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| Enzyme | Recognition Site | Cut Count | Positions (bp) |
|---|---|---|---|
| AasI | GACNNNNNNGTC | 1 cut(s) | 438 |
| Acc65I | GGTACC | 1 cut(s) | 188 |
| AccB1I | GGYRCC | 1 cut(s) | 188 |
| AccB7I | CCANNNNNTGG | 1 cut(s) | 101 |
| AcsI | RAATTY | 1 cut(s) | 14 |
| AfaI | GTAC | 2 cut(s) | 190, 737 |
| AfiI | CCNNNNNNNGG | 2 cut(s) | 101, 284 |
| AgsI | TTSAA | 9 cut(s) | 128, 199, 274, 367, 417, 553, 585, 593, 635 |
| AhlI | ACTAGT | 1 cut(s) | 266 |
| AjnI | CCWGG | 1 cut(s) | 283 |
| AluBI | AGCT | 4 cut(s) | 56, 227, 425, 605 |
| AluI | AGCT | 4 cut(s) | 56, 227, 425, 605 |
| Alw26I | GTCTC | 2 cut(s) | 127, 424 |
| Ama87I | CYCGRG | 1 cut(s) | 206 |
| AoxI | GGCC | 1 cut(s) | 297 |
| ApeKI | GCWGC | 3 cut(s) | 171, 227, 328 |
| ApoI | RAATTY | 1 cut(s) | 14 |
| Asp718I | GGTACC | 1 cut(s) | 188 |
| AspLEI | GCGC | 1 cut(s) | 387 |
| AspS9I | GGNCC | 2 cut(s) | 297, 713 |
| AsuC2I | CCSGG | 2 cut(s) | 207, 208 |
| AsuHPI | GGTGA | 2 cut(s) | 84, 583 |
| AvaI | CYCGRG | 1 cut(s) | 206 |
| AvaII | GGWCC | 1 cut(s) | 713 |
| BanI | GGYRCC | 1 cut(s) | 188 |
| BbsI | GAAGAC | 1 cut(s) | 218 |
| BbvI | GCAGC | 3 cut(s) | 158, 214, 315 |
| BccI | CCATC | 3 cut(s) | 215, 693, 723 |
| BciT130I | CCWGG | 1 cut(s) | 285 |
| BcnI | CCSGG | 2 cut(s) | 207, 208 |
| BcoDI | GTCTC | 2 cut(s) | 127, 424 |
| BcuI | ACTAGT | 1 cut(s) | 266 |
| BfaI | CTAG | 2 cut(s) | 267, 332 |
| BfmI | CTRYAG | 1 cut(s) | 51 |
| BisI | GCNGC | 3 cut(s) | 172, 228, 329 |
| BlsI | GCNGC | 3 cut(s) | 173, 229, 330 |
| Bme1390I | CCNGG | 3 cut(s) | 207, 208, 285 |
| Bme18I | GGWCC | 1 cut(s) | 713 |
| BmeT110I | CYCGRG | 1 cut(s) | 206 |
| BmgT120I | GGNCC | 2 cut(s) | 297, 713 |
| BmiI | GGNNCC | 2 cut(s) | 190, 378 |
| BmrFI | CCNGG | 3 cut(s) | 207, 208, 285 |
| BmsI | GCATC | 4 cut(s) | 141, 166, 267, 588 |
| BpiI | GAAGAC | 1 cut(s) | 218 |
| BpuMI | CCSGG | 2 cut(s) | 207, 208 |
| BsaJI | CCNNGG | 2 cut(s) | 206, 216 |
| BsaWI | WCCGGW | 1 cut(s) | 715 |
| Bsc4I | CCNNNNNNNGG | 2 cut(s) | 101, 284 |
| Bse118I | RCCGGY | 1 cut(s) | 514 |
| BseBI | CCWGG | 1 cut(s) | 285 |
