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| Enzyme | Recognition Site | Cut Count | Positions (bp) |
|---|---|---|---|
| AanI | TTATAA | 1 cut(s) | 522 |
| Acc65I | GGTACC | 1 cut(s) | 943 |
| AccB1I | GGYRCC | 1 cut(s) | 943 |
| AccB7I | CCANNNNNTGG | 1 cut(s) | 705 |
| AccBSI | CCGCTC | 1 cut(s) | 787 |
| AciI | CCGC | 1 cut(s) | 787 |
| AclWI | GGATC | 1 cut(s) | 174 |
| AcoI | YGGCCR | 1 cut(s) | 898 |
| AcvI | CACGTG | 1 cut(s) | 757 |
| AcyI | GRCGYC | 1 cut(s) | 819 |
| AfaI | GTAC | 1 cut(s) | 945 |
| AfiI | CCNNNNNNNGG | 6 cut(s) | 290, 449, 523, 524, 590, 705 |
| AflII | CTTAAG | 1 cut(s) | 68 |
| AgsI | TTSAA | 5 cut(s) | 181, 325, 476, 580, 809 |
| AluBI | AGCT | 2 cut(s) | 398, 590 |
| AluI | AGCT | 2 cut(s) | 398, 590 |
| Alw26I | GTCTC | 2 cut(s) | 452, 597 |
| AlwI | GGATC | 1 cut(s) | 174 |
| AoxI | GGCC | 2 cut(s) | 869, 898 |
| ApeKI | GCWGC | 1 cut(s) | 236 |
| Asp718I | GGTACC | 1 cut(s) | 943 |
| AspS9I | GGNCC | 1 cut(s) | 719 |
| AvaII | GGWCC | 1 cut(s) | 719 |
| BanI | GGYRCC | 1 cut(s) | 943 |
| BbrPI | CACGTG | 1 cut(s) | 757 |
| BbsI | GAAGAC | 2 cut(s) | 367, 521 |
| BbvI | GCAGC | 1 cut(s) | 223 |
| BceAI | ACGGC | 1 cut(s) | 913 |
| BciVI | GTATCC | 1 cut(s) | 558 |
| BcoDI | GTCTC | 2 cut(s) | 452, 597 |
| BfaI | CTAG | 3 cut(s) | 90, 204, 621 |
| BfmI | CTRYAG | 2 cut(s) | 417, 585 |
| BfrI | CTTAAG | 1 cut(s) | 68 |
| BfuI | GTATCC | 1 cut(s) | 558 |
| BisI | GCNGC | 1 cut(s) | 237 |
| BlsI | GCNGC | 1 cut(s) | 238 |
| Bme18I | GGWCC | 1 cut(s) | 719 |
| BmgT120I | GGNCC | 1 cut(s) | 719 |
| BmiI | GGNNCC | 3 cut(s) | 95, 735, 945 |
| BmsI | GCATC | 2 cut(s) | 471, 826 |
| BpiI | GAAGAC | 2 cut(s) | 367, 521 |
| BsaAI | YACGTR | 1 cut(s) | 757 |
| BsaHI | GRCGYC | 1 cut(s) | 819 |
| BsaJI | CCNNGG | 1 cut(s) | 745 |
| Bsc4I | CCNNNNNNNGG | 6 cut(s) | 290, 449, 523, 524, 590, 705 |
| Bse1I | ACTGG | 1 cut(s) | 61 |
| Bse3DI | GCAATG | 1 cut(s) | 846 |
| BseDI | CCNNGG | 1 cut(s) | 745 |
| BseGI | GGATG | 3 cut(s) | 21, 379, 486 |
| BseLI | CCNNNNNNNGG | 6 cut(s) | 290, 449, 523, 524, 590, 705 |
| BseMI | GCAATG | 1 cut(s) | 846 |
| BseMII | CTCAG | 1 cut(s) | 341 |
| BseNI | ACTGG | 1 cut(s) | 61 |
| BseRI | GAGGAG | 1 cut(s) | 470 |
| BseX3I | CGGCCG | 1 cut(s) | 898 |
| BseXI | GCAGC | 1 cut(s) | 223 |
| Bsh1285I | CGRYCG | 1 cut(s) | 901 |
