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| Enzyme | Recognition Site | Cut Count | Positions (bp) |
|---|---|---|---|
| AciI | CCGC | 1 cut(s) | 471 |
| AclWI | GGATC | 1 cut(s) | 470 |
| AcoI | YGGCCR | 1 cut(s) | 161 |
| AcyI | GRCGYC | 1 cut(s) | 552 |
| AdeI | CACNNNGTG | 1 cut(s) | 279 |
| AfaI | GTAC | 1 cut(s) | 79 |
| AfiI | CCNNNNNNNGG | 2 cut(s) | 376, 606 |
| AgsI | TTSAA | 3 cut(s) | 218, 266, 530 |
| AluBI | AGCT | 1 cut(s) | 98 |
| AluI | AGCT | 1 cut(s) | 98 |
| Alw21I | GWGCWC | 1 cut(s) | 242 |
| Alw26I | GTCTC | 3 cut(s) | 61, 328, 543 |
| AlwI | GGATC | 1 cut(s) | 470 |
| AoxI | GGCC | 2 cut(s) | 161, 225 |
| ApeKI | GCWGC | 2 cut(s) | 473, 506 |
| AseI | ATTAAT | 1 cut(s) | 108 |
| Asp700I | GAANNNNTTC | 1 cut(s) | 54 |
| AspS9I | GGNCC | 1 cut(s) | 379 |
| AsuHPI | GGTGA | 1 cut(s) | 128 |
| AvaII | GGWCC | 1 cut(s) | 379 |
| BalI | TGGCCA | 1 cut(s) | 163 |
| BbsI | GAAGAC | 1 cut(s) | 576 |
| Bbv12I | GWGCWC | 1 cut(s) | 242 |
| BbvI | GCAGC | 2 cut(s) | 485, 518 |
| BccI | CCATC | 3 cut(s) | 84, 307, 428 |
| BcoDI | GTCTC | 3 cut(s) | 61, 328, 543 |
| BfaI | CTAG | 1 cut(s) | 359 |
| BisI | GCNGC | 3 cut(s) | 471, 474, 507 |
| BlsI | GCNGC | 3 cut(s) | 472, 475, 508 |
| BmcAI | AGTACT | 1 cut(s) | 79 |
| Bme18I | GGWCC | 1 cut(s) | 379 |
| BmgT120I | GGNCC | 1 cut(s) | 379 |
| BmiI | GGNNCC | 1 cut(s) | 381 |
| BmsI | GCATC | 1 cut(s) | 493 |
| BoxI | GACNNNNGTC | 1 cut(s) | 419 |
| BpiI | GAAGAC | 1 cut(s) | 576 |
| BpuEI | CTTGAG | 1 cut(s) | 59 |
| Bsa29I | ATCGAT | 1 cut(s) | 211 |
| BsaHI | GRCGYC | 1 cut(s) | 552 |
| BsaJI | CCNNGG | 1 cut(s) | 477 |
| BsaXI | ACNNNNNCTCC | 2 cut(s) | 308, 338 |
| Bsc4I | CCNNNNNNNGG | 2 cut(s) | 376, 606 |
| Bse118I | RCCGGY | 1 cut(s) | 599 |
| Bse1I | ACTGG | 2 cut(s) | 228, 421 |
| BseCI | ATCGAT | 1 cut(s) | 211 |
| BseDI | CCNNGG | 1 cut(s) | 477 |
| BseGI | GGATG | 2 cut(s) | 95, 571 |
| BseLI | CCNNNNNNNGG | 2 cut(s) | 376, 606 |
| BseMII | CTCAG | 1 cut(s) | 480 |
| BseNI | ACTGG | 2 cut(s) | 228, 421 |
| BseXI | GCAGC | 2 cut(s) | 485, 518 |
| BshFI | GGCC | 2 cut(s) | 163, 227 |
| BshVI | ATCGAT | 1 cut(s) | 211 |
| BsiHKAI | GWGCWC | 1 cut(s) | 242 |