| BseDI | CCNNGG | 2 cut(s) | 206, 216 |
| BseGI | GGATG | 3 cut(s) | 31, 226, 738 |
| BseLI | CCNNNNNNNGG | 2 cut(s) | 101, 284 |
| BseXI | GCAGC | 3 cut(s) | 158, 214, 315 |
| BshFI | GGCC | 1 cut(s) | 299 |
| BshNI | GGYRCC | 1 cut(s) | 188 |
| BsiHKCI | CYCGRG | 1 cut(s) | 206 |
| BsiSI | CCGG | 3 cut(s) | 207, 515, 716 |
| BslI | CCNNNNNNNGG | 2 cut(s) | 101, 284 |
| BsmAI | GTCTC | 2 cut(s) | 127, 424 |
| BsnI | GGCC | 1 cut(s) | 299 |
| BsoBI | CYCGRG | 1 cut(s) | 206 |
| Bsp143I | GATC | 2 cut(s) | 497, 607 |
| BspANI | GGCC | 1 cut(s) | 299 |
| BspLI | GGNNCC | 2 cut(s) | 190, 378 |
| BspQI | GCTCTTC | 1 cut(s) | 361 |
| BspT107I | GGYRCC | 1 cut(s) | 188 |
| BsrFI | RCCGGY | 1 cut(s) | 514 |
| BssAI | RCCGGY | 1 cut(s) | 514 |
| BssECI | CCNNGG | 2 cut(s) | 206, 216 |
| BssMI | GATC | 2 cut(s) | 497, 607 |
| BssT1I | CCWWGG | 1 cut(s) | 216 |
| Bst2UI | CCWGG | 1 cut(s) | 285 |
| Bst4CI | ACNGT | 3 cut(s) | 376, 622, 682 |
| Bst6I | CTCTTC | 1 cut(s) | 361 |
| BstC8I | GCNNGC | 3 cut(s) | 48, 603, 629 |
| BstF5I | GGATG | 3 cut(s) | 31, 226, 738 |
| BstHHI | GCGC | 1 cut(s) | 387 |
| BstKTI | GATC | 2 cut(s) | 500, 610 |
| BstMAI | GTCTC | 2 cut(s) | 127, 424 |
| BstMBI | GATC | 2 cut(s) | 497, 607 |
| BstNI | CCWGG | 1 cut(s) | 285 |
| BstSCI | CCNGG | 3 cut(s) | 205, 206, 283 |
| BstSFI | CTRYAG | 1 cut(s) | 51 |
| BstV1I | GCAGC | 3 cut(s) | 158, 214, 315 |
| BstV2I | GAAGAC | 1 cut(s) | 218 |
| BsuRI | GGCC | 1 cut(s) | 299 |
| BtgZI | GCGATG | 1 cut(s) | 189 |
| BtsCI | GGATG | 3 cut(s) | 31, 226, 738 |
| Cac8I | GCNNGC | 3 cut(s) | 48, 603, 629 |
| CfoI | GCGC | 1 cut(s) | 387 |
| Cfr10I | RCCGGY | 1 cut(s) | 514 |
| Cfr13I | GGNCC | 2 cut(s) | 297, 713 |
| Cfr9I | CCCGGG | 1 cut(s) | 206 |
| Csp6I | GTAC | 2 cut(s) | 189, 736 |
| CviAII | CATG | 4 cut(s) | 244, 370, 452, 485 |
| CviJI | RGCY | 8 cut(s) | 50, 56, 227, 277, 299, 425, 514, 605 |
| CviKI_1 | RGCY | 8 cut(s) | 50, 56, 227, 277, 299, 425, 514, 605 |
| CviQI | GTAC | 2 cut(s) | 189, 736 |
| DpnI | GATC | 2 cut(s) | 499, 609 |
| DpnII | GATC | 2 cut(s) | 497, 607 |
| DrdI | GACNNNNNNGTC | 1 cut(s) | 438 |
