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| Enzyme | Recognition Site | Cut Count | Positions (bp) |
|---|---|---|---|
| AccI | GTMKAC | 1 cut(s) | 639 |
| AciI | CCGC | 2 cut(s) | 20, 376 |
| AcoI | YGGCCR | 1 cut(s) | 116 |
| AcvI | CACGTG | 1 cut(s) | 84 |
| AfiI | CCNNNNNNNGG | 1 cut(s) | 689 |
| AgsI | TTSAA | 2 cut(s) | 43, 174 |
| AjnI | CCWGG | 1 cut(s) | 483 |
| AluBI | AGCT | 4 cut(s) | 290, 334, 428, 463 |
| AluI | AGCT | 4 cut(s) | 290, 334, 428, 463 |
| Alw21I | GWGCWC | 1 cut(s) | 208 |
| AoxI | GGCC | 4 cut(s) | 22, 101, 116, 295 |
| ApeKI | GCWGC | 1 cut(s) | 17 |
| AspS9I | GGNCC | 3 cut(s) | 22, 27, 296 |
| AsuNHI | GCTAGC | 1 cut(s) | 286 |
| AvaII | GGWCC | 1 cut(s) | 27 |
| BalI | TGGCCA | 1 cut(s) | 118 |
| BbrPI | CACGTG | 1 cut(s) | 84 |
| BbsI | GAAGAC | 1 cut(s) | 535 |
| Bbv12I | GWGCWC | 1 cut(s) | 208 |
| BbvI | GCAGC | 1 cut(s) | 4 |
| BccI | CCATC | 3 cut(s) | 188, 317, 667 |
| BciT130I | CCWGG | 1 cut(s) | 485 |
| BclI | TGATCA | 1 cut(s) | 652 |
| BfaI | CTAG | 4 cut(s) | 11, 287, 300, 587 |
| BglI | GCCNNNNNGGC | 1 cut(s) | 109 |
| BisI | GCNGC | 1 cut(s) | 18 |
| BlsI | GCNGC | 1 cut(s) | 19 |
| Bme1390I | CCNGG | 1 cut(s) | 485 |
| Bme18I | GGWCC | 1 cut(s) | 27 |
| BmgT120I | GGNCC | 3 cut(s) | 22, 27, 296 |
| BmiI | GGNNCC | 1 cut(s) | 89 |
| BmrFI | CCNGG | 1 cut(s) | 485 |
| BmsI | GCATC | 1 cut(s) | 75 |
| BmtI | GCTAGC | 1 cut(s) | 290 |
| BpiI | GAAGAC | 1 cut(s) | 535 |
| BpuEI | CTTGAG | 2 cut(s) | 276, 513 |
| BsaAI | YACGTR | 1 cut(s) | 84 |
| BsaBI | GATNNNNATC | 1 cut(s) | 327 |
| BsaJI | CCNNGG | 1 cut(s) | 484 |
| Bsc4I | CCNNNNNNNGG | 1 cut(s) | 689 |
| Bse1I | ACTGG | 2 cut(s) | 30, 567 |
| Bse8I | GATNNNNATC | 1 cut(s) | 327 |
| BseBI | CCWGG | 1 cut(s) | 485 |
| BseDI | CCNNGG | 1 cut(s) | 484 |
| BseGI | GGATG | 1 cut(s) | 571 |
| BseJI | GATNNNNATC | 1 cut(s) | 327 |
| BseLI | CCNNNNNNNGG | 1 cut(s) | 689 |
| BseMII | CTCAG | 1 cut(s) | 47 |
| BseNI | ACTGG | 2 cut(s) | 30, 567 |
| BseXI | GCAGC | 1 cut(s) | 4 |
| BshFI | GGCC | 4 cut(s) | 24, 103, 118, 297 |
| BsiHKAI | GWGCWC | 1 cut(s) | 208 |
| BsiSI | CCGG | 1 cut(s) | 25 |