| BsiSI | CCGG | 2 cut(s) | 546, 600 |
| BslFI | GGGAC | 2 cut(s) | 365, 427 |
| BslI | CCNNNNNNNGG | 2 cut(s) | 376, 606 |
| BsmAI | GTCTC | 3 cut(s) | 61, 328, 543 |
| BsmBI | CGTCTC | 1 cut(s) | 543 |
| BsmFI | GGGAC | 2 cut(s) | 365, 427 |
| BsnI | GGCC | 2 cut(s) | 163, 227 |
| Bsp1286I | GDGCHC | 1 cut(s) | 242 |
| Bsp143I | GATC | 1 cut(s) | 462 |
| BspACI | CCGC | 1 cut(s) | 471 |
| BspANI | GGCC | 2 cut(s) | 163, 227 |
| BspCNI | CTCAG | 1 cut(s) | 479 |
| BspDI | ATCGAT | 1 cut(s) | 211 |
| BspLI | GGNNCC | 1 cut(s) | 381 |
| BspPI | GGATC | 1 cut(s) | 470 |
| BspQI | GCTCTTC | 1 cut(s) | 230 |
| BsrFI | RCCGGY | 1 cut(s) | 599 |
| BsrI | ACTGG | 2 cut(s) | 228, 421 |
| BssAI | RCCGGY | 1 cut(s) | 599 |
| BssECI | CCNNGG | 1 cut(s) | 477 |
| BssMI | GATC | 1 cut(s) | 462 |
| BssNI | GRCGYC | 1 cut(s) | 552 |
| Bst4CI | ACNGT | 1 cut(s) | 142 |
| Bst6I | CTCTTC | 1 cut(s) | 230 |
| BstACI | GRCGYC | 1 cut(s) | 552 |
| BstDEI | CTNAG | 2 cut(s) | 466, 558 |
| BstF5I | GGATG | 2 cut(s) | 95, 571 |
| BstKTI | GATC | 1 cut(s) | 465 |
| BstMAI | GTCTC | 3 cut(s) | 61, 328, 543 |
| BstMBI | GATC | 1 cut(s) | 462 |
| BstMWI | GCNNNNNNNGC | 3 cut(s) | 506, 551, 600 |
| BstPAI | GACNNNNGTC | 1 cut(s) | 419 |
| BstV1I | GCAGC | 2 cut(s) | 485, 518 |
| BstV2I | GAAGAC | 1 cut(s) | 576 |
| BstX2I | RGATCY | 1 cut(s) | 462 |
| BstYI | RGATCY | 1 cut(s) | 462 |
| Bsu15I | ATCGAT | 1 cut(s) | 211 |
| BsuRI | GGCC | 2 cut(s) | 163, 227 |
| BsuTUI | ATCGAT | 1 cut(s) | 211 |
| BtsCI | GGATG | 2 cut(s) | 95, 571 |
| BtsIMutI | CAGTG | 1 cut(s) | 235 |
| Cfr10I | RCCGGY | 1 cut(s) | 599 |
| Cfr13I | GGNCC | 1 cut(s) | 379 |
| ClaI | ATCGAT | 1 cut(s) | 211 |
| CseI | GACGC | 1 cut(s) | 560 |
| Csp6I | GTAC | 1 cut(s) | 78 |
| CviAII | CATG | 1 cut(s) | 44 |
| CviQI | GTAC | 1 cut(s) | 78 |
| DdeI | CTNAG | 2 cut(s) | 466, 558 |
| DpnI | GATC | 1 cut(s) | 464 |
| DpnII | GATC | 1 cut(s) | 462 |
| DraIII | CACNNNGTG | 1 cut(s) | 279 |
| EaeI | YGGCCR | 1 cut(s) | 161 |
| Eam1104I | CTCTTC | 1 cut(s) | 230 |
| EarI | CTCTTC | 1 cut(s) | 230 |
| Eco47I | GGWCC | 1 cut(s) | 379 |
| EcoO109I | RGGNCCY | 1 cut(s) | 379 |
| EcoT22I | ATGCAT | 1 cut(s) | 6 |
