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| Enzyme | Recognition Site | Cut Count | Positions (bp) |
|---|---|---|---|
| AarI | CACCTGC | 1 cut(s) | 860 |
| AasI | GACNNNNNNGTC | 1 cut(s) | 186 |
| Acc36I | ACCTGC | 1 cut(s) | 860 |
| Acc65I | GGTACC | 1 cut(s) | 1099 |
| AccB1I | GGYRCC | 1 cut(s) | 1099 |
| AccI | GTMKAC | 1 cut(s) | 7 |
| AccII | CGCG | 1 cut(s) | 943 |
| AccIII | TCCGGA | 2 cut(s) | 581, 1288 |
| AciI | CCGC | 1 cut(s) | 459 |
| AclWI | GGATC | 4 cut(s) | 556, 569, 1196, 1244 |
| AcoI | YGGCCR | 1 cut(s) | 1215 |
| AcsI | RAATTY | 2 cut(s) | 386, 1233 |
| AfaI | GTAC | 4 cut(s) | 150, 534, 1101, 1281 |
| AfiI | CCNNNNNNNGG | 1 cut(s) | 611 |
| AflIII | ACRYGT | 1 cut(s) | 529 |
| AgeI | ACCGGT | 1 cut(s) | 262 |
| AgsI | TTSAA | 7 cut(s) | 22, 503, 724, 766, 931, 965, 1340 |
| AhdI | GACNNNNNGTC | 1 cut(s) | 52 |
| AjnI | CCWGG | 1 cut(s) | 357 |
| AleI | CACNNNNGTG | 1 cut(s) | 663 |
| AluBI | AGCT | 3 cut(s) | 617, 652, 1327 |
| AluI | AGCT | 3 cut(s) | 617, 652, 1327 |
| Alw26I | GTCTC | 3 cut(s) | 380, 1290, 1376 |
| AlwI | GGATC | 4 cut(s) | 556, 569, 1196, 1244 |
| Aor13HI | TCCGGA | 2 cut(s) | 581, 1288 |
| AoxI | GGCC | 1 cut(s) | 1215 |
| ApeKI | GCWGC | 2 cut(s) | 312, 597 |
| ApoI | RAATTY | 2 cut(s) | 386, 1233 |
| AsiGI | ACCGGT | 1 cut(s) | 262 |
| Asp700I | GAANNNNTTC | 1 cut(s) | 74 |
| Asp718I | GGTACC | 1 cut(s) | 1099 |
| AspLEI | GCGC | 1 cut(s) | 943 |
| AspS9I | GGNCC | 3 cut(s) | 461, 875, 889 |
| AsuHPI | GGTGA | 2 cut(s) | 413, 1415 |
| AsuNHI | GCTAGC | 1 cut(s) | 652 |
| AvaII | GGWCC | 3 cut(s) | 461, 875, 889 |
| AxyI | CCTNAGG | 1 cut(s) | 471 |
| BalI | TGGCCA | 1 cut(s) | 1217 |
| BamHI | GGATCC | 1 cut(s) | 561 |
| BanI | GGYRCC | 1 cut(s) | 1099 |
| BbvI | GCAGC | 2 cut(s) | 324, 584 |
| BccI | CCATC | 3 cut(s) | 629, 1381, 1424 |
| BceAI | ACGGC | 1 cut(s) | 1069 |
| BciT130I | CCWGG | 1 cut(s) | 359 |
| BciVI | GTATCC | 1 cut(s) | 1053 |
| BclI | TGATCA | 1 cut(s) | 1261 |
| BcoDI | GTCTC | 3 cut(s) | 380, 1290, 1376 |
| BfaI | CTAG | 7 cut(s) | 63, 80, 647, 653, 1008, 1134, 1328 |
| BfuAI | ACCTGC | 1 cut(s) | 860 |
| BfuI | GTATCC | 1 cut(s) | 1053 |
| BisI | GCNGC | 2 cut(s) | 313, 598 |
| BlsI | GCNGC | 2 cut(s) | 314, 599 |