| BslI | CCNNNNNNNGG | 1 cut(s) | 689 |
| BsnI | GGCC | 4 cut(s) | 24, 103, 118, 297 |
| Bsp1286I | GDGCHC | 1 cut(s) | 208 |
| Bsp143I | GATC | 2 cut(s) | 652, 766 |
| BspACI | CCGC | 2 cut(s) | 20, 376 |
| BspANI | GGCC | 4 cut(s) | 24, 103, 118, 297 |
| BspCNI | CTCAG | 1 cut(s) | 48 |
| BspLI | GGNNCC | 1 cut(s) | 89 |
| BspOI | GCTAGC | 1 cut(s) | 290 |
| BspQI | GCTCTTC | 1 cut(s) | 213 |
| BsrI | ACTGG | 2 cut(s) | 30, 567 |
| BssECI | CCNNGG | 1 cut(s) | 484 |
| BssMI | GATC | 2 cut(s) | 652, 766 |
| Bst2UI | CCWGG | 1 cut(s) | 485 |
| Bst4CI | ACNGT | 2 cut(s) | 132, 310 |
| Bst6I | CTCTTC | 2 cut(s) | 213, 783 |
| BstBAI | YACGTR | 1 cut(s) | 84 |
| BstC8I | GCNNGC | 4 cut(s) | 22, 53, 288, 378 |
| BstDEI | CTNAG | 1 cut(s) | 56 |
| BstF5I | GGATG | 1 cut(s) | 571 |
| BstKTI | GATC | 2 cut(s) | 655, 769 |
| BstMBI | GATC | 2 cut(s) | 652, 766 |
| BstMWI | GCNNNNNNNGC | 2 cut(s) | 109, 524 |
| BstNI | CCWGG | 1 cut(s) | 485 |
| BstNSI | RCATGY | 1 cut(s) | 366 |
| BstSCI | CCNGG | 1 cut(s) | 483 |
| BstV1I | GCAGC | 1 cut(s) | 4 |
| BstV2I | GAAGAC | 1 cut(s) | 535 |
| BsuRI | GGCC | 4 cut(s) | 24, 103, 118, 297 |
| BtsCI | GGATG | 1 cut(s) | 571 |
| BtsIMutI | CAGTG | 2 cut(s) | 37, 560 |
| Cac8I | GCNNGC | 4 cut(s) | 22, 53, 288, 378 |
| Cfr13I | GGNCC | 3 cut(s) | 22, 27, 296 |
| CviAII | CATG | 7 cut(s) | 70, 99, 162, 251, 363, 554, 706 |
| DdeI | CTNAG | 1 cut(s) | 56 |
| DpnI | GATC | 2 cut(s) | 654, 768 |
| DpnII | GATC | 2 cut(s) | 652, 766 |
| DraI | TTTAAA | 1 cut(s) | 315 |
| EaeI | YGGCCR | 1 cut(s) | 116 |
| Eam1104I | CTCTTC | 2 cut(s) | 213, 783 |
| EarI | CTCTTC | 2 cut(s) | 213, 783 |
| Eco32I | GATATC | 1 cut(s) | 727 |
| Eco47I | GGWCC | 1 cut(s) | 27 |
| Eco72I | CACGTG | 1 cut(s) | 84 |
| EcoO109I | RGGNCCY | 1 cut(s) | 296 |
| EcoRII | CCWGG | 1 cut(s) | 483 |
| EcoRV | GATATC | 1 cut(s) | 727 |
| FaeI | CATG | 7 cut(s) | 73, 102, 165, 254, 366, 557, 709 |
| FalI | AAGNNNNNCTT | 4 cut(s) | 447, 479, 527, 559 |
| FatI | CATG | 7 cut(s) | 69, 98, 161, 250, 362, 553, 705 |
| FauI | CCCGC | 2 cut(s) | 13, 369 |
| FauNDI | CATATG | 1 cut(s) | 136 |
| FbaI | TGATCA | 1 cut(s) | 652 |