| Esp3I | CGTCTC | 1 cut(s) | 543 |
| FaeI | CATG | 1 cut(s) | 47 |
| FaqI | GGGAC | 2 cut(s) | 365, 427 |
| FatI | CATG | 1 cut(s) | 43 |
| Fnu4HI | GCNGC | 3 cut(s) | 471, 474, 507 |
| FokI | GGATG | 2 cut(s) | 102, 578 |
| Fsp4HI | GCNGC | 3 cut(s) | 471, 474, 507 |
| FspBI | CTAG | 1 cut(s) | 359 |
| GluI | GCNGC | 3 cut(s) | 471, 474, 507 |
| HaeIII | GGCC | 2 cut(s) | 163, 227 |
| HapII | CCGG | 2 cut(s) | 546, 600 |
| HgaI | GACGC | 1 cut(s) | 560 |
| Hin1I | GRCGYC | 1 cut(s) | 552 |
| Hin1II | CATG | 1 cut(s) | 47 |
| HinfI | GANTC | 2 cut(s) | 208, 321 |
| HpaII | CCGG | 2 cut(s) | 546, 600 |
| HphI | GGTGA | 1 cut(s) | 128 |
| Hpy188I | TCNGA | 4 cut(s) | 28, 136, 481, 614 |
| Hpy188III | TCNNGA | 2 cut(s) | 359, 451 |
| HpyAV | CCTTC | 3 cut(s) | 65, 498, 584 |
| HpyCH4III | ACNGT | 1 cut(s) | 142 |
| HpyCH4V | TGCA | 3 cut(s) | 4, 293, 506 |
| HpyF10VI | GCNNNNNNNGC | 3 cut(s) | 506, 551, 600 |
| HpyF3I | CTNAG | 2 cut(s) | 466, 558 |
| Hsp92I | GRCGYC | 1 cut(s) | 552 |
| Hsp92II | CATG | 1 cut(s) | 47 |
| Kzo9I | GATC | 1 cut(s) | 462 |
| LguI | GCTCTTC | 1 cut(s) | 230 |
| LmnI | GCTCC | 1 cut(s) | 453 |
| LpnPI | CCDG | 6 cut(s) | 174, 241, 402, 436, 559, 592 |
| Lsp1109I | GCAGC | 2 cut(s) | 485, 518 |
| LweI | GCATC | 1 cut(s) | 493 |
| MaeI | CTAG | 1 cut(s) | 359 |
| MaeIII | GTNAC | 1 cut(s) | 518 |
| MalI | GATC | 1 cut(s) | 464 |
| MboI | GATC | 1 cut(s) | 462 |
| MboII | GAAGA | 7 cut(s) | 23, 182, 247, 322, 347, 443, 581 |
| MflI | RGATCY | 1 cut(s) | 462 |
| MhlI | GDGCHC | 1 cut(s) | 242 |
| MlsI | TGGCCA | 1 cut(s) | 163 |
| MluCI | AATT | 4 cut(s) | 109, 301, 371, 425 |
| MluNI | TGGCCA | 1 cut(s) | 163 |
| MlyI | GAGTC | 1 cut(s) | 330 |
| MnlI | CCTC | 5 cut(s) | 217, 453, 487, 520, 556 |
| Mox20I | TGGCCA | 1 cut(s) | 163 |
| Mph1103I | ATGCAT | 1 cut(s) | 6 |
| MroXI | GAANNNNTTC | 1 cut(s) | 54 |
| MscI | TGGCCA | 1 cut(s) | 163 |
| MseI | TTAA | 3 cut(s) | 60, 108, 375 |
| Msp20I | TGGCCA | 1 cut(s) | 163 |
| MspI | CCGG | 2 cut(s) | 546, 600 |
| MwoI | GCNNNNNNNGC | 3 cut(s) | 506, 551, 600 |
| NdeII | GATC | 1 cut(s) | 462 |
| NlaIII | CATG | 1 cut(s) | 47 |
| NlaIV | GGNNCC | 1 cut(s) | 381 |