| Bme1390I | CCNGG | 1 cut(s) | 359 |
| Bme18I | GGWCC | 3 cut(s) | 461, 875, 889 |
| BmeRI | GACNNNNNGTC | 1 cut(s) | 52 |
| BmgT120I | GGNCC | 3 cut(s) | 461, 875, 889 |
| BmiI | GGNNCC | 3 cut(s) | 563, 891, 1101 |
| BmrFI | CCNGG | 1 cut(s) | 359 |
| BmsI | GCATC | 2 cut(s) | 676, 982 |
| BmtI | GCTAGC | 1 cut(s) | 656 |
| BplI | GAGNNNNNCTC | 4 cut(s) | 506, 538, 1400, 1432 |
| BpuEI | CTTGAG | 1 cut(s) | 401 |
| BsaJI | CCNNGG | 2 cut(s) | 737, 1303 |
| BsaWI | WCCGGW | 4 cut(s) | 127, 262, 581, 1288 |
| BsaXI | ACNNNNNCTCC | 2 cut(s) | 213, 243 |
| Bsc4I | CCNNNNNNNGG | 1 cut(s) | 611 |
| Bse118I | RCCGGY | 2 cut(s) | 185, 262 |
| Bse1I | ACTGG | 3 cut(s) | 40, 342, 1103 |
| Bse21I | CCTNAGG | 1 cut(s) | 471 |
| Bse3DI | GCAATG | 2 cut(s) | 480, 1002 |
| BseAI | TCCGGA | 2 cut(s) | 581, 1288 |
| BseBI | CCWGG | 1 cut(s) | 359 |
| BseDI | CCNNGG | 2 cut(s) | 737, 1303 |
| BseGI | GGATG | 1 cut(s) | 140 |
| BseLI | CCNNNNNNNGG | 1 cut(s) | 611 |
| BseMI | GCAATG | 2 cut(s) | 480, 1002 |
| BseMII | CTCAG | 3 cut(s) | 462, 537, 696 |
| BseNI | ACTGG | 3 cut(s) | 40, 342, 1103 |
| BseXI | GCAGC | 2 cut(s) | 324, 584 |
| Bsh1236I | CGCG | 1 cut(s) | 943 |
| BshFI | GGCC | 1 cut(s) | 1217 |
| BshNI | GGYRCC | 1 cut(s) | 1099 |
| BshTI | ACCGGT | 1 cut(s) | 262 |
| BsiSI | CCGG | 5 cut(s) | 128, 186, 263, 582, 1289 |
| BslFI | GGGAC | 2 cut(s) | 59, 875 |
| BslI | CCNNNNNNNGG | 1 cut(s) | 611 |
| BsmAI | GTCTC | 3 cut(s) | 380, 1290, 1376 |
| BsmFI | GGGAC | 2 cut(s) | 59, 875 |
| BsnI | GGCC | 1 cut(s) | 1217 |
| Bsp13I | TCCGGA | 2 cut(s) | 581, 1288 |
| Bsp143I | GATC | 5 cut(s) | 561, 956, 1201, 1249, 1261 |
| Bsp19I | CCATGG | 1 cut(s) | 1303 |
| BspACI | CCGC | 1 cut(s) | 459 |
| BspANI | GGCC | 1 cut(s) | 1217 |
| BspCNI | CTCAG | 3 cut(s) | 463, 536, 697 |
| BspEI | TCCGGA | 2 cut(s) | 581, 1288 |
| BspFNI | CGCG | 1 cut(s) | 943 |
| BspLI | GGNNCC | 3 cut(s) | 563, 891, 1101 |
| BspMI | ACCTGC | 1 cut(s) | 860 |
| BspOI | GCTAGC | 1 cut(s) | 656 |
| BspPI | GGATC | 4 cut(s) | 556, 569, 1196, 1244 |
| BspQI | GCTCTTC | 1 cut(s) | 1317 |
| BspT107I | GGYRCC | 1 cut(s) | 1099 |
| BsrDI | GCAATG | 2 cut(s) | 480, 1002 |
| BsrFI | RCCGGY | 2 cut(s) | 185, 262 |
| BsrI | ACTGG | 3 cut(s) | 40, 342, 1103 |
| BssAI | RCCGGY | 2 cut(s) | 185, 262 |