| FblI | GTMKAC | 1 cut(s) | 639 |
| Fnu4HI | GCNGC | 1 cut(s) | 18 |
| FokI | GGATG | 1 cut(s) | 578 |
| Fsp4HI | GCNGC | 1 cut(s) | 18 |
| FspBI | CTAG | 4 cut(s) | 11, 287, 300, 587 |
| GluI | GCNGC | 1 cut(s) | 18 |
| HaeIII | GGCC | 4 cut(s) | 24, 103, 118, 297 |
| HapII | CCGG | 1 cut(s) | 25 |
| Hin1II | CATG | 7 cut(s) | 73, 102, 165, 254, 366, 557, 709 |
| HincII | GTYRAC | 1 cut(s) | 481 |
| HindII | GTYRAC | 1 cut(s) | 481 |
| HinfI | GANTC | 3 cut(s) | 7, 227, 614 |
| HpaI | GTTAAC | 1 cut(s) | 481 |
| HpaII | CCGG | 1 cut(s) | 25 |
| Hpy166II | GTNNAC | 2 cut(s) | 481, 640 |
| Hpy188I | TCNGA | 1 cut(s) | 193 |
| Hpy188III | TCNNGA | 2 cut(s) | 212, 760 |
| Hpy8I | GTNNAC | 2 cut(s) | 481, 640 |
| HpyAV | CCTTC | 2 cut(s) | 483, 665 |
| HpyCH4III | ACNGT | 2 cut(s) | 132, 310 |
| HpyCH4IV | ACGT | 1 cut(s) | 83 |
| HpyCH4V | TGCA | 3 cut(s) | 345, 620, 776 |
| HpyF10VI | GCNNNNNNNGC | 2 cut(s) | 109, 524 |
| HpyF3I | CTNAG | 1 cut(s) | 56 |
| HpySE526I | ACGT | 1 cut(s) | 83 |
| Hsp92II | CATG | 7 cut(s) | 73, 102, 165, 254, 366, 557, 709 |
| Ksp22I | TGATCA | 1 cut(s) | 652 |
| KspAI | GTTAAC | 1 cut(s) | 481 |
| Kzo9I | GATC | 2 cut(s) | 652, 766 |
| LguI | GCTCTTC | 1 cut(s) | 213 |
| LmnI | GCTCC | 1 cut(s) | 87 |
| LpnPI | CCDG | 8 cut(s) | 38, 43, 225, 270, 470, 497, 548, 745 |
| Lsp1109I | GCAGC | 1 cut(s) | 4 |
| LweI | GCATC | 1 cut(s) | 75 |
| MaeI | CTAG | 4 cut(s) | 11, 287, 300, 587 |
| MaeII | ACGT | 1 cut(s) | 83 |
| MalI | GATC | 2 cut(s) | 654, 768 |
| MboI | GATC | 2 cut(s) | 652, 766 |
| MboII | GAAGA | 3 cut(s) | 200, 535, 731 |
| MhlI | GDGCHC | 1 cut(s) | 208 |
| MlsI | TGGCCA | 1 cut(s) | 118 |
| MluCI | AATT | 5 cut(s) | 93, 144, 243, 571, 745 |
| MluNI | TGGCCA | 1 cut(s) | 118 |
| MlyI | GAGTC | 1 cut(s) | 236 |
| MnlI | CCTC | 7 cut(s) | 114, 273, 364, 682, 706, 732, 745 |
| Mox20I | TGGCCA | 1 cut(s) | 118 |
| MscI | TGGCCA | 1 cut(s) | 118 |
| MseI | TTAA | 3 cut(s) | 314, 336, 480 |
| MslI | CAYNNNNRTG | 1 cut(s) | 504 |
| Msp20I | TGGCCA | 1 cut(s) | 118 |
| MspI | CCGG | 1 cut(s) | 25 |
| MspR9I | CCNGG | 1 cut(s) | 485 |
| MvaI | CCWGG | 1 cut(s) | 485 |