| BshFI | GGCC | 2 cut(s) | 871, 900 |
| BshNI | GGYRCC | 1 cut(s) | 943 |
| BsiEI | CGRYCG | 1 cut(s) | 901 |
| BslFI | GGGAC | 1 cut(s) | 803 |
| BslI | CCNNNNNNNGG | 6 cut(s) | 290, 449, 523, 524, 590, 705 |
| BsmAI | GTCTC | 2 cut(s) | 452, 597 |
| BsmFI | GGGAC | 1 cut(s) | 803 |
| BsnI | GGCC | 2 cut(s) | 871, 900 |
| Bsp143I | GATC | 4 cut(s) | 32, 166, 651, 800 |
| BspACI | CCGC | 1 cut(s) | 787 |
| BspANI | GGCC | 2 cut(s) | 871, 900 |
| BspCNI | CTCAG | 1 cut(s) | 342 |
| BspLI | GGNNCC | 3 cut(s) | 95, 735, 945 |
| BspPI | GGATC | 1 cut(s) | 174 |
| BspT107I | GGYRCC | 1 cut(s) | 943 |
| BspTI | CTTAAG | 1 cut(s) | 68 |
| BsrBI | CCGCTC | 1 cut(s) | 787 |
| BsrDI | GCAATG | 1 cut(s) | 846 |
| BsrI | ACTGG | 1 cut(s) | 61 |
| BssECI | CCNNGG | 1 cut(s) | 745 |
| BssMI | GATC | 4 cut(s) | 32, 166, 651, 800 |
| BssNI | GRCGYC | 1 cut(s) | 819 |
| Bst4CI | ACNGT | 6 cut(s) | 156, 271, 418, 794, 815, 880 |
| BstACI | GRCGYC | 1 cut(s) | 819 |
| BstAFI | CTTAAG | 1 cut(s) | 68 |
| BstBAI | YACGTR | 1 cut(s) | 757 |
| BstC8I | GCNNGC | 2 cut(s) | 396, 711 |
| BstDEI | CTNAG | 2 cut(s) | 49, 350 |
| BstDSI | CCRYGG | 1 cut(s) | 745 |
| BstEII | GGTNACC | 1 cut(s) | 749 |
| BstENI | CCTNNNNNAGG | 1 cut(s) | 288 |
| BstF5I | GGATG | 3 cut(s) | 21, 379, 486 |
| BstKTI | GATC | 4 cut(s) | 35, 169, 654, 803 |
| BstMAI | GTCTC | 2 cut(s) | 452, 597 |
| BstMBI | GATC | 4 cut(s) | 32, 166, 651, 800 |
| BstMCI | CGRYCG | 1 cut(s) | 901 |
| BstMWI | GCNNNNNNNGC | 1 cut(s) | 126 |
| BstPI | GGTNACC | 1 cut(s) | 749 |
| BstSFI | CTRYAG | 2 cut(s) | 417, 585 |
| BstV1I | GCAGC | 1 cut(s) | 223 |
| BstV2I | GAAGAC | 2 cut(s) | 367, 521 |
| BstXI | CCANNNNNNTGG | 1 cut(s) | 761 |
| BstZI | CGGCCG | 1 cut(s) | 898 |
| BsuI | GTATCC | 1 cut(s) | 558 |
| BsuRI | GGCC | 2 cut(s) | 871, 900 |
| BtgI | CCRYGG | 1 cut(s) | 745 |
| BtsCI | GGATG | 3 cut(s) | 21, 379, 486 |
| BtsIMutI | CAGTG | 2 cut(s) | 414, 820 |
| Cac8I | GCNNGC | 2 cut(s) | 396, 711 |
| Cfr13I | GGNCC | 1 cut(s) | 719 |
| CseI | GACGC | 2 cut(s) | 440, 808 |
| Csp6I | GTAC | 1 cut(s) | 944 |
| CspCI | CAANNNNNGTGG | 1 cut(s) | 936 |
| CviAII | CATG | 3 cut(s) | 12, 170, 886 |
| CviJI | RGCY | 8 cut(s) | 398, 583, 590, 620, 709, 713, 871, 900 |
| CviKI_1 | RGCY | 8 cut(s) | 398, 583, 590, 620, 709, 713, 871, 900 |
| CviQI | GTAC | 1 cut(s) | 944 |