| DseDI | GACNNNNNNGTC | 1 cut(s) | 438 |
| Eam1104I | CTCTTC | 1 cut(s) | 361 |
| EarI | CTCTTC | 1 cut(s) | 361 |
| Eco130I | CCWWGG | 1 cut(s) | 216 |
| Eco47I | GGWCC | 1 cut(s) | 713 |
| Eco88I | CYCGRG | 1 cut(s) | 206 |
| EcoRII | CCWGG | 1 cut(s) | 283 |
| EcoT14I | CCWWGG | 1 cut(s) | 216 |
| ErhI | CCWWGG | 1 cut(s) | 216 |
| FaeI | CATG | 4 cut(s) | 247, 373, 455, 488 |
| FalI | AAGNNNNNCTT | 2 cut(s) | 594, 626 |
| FatI | CATG | 4 cut(s) | 243, 369, 451, 484 |
| Fnu4HI | GCNGC | 3 cut(s) | 172, 228, 329 |
| FokI | GGATG | 2 cut(s) | 18, 233 |
| Fsp4HI | GCNGC | 3 cut(s) | 172, 228, 329 |
| FspBI | CTAG | 2 cut(s) | 267, 332 |
| GlaI | GCGC | 1 cut(s) | 386 |
| GluI | GCNGC | 3 cut(s) | 172, 228, 329 |
| HaeIII | GGCC | 1 cut(s) | 299 |
| HapII | CCGG | 3 cut(s) | 207, 515, 716 |
| HhaI | GCGC | 1 cut(s) | 387 |
| Hin1II | CATG | 4 cut(s) | 247, 373, 455, 488 |
| Hin6I | GCGC | 1 cut(s) | 385 |
| HinP1I | GCGC | 1 cut(s) | 385 |
| HindIII | AAGCTT | 1 cut(s) | 423 |
| HinfI | GANTC | 4 cut(s) | 406, 432, 475, 670 |
| HpaII | CCGG | 3 cut(s) | 207, 515, 716 |
| HphI | GGTGA | 2 cut(s) | 84, 583 |
| Hpy188I | TCNGA | 2 cut(s) | 263, 291 |
| Hpy188III | TCNNGA | 1 cut(s) | 143 |
| HpyAV | CCTTC | 2 cut(s) | 36, 660 |
| HpyCH4III | ACNGT | 3 cut(s) | 376, 622, 682 |
| HpyCH4V | TGCA | 3 cut(s) | 154, 472, 601 |
| Hsp92II | CATG | 4 cut(s) | 247, 373, 455, 488 |
| HspAI | GCGC | 1 cut(s) | 385 |
| KpnI | GGTACC | 1 cut(s) | 192 |
| Kzo9I | GATC | 2 cut(s) | 497, 607 |
| LguI | GCTCTTC | 1 cut(s) | 361 |
| LmnI | GCTCC | 1 cut(s) | 224 |
| LpnPI | CCDG | 9 cut(s) | 32, 220, 270, 297, 393, 395, 448, 528, 729 |
| Lsp1109I | GCAGC | 3 cut(s) | 158, 214, 315 |
| LweI | GCATC | 4 cut(s) | 141, 166, 267, 588 |
| MaeI | CTAG | 2 cut(s) | 267, 332 |
| MalI | GATC | 2 cut(s) | 499, 609 |
| MboI | GATC | 2 cut(s) | 497, 607 |
| MboII | GAAGA | 8 cut(s) | 89, 175, 223, 348, 470, 541, 634, 716 |
| MluCI | AATT | 3 cut(s) | 14, 166, 558 |
| MlyI | GAGTC | 1 cut(s) | 426 |
| MmeI | TCCRAC | 1 cut(s) | 299 |
| MnlI | CCTC | 1 cut(s) | 67 |
| MseI | TTAA | 4 cut(s) | 98, 159, 444, 677 |