| MwoI | GCNNNNNNNGC | 2 cut(s) | 109, 524 |
| NdeI | CATATG | 1 cut(s) | 136 |
| NdeII | GATC | 2 cut(s) | 652, 766 |
| NheI | GCTAGC | 1 cut(s) | 286 |
| NlaIII | CATG | 7 cut(s) | 73, 102, 165, 254, 366, 557, 709 |
| NlaIV | GGNNCC | 1 cut(s) | 89 |
| NspI | RCATGY | 1 cut(s) | 366 |
| PciSI | GCTCTTC | 1 cut(s) | 213 |
| PfeI | GAWTC | 2 cut(s) | 7, 614 |
| PkrI | GCNGC | 1 cut(s) | 19 |
| PleI | GAGTC | 1 cut(s) | 235 |
| PmaCI | CACGTG | 1 cut(s) | 84 |
| PmlI | CACGTG | 1 cut(s) | 84 |
| PpsI | GAGTC | 1 cut(s) | 235 |
| Ppu21I | YACGTR | 1 cut(s) | 84 |
| Psp6I | CCWGG | 1 cut(s) | 483 |
| PspCI | CACGTG | 1 cut(s) | 84 |
| PspGI | CCWGG | 1 cut(s) | 483 |
| PspN4I | GGNNCC | 1 cut(s) | 89 |
| PspPI | GGNCC | 3 cut(s) | 22, 27, 296 |
| RseI | CAYNNNNRTG | 1 cut(s) | 504 |
| SapI | GCTCTTC | 1 cut(s) | 213 |
| SaqAI | TTAA | 3 cut(s) | 314, 336, 480 |
| SatI | GCNGC | 1 cut(s) | 18 |
| Sau3AI | GATC | 2 cut(s) | 652, 766 |
| Sau96I | GGNCC | 3 cut(s) | 22, 27, 296 |
| SchI | GAGTC | 1 cut(s) | 236 |
| ScrFI | CCNGG | 1 cut(s) | 485 |
| SduI | GDGCHC | 1 cut(s) | 208 |
| SfaNI | GCATC | 1 cut(s) | 75 |
| SinI | GGWCC | 1 cut(s) | 27 |
| SmiMI | CAYNNNNRTG | 1 cut(s) | 504 |
| SmlI | CTYRAG | 2 cut(s) | 291, 528 |
| SmoI | CTYRAG | 2 cut(s) | 291, 528 |
| Sse9I | AATT | 5 cut(s) | 93, 144, 243, 571, 745 |
| SsiI | CCGC | 2 cut(s) | 20, 376 |
| SspI | AATATT | 1 cut(s) | 646 |
| SspMI | CTAG | 4 cut(s) | 11, 287, 300, 587 |
| StyD4I | CCNGG | 1 cut(s) | 483 |
| TaaI | ACNGT | 2 cut(s) | 132, 310 |
| TaiI | ACGT | 1 cut(s) | 86 |
| TaqI | TCGA | 1 cut(s) | 521 |
| TasI | AATT | 5 cut(s) | 93, 144, 243, 571, 745 |
| TfiI | GAWTC | 2 cut(s) | 7, 614 |
| Tru1I | TTAA | 3 cut(s) | 314, 336, 480 |
| Tru9I | TTAA | 3 cut(s) | 314, 336, 480 |
| TscAI | CASTG | 2 cut(s) | 37, 567 |
| TseI | GCWGC | 1 cut(s) | 17 |
| TspDTI | ATGAA | 2 cut(s) | 267, 722 |
| TspGWI | ACGGA | 1 cut(s) | 408 |
| TspRI | CASTG | 2 cut(s) | 37, 567 |
| VpaK11BI | GGWCC | 1 cut(s) | 27 |
| XceI | RCATGY | 1 cut(s) | 366 |
| XcmI | CCANNNNNNNNNTGG | 1 cut(s) | 229 |
| XmiI | GTMKAC | 1 cut(s) | 639 |
| XspI | CTAG | 4 cut(s) | 11, 287, 300, 587 |