| DdeI | CTNAG | 2 cut(s) | 49, 350 |
| DpnI | GATC | 4 cut(s) | 34, 168, 653, 802 |
| DpnII | GATC | 4 cut(s) | 32, 166, 651, 800 |
| EaeI | YGGCCR | 1 cut(s) | 898 |
| EagI | CGGCCG | 1 cut(s) | 898 |
| EclXI | CGGCCG | 1 cut(s) | 898 |
| Eco147I | AGGCCT | 1 cut(s) | 871 |
| Eco47I | GGWCC | 1 cut(s) | 719 |
| Eco52I | CGGCCG | 1 cut(s) | 898 |
| Eco72I | CACGTG | 1 cut(s) | 757 |
| Eco91I | GGTNACC | 1 cut(s) | 749 |
| EcoNI | CCTNNNNNAGG | 1 cut(s) | 288 |
| EcoO65I | GGTNACC | 1 cut(s) | 749 |
| FaeI | CATG | 3 cut(s) | 15, 173, 889 |
| FaqI | GGGAC | 1 cut(s) | 803 |
| FatI | CATG | 3 cut(s) | 11, 169, 885 |
| FauI | CCCGC | 1 cut(s) | 780 |
| Fnu4HI | GCNGC | 1 cut(s) | 237 |
| FokI | GGATG | 3 cut(s) | 28, 366, 493 |
| Fsp4HI | GCNGC | 1 cut(s) | 237 |
| FspBI | CTAG | 3 cut(s) | 90, 204, 621 |
| GluI | GCNGC | 1 cut(s) | 237 |
| HaeIII | GGCC | 2 cut(s) | 871, 900 |
| HgaI | GACGC | 2 cut(s) | 440, 808 |
| Hin1I | GRCGYC | 1 cut(s) | 819 |
| Hin1II | CATG | 3 cut(s) | 15, 173, 889 |
| HindIII | AAGCTT | 1 cut(s) | 396 |
| HinfI | GANTC | 3 cut(s) | 280, 355, 903 |
| Hpy166II | GTNNAC | 3 cut(s) | 719, 883, 925 |
| Hpy188I | TCNGA | 2 cut(s) | 265, 351 |
| Hpy188III | TCNNGA | 3 cut(s) | 284, 533, 692 |
| Hpy8I | GTNNAC | 3 cut(s) | 719, 883, 925 |
| HpyAV | CCTTC | 1 cut(s) | 13 |
| HpyCH4III | ACNGT | 6 cut(s) | 156, 271, 418, 794, 815, 880 |
| HpyCH4IV | ACGT | 1 cut(s) | 756 |
| HpyCH4V | TGCA | 7 cut(s) | 77, 193, 467, 659, 839, 844, 857 |
| HpyF10VI | GCNNNNNNNGC | 1 cut(s) | 126 |
| HpyF3I | CTNAG | 2 cut(s) | 49, 350 |
| HpySE526I | ACGT | 1 cut(s) | 756 |
| Hsp92I | GRCGYC | 1 cut(s) | 819 |
| Hsp92II | CATG | 3 cut(s) | 15, 173, 889 |
| KpnI | GGTACC | 1 cut(s) | 947 |
| Kzo9I | GATC | 4 cut(s) | 32, 166, 651, 800 |
| LmnI | GCTCC | 2 cut(s) | 514, 784 |
| Lsp1109I | GCAGC | 1 cut(s) | 223 |
| LweI | GCATC | 2 cut(s) | 471, 826 |
| MaeI | CTAG | 3 cut(s) | 90, 204, 621 |
| MaeII | ACGT | 1 cut(s) | 756 |
| MaeIII | GTNAC | 2 cut(s) | 131, 749 |
| MalI | GATC | 4 cut(s) | 34, 168, 653, 802 |
| MbiI | CCGCTC | 1 cut(s) | 787 |
| MboI | GATC | 4 cut(s) | 32, 166, 651, 800 |
| MboII | GAAGA | 4 cut(s) | 314, 346, 372, 521 |
| MluCI | AATT | 5 cut(s) | 41, 338, 574, 666, 672 |
| MmeI | TCCRAC | 3 cut(s) | 188, 605, 931 |
| MnlI | CCTC | 6 cut(s) | 250, 287, 345, 448, 724, 913 |