| BssECI | CCNNGG | 2 cut(s) | 737, 1303 |
| BssMI | GATC | 5 cut(s) | 561, 956, 1201, 1249, 1261 |
| BssNAI | GTATAC | 1 cut(s) | 8 |
| BssT1I | CCWWGG | 2 cut(s) | 737, 1303 |
| Bst1107I | GTATAC | 1 cut(s) | 8 |
| Bst2UI | CCWGG | 1 cut(s) | 359 |
| Bst4CI | ACNGT | 6 cut(s) | 124, 370, 430, 556, 971, 1284 |
| Bst6I | CTCTTC | 3 cut(s) | 299, 498, 1317 |
| BstC8I | GCNNGC | 3 cut(s) | 351, 602, 654 |
| BstDEI | CTNAG | 3 cut(s) | 471, 523, 705 |
| BstDSI | CCRYGG | 1 cut(s) | 1303 |
| BstF5I | GGATG | 1 cut(s) | 140 |
| BstFNI | CGCG | 1 cut(s) | 943 |
| BstHHI | GCGC | 1 cut(s) | 943 |
| BstKTI | GATC | 5 cut(s) | 564, 959, 1204, 1252, 1264 |
| BstMAI | GTCTC | 3 cut(s) | 380, 1290, 1376 |
| BstMBI | GATC | 5 cut(s) | 561, 956, 1201, 1249, 1261 |
| BstMWI | GCNNNNNNNGC | 2 cut(s) | 649, 839 |
| BstNI | CCWGG | 1 cut(s) | 359 |
| BstNSI | RCATGY | 1 cut(s) | 1226 |
| BstSCI | CCNGG | 1 cut(s) | 357 |
| BstUI | CGCG | 1 cut(s) | 943 |
| BstV1I | GCAGC | 2 cut(s) | 324, 584 |
| BstX2I | RGATCY | 2 cut(s) | 561, 1249 |
| BstXI | CCANNNNNNTGG | 1 cut(s) | 1310 |
| BstYI | RGATCY | 2 cut(s) | 561, 1249 |
| BstZ17I | GTATAC | 1 cut(s) | 8 |
| Bsu36I | CCTNAGG | 1 cut(s) | 471 |
| BsuI | GTATCC | 1 cut(s) | 1053 |
| BsuRI | GGCC | 1 cut(s) | 1217 |
| BtgI | CCRYGG | 1 cut(s) | 1303 |
| BtgZI | GCGATG | 1 cut(s) | 1449 |
| BtsCI | GGATG | 1 cut(s) | 140 |
| BtsIMutI | CAGTG | 4 cut(s) | 12, 33, 702, 976 |
| BveI | ACCTGC | 1 cut(s) | 860 |
| Cac8I | GCNNGC | 3 cut(s) | 351, 602, 654 |
| CfoI | GCGC | 1 cut(s) | 943 |
| Cfr10I | RCCGGY | 2 cut(s) | 185, 262 |
| Cfr13I | GGNCC | 3 cut(s) | 461, 875, 889 |
| CpoI | CGGWCCG | 1 cut(s) | 461 |
| CsiI | ACCWGGT | 1 cut(s) | 357 |
| Csp6I | GTAC | 4 cut(s) | 149, 533, 1100, 1280 |
| CspAI | ACCGGT | 1 cut(s) | 262 |
| CspI | CGGWCCG | 1 cut(s) | 461 |
| CviAII | CATG | 5 cut(s) | 200, 539, 911, 1223, 1304 |
| CviQI | GTAC | 4 cut(s) | 149, 533, 1100, 1280 |
| DdeI | CTNAG | 3 cut(s) | 471, 523, 705 |
| DpnI | GATC | 5 cut(s) | 563, 958, 1203, 1251, 1263 |
| DpnII | GATC | 5 cut(s) | 561, 956, 1201, 1249, 1261 |
| DraI | TTTAAA | 3 cut(s) | 114, 301, 1197 |
| DrdI | GACNNNNNNGTC | 1 cut(s) | 186 |
| DriI | GACNNNNNGTC | 1 cut(s) | 52 |
| DseDI | GACNNNNNNGTC | 1 cut(s) | 186 |