| MspI | CCGG | 3 cut(s) | 207, 515, 716 |
| MspR9I | CCNGG | 3 cut(s) | 207, 208, 285 |
| MvaI | CCWGG | 1 cut(s) | 285 |
| NciI | CCSGG | 2 cut(s) | 207, 208 |
| NdeII | GATC | 2 cut(s) | 497, 607 |
| NlaIII | CATG | 4 cut(s) | 247, 373, 455, 488 |
| NlaIV | GGNNCC | 2 cut(s) | 190, 378 |
| PciSI | GCTCTTC | 1 cut(s) | 361 |
| PfeI | GAWTC | 3 cut(s) | 406, 475, 670 |
| PflMI | CCANNNNNTGG | 1 cut(s) | 101 |
| PkrI | GCNGC | 3 cut(s) | 173, 229, 330 |
| PleI | GAGTC | 1 cut(s) | 426 |
| PpsI | GAGTC | 1 cut(s) | 426 |
| Psp6I | CCWGG | 1 cut(s) | 283 |
| PspGI | CCWGG | 1 cut(s) | 283 |
| PspN4I | GGNNCC | 2 cut(s) | 190, 378 |
| PspPI | GGNCC | 2 cut(s) | 297, 713 |
| RsaI | GTAC | 2 cut(s) | 190, 737 |
| RsaNI | GTAC | 2 cut(s) | 189, 736 |
| SapI | GCTCTTC | 1 cut(s) | 361 |
| SaqAI | TTAA | 4 cut(s) | 98, 159, 444, 677 |
| SatI | GCNGC | 3 cut(s) | 172, 228, 329 |
| Sau3AI | GATC | 2 cut(s) | 497, 607 |
| Sau96I | GGNCC | 2 cut(s) | 297, 713 |
| SchI | GAGTC | 1 cut(s) | 426 |
| ScrFI | CCNGG | 3 cut(s) | 207, 208, 285 |
| SetI | ASST | 8 cut(s) | 58, 229, 427, 442, 524, 573, 607, 652 |
| SfaNI | GCATC | 4 cut(s) | 141, 166, 267, 588 |
| SfcI | CTRYAG | 1 cut(s) | 51 |
| SinI | GGWCC | 1 cut(s) | 713 |
| SmaI | CCCGGG | 1 cut(s) | 208 |
| SpeI | ACTAGT | 1 cut(s) | 266 |
| Sse9I | AATT | 3 cut(s) | 14, 166, 558 |
| SspI | AATATT | 1 cut(s) | 348 |
| SspMI | CTAG | 2 cut(s) | 267, 332 |
| StyD4I | CCNGG | 3 cut(s) | 205, 206, 283 |
| StyI | CCWWGG | 1 cut(s) | 216 |
| TaaI | ACNGT | 3 cut(s) | 376, 622, 682 |
| TaqI | TCGA | 4 cut(s) | 40, 144, 660, 727 |
| TasI | AATT | 3 cut(s) | 14, 166, 558 |
| TfiI | GAWTC | 3 cut(s) | 406, 475, 670 |
| Tru1I | TTAA | 4 cut(s) | 98, 159, 444, 677 |
| Tru9I | TTAA | 4 cut(s) | 98, 159, 444, 677 |
| TseI | GCWGC | 3 cut(s) | 171, 227, 328 |
| TspDTI | ATGAA | 2 cut(s) | 351, 662 |
| TspMI | CCCGGG | 1 cut(s) | 206 |
| Van91I | CCANNNNNTGG | 1 cut(s) | 101 |
| VpaK11BI | GGWCC | 1 cut(s) | 713 |
| XapI | RAATTY | 1 cut(s) | 14 |
| XcmI | CCANNNNNNNNNTGG | 1 cut(s) | 307 |
| XmaI | CCCGGG | 1 cut(s) | 206 |
| XspI | CTAG | 2 cut(s) | 267, 332 |