| MseI | TTAA | 6 cut(s) | 57, 69, 122, 162, 446, 774 |
| MslI | CAYNNNNRTG | 1 cut(s) | 759 |
| MspA1I | CMGCKG | 1 cut(s) | 590 |
| MspCI | CTTAAG | 1 cut(s) | 68 |
| MwoI | GCNNNNNNNGC | 1 cut(s) | 126 |
| NdeII | GATC | 4 cut(s) | 32, 166, 651, 800 |
| NlaIII | CATG | 3 cut(s) | 15, 173, 889 |
| NlaIV | GGNNCC | 3 cut(s) | 95, 735, 945 |
| PceI | AGGCCT | 1 cut(s) | 871 |
| PfeI | GAWTC | 3 cut(s) | 280, 355, 903 |
| PflMI | CCANNNNNTGG | 1 cut(s) | 705 |
| PkrI | GCNGC | 1 cut(s) | 238 |
| PmaCI | CACGTG | 1 cut(s) | 757 |
| PmlI | CACGTG | 1 cut(s) | 757 |
| Ppu21I | YACGTR | 1 cut(s) | 757 |
| PsiI | TTATAA | 1 cut(s) | 522 |
| PspCI | CACGTG | 1 cut(s) | 757 |
| PspEI | GGTNACC | 1 cut(s) | 749 |
| PspN4I | GGNNCC | 3 cut(s) | 95, 735, 945 |
| PspPI | GGNCC | 1 cut(s) | 719 |
| PvuII | CAGCTG | 1 cut(s) | 590 |
| RsaI | GTAC | 1 cut(s) | 945 |
| RsaNI | GTAC | 1 cut(s) | 944 |
| RseI | CAYNNNNRTG | 1 cut(s) | 759 |
| SaqAI | TTAA | 6 cut(s) | 57, 69, 122, 162, 446, 774 |
| SatI | GCNGC | 1 cut(s) | 237 |
| Sau3AI | GATC | 4 cut(s) | 32, 166, 651, 800 |
| Sau96I | GGNCC | 1 cut(s) | 719 |
| SfaNI | GCATC | 2 cut(s) | 471, 826 |
| SfcI | CTRYAG | 2 cut(s) | 417, 585 |
| SinI | GGWCC | 1 cut(s) | 719 |
| SmiMI | CAYNNNNRTG | 1 cut(s) | 759 |
| SmlI | CTYRAG | 1 cut(s) | 68 |
| SmoI | CTYRAG | 1 cut(s) | 68 |
| Sse9I | AATT | 5 cut(s) | 41, 338, 574, 666, 672 |
| SseBI | AGGCCT | 1 cut(s) | 871 |
| SsiI | CCGC | 1 cut(s) | 787 |
| SspMI | CTAG | 3 cut(s) | 90, 204, 621 |
| StuI | AGGCCT | 1 cut(s) | 871 |
| TaaI | ACNGT | 6 cut(s) | 156, 271, 418, 794, 815, 880 |
| TaiI | ACGT | 1 cut(s) | 759 |
| TaqI | TCGA | 5 cut(s) | 45, 332, 358, 408, 834 |
| TasI | AATT | 5 cut(s) | 41, 338, 574, 666, 672 |
| TfiI | GAWTC | 3 cut(s) | 280, 355, 903 |
| Tru1I | TTAA | 6 cut(s) | 57, 69, 122, 162, 446, 774 |
| Tru9I | TTAA | 6 cut(s) | 57, 69, 122, 162, 446, 774 |
| TscAI | CASTG | 2 cut(s) | 421, 820 |
| TseI | GCWGC | 1 cut(s) | 236 |
| TspDTI | ATGAA | 5 cut(s) | 32, 148, 315, 678, 699 |
| TspGWI | ACGGA | 1 cut(s) | 734 |
| TspRI | CASTG | 2 cut(s) | 421, 820 |
| Van91I | CCANNNNNTGG | 1 cut(s) | 705 |
| Vha464I | CTTAAG | 1 cut(s) | 68 |
| VpaK11BI | GGWCC | 1 cut(s) | 719 |
| XagI | CCTNNNNNAGG | 1 cut(s) | 288 |
| XcmI | CCANNNNNNNNNTGG | 1 cut(s) | 706 |
| XspI | CTAG | 3 cut(s) | 90, 204, 621 |