| EaeI | YGGCCR | 1 cut(s) | 1215 |
| Eam1104I | CTCTTC | 3 cut(s) | 299, 498, 1317 |
| Eam1105I | GACNNNNNGTC | 1 cut(s) | 52 |
| EarI | CTCTTC | 3 cut(s) | 299, 498, 1317 |
| Eco130I | CCWWGG | 2 cut(s) | 737, 1303 |
| Eco47I | GGWCC | 3 cut(s) | 461, 875, 889 |
| Eco81I | CCTNAGG | 1 cut(s) | 471 |
| EcoO109I | RGGNCCY | 1 cut(s) | 889 |
| EcoRII | CCWGG | 1 cut(s) | 357 |
| EcoT14I | CCWWGG | 2 cut(s) | 737, 1303 |
| ErhI | CCWWGG | 2 cut(s) | 737, 1303 |
| FaeI | CATG | 5 cut(s) | 203, 542, 914, 1226, 1307 |
| FalI | AAGNNNNNCTT | 2 cut(s) | 1239, 1271 |
| FaqI | GGGAC | 2 cut(s) | 59, 875 |
| FatI | CATG | 5 cut(s) | 199, 538, 910, 1222, 1303 |
| FauNDI | CATATG | 1 cut(s) | 711 |
| FbaI | TGATCA | 1 cut(s) | 1261 |
| FblI | GTMKAC | 1 cut(s) | 7 |
| Fnu4HI | GCNGC | 2 cut(s) | 313, 598 |
| FokI | GGATG | 1 cut(s) | 127 |
| Fsp4HI | GCNGC | 2 cut(s) | 313, 598 |
| FspBI | CTAG | 7 cut(s) | 63, 80, 647, 653, 1008, 1134, 1328 |
| GlaI | GCGC | 1 cut(s) | 942 |
| GluI | GCNGC | 2 cut(s) | 313, 598 |
| HaeIII | GGCC | 1 cut(s) | 1217 |
| HapII | CCGG | 5 cut(s) | 128, 186, 263, 582, 1289 |
| HhaI | GCGC | 1 cut(s) | 943 |
| Hin1II | CATG | 5 cut(s) | 203, 542, 914, 1226, 1307 |
| Hin6I | GCGC | 1 cut(s) | 941 |
| HinP1I | GCGC | 1 cut(s) | 941 |
| HincII | GTYRAC | 1 cut(s) | 1131 |
| HindII | GTYRAC | 1 cut(s) | 1131 |
| HinfI | GANTC | 6 cut(s) | 180, 418, 585, 634, 1127, 1140 |
| HpaII | CCGG | 5 cut(s) | 128, 186, 263, 582, 1289 |
| HphI | GGTGA | 2 cut(s) | 413, 1415 |
| Hpy166II | GTNNAC | 5 cut(s) | 8, 533, 875, 1081, 1131 |
| Hpy188I | TCNGA | 3 cut(s) | 526, 850, 956 |
| Hpy188III | TCNNGA | 5 cut(s) | 470, 582, 612, 1289, 1427 |
| Hpy8I | GTNNAC | 5 cut(s) | 8, 533, 875, 1081, 1131 |
| HpyAV | CCTTC | 2 cut(s) | 16, 1433 |
| HpyCH4III | ACNGT | 6 cut(s) | 124, 370, 430, 556, 971, 1284 |
| HpyCH4IV | ACGT | 2 cut(s) | 244, 529 |
| HpyF10VI | GCNNNNNNNGC | 2 cut(s) | 649, 839 |
| HpyF3I | CTNAG | 3 cut(s) | 471, 523, 705 |
| HpySE526I | ACGT | 2 cut(s) | 244, 529 |
| Hsp92II | CATG | 5 cut(s) | 203, 542, 914, 1226, 1307 |
| HspAI | GCGC | 1 cut(s) | 941 |
| Kpn2I | TCCGGA | 2 cut(s) | 581, 1288 |
| KpnI | GGTACC | 1 cut(s) | 1103 |
| Ksp22I | TGATCA | 1 cut(s) | 1261 |
