s) | 27 |
| EcoT22I | ATGCAT | 1 cut(s) | 46 |
| FaeI | CATG | 7 cut(s) | 181, 190, 199, 290, 310, 496, 522 |
| FatI | CATG | 7 cut(s) | 177, 186, 195, 286, 306, 492, 518 |
| Fnu4HI | GCNGC | 2 cut(s) | 258, 323 |
| FokI | GGATG | 3 cut(s) | 29, 280, 466 |
| Fsp4HI | GCNGC | 2 cut(s) | 258, 323 |
| FspBI | CTAG | 2 cut(s) | 30, 182 |
| GluI | GCNGC | 2 cut(s) | 258, 323 |
| HapII | CCGG | 1 cut(s) | 225 |
| Hin1II | CATG | 7 cut(s) | 181, 190, 199, 290, 310, 496, 522 |
| HinfI | GANTC | 4 cut(s) | 35, 283, 359, 444 |
| HpaII | CCGG | 1 cut(s) | 225 |
| HphI | GGTGA | 1 cut(s) | 368 |
| Hpy188III | TCNNGA | 3 cut(s) | 187, 206, 363 |
| HpyAV | CCTTC | 4 cut(s) | 203, 372, 406, 472 |
| HpyCH4III | ACNGT | 1 cut(s) | 116 |
| HpyCH4V | TGCA | 4 cut(s) | 44, 257, 306, 492 |
| HpyF10VI | GCNNNNNNNGC | 2 cut(s) | 248, 257 |
| HpyF3I | CTNAG | 1 cut(s) | 50 |
| Hsp92II | CATG | 7 cut(s) | 181, 190, 199, 290, 310, 496, 522 |
| KpnI | GGTACC | 1 cut(s) | 224 |
| Kzo9I | GATC | 1 cut(s) | 348 |
| LpnPI | CCDG | 7 cut(s) | 100, 134, 238, 359, 393, 420, 486 |
| Lsp1109I | GCAGC | 2 cut(s) | 269, 334 |
| LweI | GCATC | 1 cut(s) | 151 |
| MaeI | CTAG | 2 cut(s) | 30, 182 |
| MaeIII | GTNAC | 1 cut(s) | 32 |
| MalI | GATC | 1 cut(s) | 350 |
| MboI | GATC | 1 cut(s) | 348 |
| MboII | GAAGA | 2 cut(s) | 74, 406 |
| MlyI | GAGTC | 1 cut(s) | 29 |
| MmeI | TCCRAC | 1 cut(s) | 198 |
| MnlI | CCTC | 5 cut(s) | 7, 13, 211, 232, 311 |
| Mph1103I | ATGCAT | 1 cut(s) | 46 |
| MroXI | GAANNNNTTC | 1 cut(s) | 282 |
| MspI | CCGG | 1 cut(s) | 225 |
| MspR9I | CCNGG | 2 cut(s) | 225, 408 |
| Mva1269I | GAATGC | 2 cut(s) | 46, 325 |
| MvaI | CCWGG | 1 cut(s) | 408 |
| MwoI | GCNNNNNNNGC | 2 cut(s) | 248, 257 |
| NciI | CCSGG | 1 cut(s) | 225 |
| NdeII | GATC | 1 cut(s) | 348 |
| NlaIII | CATG | 7 cut(s) | 181, 190, 199, 290, 310, 496, 522 |
| NlaIV | GGNNCC | 2 cut(s) | 222, 405 |
| NmuCI | GTSAC | 1 cut(s) | 32 |
| NsiI | ATGCAT | 1 cut(s) | 46 |
| NspI | RCATGY | 4 cut(s) | 181, 199, 310, 496 |
| PagI | TCATGA | 1 cut(s) | 186 |
| PctI | GAATGC | 2 cut(s) | 46, 325 |
| PdmI | GAANNNNTTC | 1 cut(s) | 282 |
| PfeI | GAWTC | 3 cut(s) | 283, 359, 444 |
| PkrI | GCNGC | 2 cut(s) | 259, 324 |
| PleI | GAGTC | 1 cut(s) | 29 |
| PpsI | GAGTC | 1 cut(s) | 29 |
| Psp6I | CCWGG | 1 cut(s) | 406 |
| PspGI | CCWGG | 1 cut(s) | 406 |
| PspN4I | GGNNCC | 2 cut(s) | 222, 405 |
| RsaI | GTAC | 3 cut(s) | 83, 94, 222 |
| RsaNI | GTAC | 3 cut(s) | 82, 93, 221 |
| SatI | GCNGC | 2 cut(s) | 258, 323 |
| Sau3AI | GATC | 1 cut(s) | 348 |
| SchI | GAGTC | 1 cut(s) | 29 |
| ScrFI | CCNGG | 2 cut(s) | 225, 408 |
| SetI | ASST | 6 cut(s) | 56, 79, 222, 337, 344, 417 |
| SfaNI | GCATC | 1 cut(s) | 151 |
| SspMI | CTAG | 2 cut(s) | 30, 182 |
| StyD4I | CCNGG | 2 cut(s) | 223, 406 |
| TaaI | ACNGT | 1 cut(s) | 116 |
| TaqI | TCGA | 1 cut(s) | 38 |
| TatI | WGTACW | 1 cut(s) | 92 |
| TfiI | GAWTC | 3 cut(s) | 283, 359, 444 |
| TseFI | GTSAC | 1 cut(s) | 32 |
| TseI | GCWGC | 2 cut(s) | 257, 322 |
| Tsp45I | GTSAC | 1 cut(s) | 32 |
| TspDTI | ATGAA | 2 cut(s) | 275, 291 |
| XceI | RCATGY | 4 cut(s) | 181, 199, 310, 496 |
| XmnI | GAANNNNTTC | 1 cut(s) | 282 |
| XspI | CTAG | 2 cut(s) | 30, 182 |
| Zsp2I | ATGCAT | 1 cut(s) | 46 |