| NmuCI | GTSAC | 1 cut(s) | 518 |
| NsiI | ATGCAT | 1 cut(s) | 6 |
| PciSI | GCTCTTC | 1 cut(s) | 230 |
| PdmI | GAANNNNTTC | 1 cut(s) | 54 |
| PfeI | GAWTC | 1 cut(s) | 208 |
| PflFI | GACNNNGTC | 1 cut(s) | 320 |
| PkrI | GCNGC | 3 cut(s) | 472, 475, 508 |
| PleI | GAGTC | 1 cut(s) | 329 |
| PpsI | GAGTC | 1 cut(s) | 329 |
| PpuMI | RGGWCCY | 1 cut(s) | 379 |
| PshAI | GACNNNNGTC | 1 cut(s) | 419 |
| PshBI | ATTAAT | 1 cut(s) | 108 |
| Psp5II | RGGWCCY | 1 cut(s) | 379 |
| PspN4I | GGNNCC | 1 cut(s) | 381 |
| PspPI | GGNCC | 1 cut(s) | 379 |
| PspPPI | RGGWCCY | 1 cut(s) | 379 |
| PsuI | RGATCY | 1 cut(s) | 462 |
| PsyI | GACNNNGTC | 1 cut(s) | 320 |
| RsaI | GTAC | 1 cut(s) | 79 |
| RsaNI | GTAC | 1 cut(s) | 78 |
| SapI | GCTCTTC | 1 cut(s) | 230 |
| SaqAI | TTAA | 3 cut(s) | 60, 108, 375 |
| SatI | GCNGC | 3 cut(s) | 471, 474, 507 |
| Sau3AI | GATC | 1 cut(s) | 462 |
| Sau96I | GGNCC | 1 cut(s) | 379 |
| ScaI | AGTACT | 1 cut(s) | 79 |
| SchI | GAGTC | 1 cut(s) | 330 |
| SduI | GDGCHC | 1 cut(s) | 242 |
| SetI | ASST | 3 cut(s) | 57, 100, 381 |
| SfaNI | GCATC | 1 cut(s) | 493 |
| SinI | GGWCC | 1 cut(s) | 379 |
| SmlI | CTYRAG | 1 cut(s) | 38 |
| SmoI | CTYRAG | 1 cut(s) | 38 |
| Sse9I | AATT | 4 cut(s) | 109, 301, 371, 425 |
| SsiI | CCGC | 1 cut(s) | 471 |
| SspMI | CTAG | 1 cut(s) | 359 |
| TaaI | ACNGT | 1 cut(s) | 142 |
| TaqI | TCGA | 2 cut(s) | 211, 283 |
| TasI | AATT | 4 cut(s) | 109, 301, 371, 425 |
| TatI | WGTACW | 1 cut(s) | 77 |
| TauI | GCSGC | 1 cut(s) | 473 |
| TfiI | GAWTC | 1 cut(s) | 208 |
| Tru1I | TTAA | 3 cut(s) | 60, 108, 375 |
| Tru9I | TTAA | 3 cut(s) | 60, 108, 375 |
| TscAI | CASTG | 1 cut(s) | 235 |
| TseFI | GTSAC | 1 cut(s) | 518 |
| TseI | GCWGC | 2 cut(s) | 473, 506 |
| Tsp45I | GTSAC | 1 cut(s) | 518 |
| TspDTI | ATGAA | 5 cut(s) | 63, 184, 526, 582, 594 |
| TspGWI | ACGGA | 1 cut(s) | 236 |
| TspRI | CASTG | 1 cut(s) | 235 |
| Tth111I | GACNNNGTC | 1 cut(s) | 320 |
| VpaK11BI | GGWCC | 1 cut(s) | 379 |
| VspI | ATTAAT | 1 cut(s) | 108 |
| XbaI | TCTAGA | 1 cut(s) | 358 |
| XmnI | GAANNNNTTC | 1 cut(s) | 54 |
| XspI | CTAG | 1 cut(s) | 359 |
| ZrmI | AGTACT | 1 cut(s) | 79 |
| Zsp2I | ATGCAT | 1 cut(s) | 6 |