| Kzo9I | GATC | 5 cut(s) | 561, 956, 1201, 1249, 1261 |
| LguI | GCTCTTC | 1 cut(s) | 1317 |
| LmnI | GCTCC | 1 cut(s) | 614 |
| Lsp1109I | GCAGC | 2 cut(s) | 324, 584 |
| LweI | GCATC | 2 cut(s) | 676, 982 |
| MabI | ACCWGGT | 1 cut(s) | 357 |
| MaeI | CTAG | 7 cut(s) | 63, 80, 647, 653, 1008, 1134, 1328 |
| MaeII | ACGT | 2 cut(s) | 244, 529 |
| MaeIII | GTNAC | 3 cut(s) | 547, 944, 1313 |
| MalI | GATC | 5 cut(s) | 563, 958, 1203, 1251, 1263 |
| MboI | GATC | 5 cut(s) | 561, 956, 1201, 1249, 1261 |
| MboII | GAAGA | 8 cut(s) | 218, 286, 515, 695, 778, 1259, 1334, 1343 |
| MfeI | CAATTG | 2 cut(s) | 510, 1377 |
| MflI | RGATCY | 2 cut(s) | 561, 1249 |
| MlsI | TGGCCA | 1 cut(s) | 1217 |
| MluCI | AATT | 7 cut(s) | 276, 386, 510, 716, 1233, 1355, 1377 |
| MluNI | TGGCCA | 1 cut(s) | 1217 |
| MlyI | GAGTC | 3 cut(s) | 174, 579, 1136 |
| MmeI | TCCRAC | 2 cut(s) | 47, 1431 |
| MnlI | CCTC | 8 cut(s) | 163, 302, 409, 466, 499, 801, 880, 1426 |
| Mox20I | TGGCCA | 1 cut(s) | 1217 |
| MroI | TCCGGA | 2 cut(s) | 581, 1288 |
| MroXI | GAANNNNTTC | 1 cut(s) | 74 |
| MscI | TGGCCA | 1 cut(s) | 1217 |
| MslI | CAYNNNNRTG | 6 cut(s) | 215, 543, 629, 663, 915, 1197 |
| Msp20I | TGGCCA | 1 cut(s) | 1217 |
| MspI | CCGG | 5 cut(s) | 128, 186, 263, 582, 1289 |
| MspR9I | CCNGG | 1 cut(s) | 359 |
| MunI | CAATTG | 2 cut(s) | 510, 1377 |
| MvaI | CCWGG | 1 cut(s) | 359 |
| MvnI | CGCG | 1 cut(s) | 943 |
| MwoI | GCNNNNNNNGC | 2 cut(s) | 649, 839 |
| NcoI | CCATGG | 1 cut(s) | 1303 |
| NdeI | CATATG | 1 cut(s) | 711 |
| NdeII | GATC | 5 cut(s) | 561, 956, 1201, 1249, 1261 |
| NheI | GCTAGC | 1 cut(s) | 652 |
| NlaIII | CATG | 5 cut(s) | 203, 542, 914, 1226, 1307 |
| NlaIV | GGNNCC | 3 cut(s) | 563, 891, 1101 |
| NmuCI | GTSAC | 1 cut(s) | 944 |
| NspI | RCATGY | 1 cut(s) | 1226 |
| OliI | CACNNNNGTG | 1 cut(s) | 663 |
| PaqCI | CACCTGC | 1 cut(s) | 860 |
| PciSI | GCTCTTC | 1 cut(s) | 1317 |
| PdmI | GAANNNNTTC | 1 cut(s) | 74 |
| PfeI | GAWTC | 3 cut(s) | 418, 634, 1140 |
| PflFI | GACNNNGTC | 1 cut(s) | 950 |
| PinAI | ACCGGT | 1 cut(s) | 262 |
| PkrI | GCNGC | 2 cut(s) | 314, 599 |
| PleI | GAGTC | 3 cut(s) | 174, 579, 1135 |
| PpsI | GAGTC | 3 cut(s) | 174, 579, 1135 |
| PpuMI | RGGWCCY | 1 cut(s) | 889 |
| Psp5II | RGGWCCY | 1 cut(s) | 889 |
| Psp6I | CCWGG | 1 cut(s) | 357 |
| PspGI | CCWGG | 1 cut(s) | 357 |
| PspN4I | GGNNCC | 3 cut(s) | 563, 891, 1101 |
| PspPI | GGNCC | 3 cut(s) | 461, 875, 889 |
| PspPPI | RGGWCCY | 1 cut(s) | 889 |
| PsuI | RGATCY | 2 cut(s) | 561, 1249 |
| PsyI | GACNNNGTC | 1 cut(s) | 950 |
| RsaI | GTAC | 4 cut(s) | 150, 534, 1101, 1281 |
| RsaNI | GTAC | 4 cut(s) | 149, 533, 1100, 1280 |
| RseI | CAYNNNNRTG | 6 cut(s) | 215, 543, 629, 663, 915, 1197 |
| Rsr2I | CGGWCCG | 1 cut(s) | 461 |
| RsrII | CGGWCCG | 1 cut(s) | 461 |
| SapI | GCTCTTC | 1 cut(s) | 1317 |
| SatI | GCNGC | 2 cut(s) | 313, 598 |
| Sau3AI | GATC | 5 cut(s) | 561, 956, 1201, 1249, 1261 |
| Sau96I | GGNCC | 3 cut(s) | 461, 875, 889 |
| SchI | GAGTC | 3 cut(s) | 174, 579, 1136 |
| ScrFI | CCNGG | 1 cut(s) | 359 |
| SexAI | ACCWGGT | 1 cut(s) | 357 |
| SfaNI | GCATC | 2 cut(s) | 676, 982 |
| SinI | GGWCC | 3 cut(s) | 461, 875, 889 |
| SmiI | ATTTAAAT | 1 cut(s) | 1197 |
| SmiMI | CAYNNNNRTG | 6 cut(s) | 215, 543, 629, 663, 915, 1197 |
| SmlI | CTYRAG | 1 cut(s) | 380 |
| SmoI | CTYRAG | 1 cut(s) | 380 |
| Sse9I | AATT | 7 cut(s) | 276, 386, 510, 716, 1233, 1355, 1377 |
| SsiI | CCGC | 1 cut(s) | 459 |
| SspMI | CTAG | 7 cut(s) | 63, 80, 647, 653, 1008, 1134, 1328 |
| StyD4I | CCNGG | 1 cut(s) | 357 |
| StyI | CCWWGG | 2 cut(s) | 737, 1303 |
| SwaI | ATTTAAAT | 1 cut(s) | 1197 |
| TaaI | ACNGT | 6 cut(s) | 124, 370, 430, 556, 971, 1284 |
| TaiI | ACGT | 2 cut(s) | 247, 532 |
| TaqI | TCGA | 2 cut(s) | 450, 1426 |
| TasI | AATT | 7 cut(s) | 276, 386, 510, 716, 1233, 1355, 1377 |
| TatI | WGTACW | 1 cut(s) | 532 |
| TfiI | GAWTC | 3 cut(s) | 418, 634, 1140 |
| TscAI | CASTG | 4 cut(s) | 19, 40, 709, 976 |
| TseFI | GTSAC | 1 cut(s) | 944 |
| TseI | GCWGC | 2 cut(s) | 312, 597 |
| Tsp45I | GTSAC | 1 cut(s) | 944 |
| TspDTI | ATGAA | 8 cut(s) | 96, 129, 422, 527, 834, 1167, 1335, 1452 |
| TspGWI | ACGGA | 1 cut(s) | 453 |
| TspRI | CASTG | 4 cut(s) | 19, 40, 709, 976 |
| Tth111I | GACNNNGTC | 1 cut(s) | 950 |
| VpaK11BI | GGWCC | 3 cut(s) | 461, 875, 889 |
| XapI | RAATTY | 2 cut(s) | 386, 1233 |
| XceI | RCATGY | 1 cut(s) | 1226 |
| XmiI | GTMKAC | 1 cut(s) | 7 |
| XmnI | GAANNNNTTC | 1 cut(s) | 74 |
| XspI | CTAG | 7 cut(s) | 63, 80, 647, 653, 1008, 1134, 1328 |