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| Enzyme | Recognition Site | Cut Count | Positions (bp) |
|---|---|---|---|
| AanI | TTATAA | 1 cut(s) | 1281 |
| AarI | CACCTGC | 1 cut(s) | 713 |
| AatII | GACGTC | 1 cut(s) | 472 |
| Acc36I | ACCTGC | 1 cut(s) | 713 |
| AccB1I | GGYRCC | 1 cut(s) | 734 |
| AccBSI | CCGCTC | 1 cut(s) | 40 |
| AciI | CCGC | 2 cut(s) | 40, 1007 |
| AclWI | GGATC | 1 cut(s) | 914 |
| AcsI | RAATTY | 3 cut(s) | 109, 149, 1093 |
| AcyI | GRCGYC | 1 cut(s) | 469 |
| AdeI | CACNNNGTG | 2 cut(s) | 294, 714 |
| AfaI | GTAC | 4 cut(s) | 267, 574, 989, 1225 |
| AfiI | CCNNNNNNNGG | 2 cut(s) | 744, 1013 |
| AflIII | ACRYGT | 1 cut(s) | 949 |
| AgsI | TTSAA | 3 cut(s) | 71, 85, 101 |
| AhlI | ACTAGT | 1 cut(s) | 1157 |
| AleI | CACNNNNGTG | 1 cut(s) | 1158 |
| AluBI | AGCT | 3 cut(s) | 8, 451, 1127 |
| AluI | AGCT | 3 cut(s) | 8, 451, 1127 |
| Alw21I | GWGCWC | 3 cut(s) | 145, 1006, 1165 |
| Alw26I | GTCTC | 2 cut(s) | 1101, 1280 |
| Alw44I | GTGCAC | 1 cut(s) | 1161 |
| AlwI | GGATC | 1 cut(s) | 914 |
| Ama87I | CYCGRG | 2 cut(s) | 90, 961 |
| AoxI | GGCC | 2 cut(s) | 1120, 1301 |
| ApaLI | GTGCAC | 1 cut(s) | 1161 |
| ApoI | RAATTY | 3 cut(s) | 109, 149, 1093 |
| Asp700I | GAANNNNTTC | 1 cut(s) | 489 |
| AsuC2I | CCSGG | 1 cut(s) | 270 |
| AsuHPI | GGTGA | 3 cut(s) | 563, 572, 1112 |
| AvaI | CYCGRG | 2 cut(s) | 90, 961 |
| BaeGI | GKGCMC | 1 cut(s) | 1165 |
| BanI | GGYRCC | 1 cut(s) | 734 |
| Bbv12I | GWGCWC | 3 cut(s) | 145, 1006, 1165 |
| BccI | CCATC | 4 cut(s) | 458, 863, 900, 1097 |
| BcnI | CCSGG | 1 cut(s) | 270 |
| BcoDI | GTCTC | 2 cut(s) | 1101, 1280 |
| BcuI | ACTAGT | 1 cut(s) | 1157 |
| BfaI | CTAG | 2 cut(s) | 794, 1158 |
| BfuAI | ACCTGC | 1 cut(s) | 713 |
| BglII | AGATCT | 1 cut(s) | 545 |
| BmcAI | AGTACT | 1 cut(s) | 1225 |
| Bme1390I | CCNGG | 1 cut(s) | 270 |
| BmeT110I | CYCGRG | 2 cut(s) | 90, 961 |
| BmiI | GGNNCC | 3 cut(s) | 351, 408, 736 |
| BmrFI | CCNGG | 1 cut(s) | 270 |
| BmsI | GCATC | 6 cut(s) | 367, 944, 1125, 1132, 1154, 1249 |
| BpmI | CTGGAG | 1 cut(s) | 515 |
| Bpu10I | CCTNAGC | 2 cut(s) | 371, 452 |
| BpuMI | CCSGG | 1 cut(s) | 270 |
| BsaAI | YACGTR | 2 cut(s) | 146, 991 |
| BsaHI | GRCGYC | 1 cut(s) | 469 |
| BsaJI | CCNNGG | 2 cut(s) | 123, 269 |
| Bsc4I | CCNNNNNNNGG | 2 cut(s) | 744, 1013 |
| Bse1I | ACTGG | 2 cut(s) | 856, 1231 |
| BseDI | CCNNGG | 2 cut(s) | 123, 269 |
| BseGI | GGATG | 2 cut(s) | 279, 382 |
| BseLI | CCNNNNNNNGG | 2 cut(s) | 744, 1013 |
| BseMII | CTCAG | 3 cut(s) | 336, 657, 1170 |
| BseNI | ACTGG | 2 cut(s) | 856, 1231 |
| BseSI | GKGCMC | 1 cut(s) | 1165 |
| BsgI | GTGCAG | 1 cut(s) | 779 |
| Bsh1285I | CGRYCG | 1 cut(s) | 44 |
| BshFI | GGCC | 2 cut(s) | 1122, 1303 |
| BshNI | GGYRCC | 1 cut(s) | 734 |
| BsiEI | CGRYCG | 1 cut(s) | 44 |
| BsiHKAI | GWGCWC | 3 cut(s) | 145, 1006, 1165 |
| BsiHKCI | CYCGRG | 2 cut(s) | 90, 961 |
| BsiSI | CCGG | 1 cut(s) | 269 |
| BslFI | GGGAC | 1 cut(s) | 328 |
| BslI | CCNNNNNNNGG | 2 cut(s) | 744, 1013 |
| BsmAI | GTCTC | 2 cut(s) | 1101, 1280 |
| BsmFI | GGGAC | 1 cut(s) | 328 |
| BsmI | GAATGC | 1 cut(s) | 372 |
| BsnI | GGCC | 2 cut(s) | 1122, 1303 |
| BsoBI | CYCGRG | 2 cut(s) | 90, 961 |
| Bsp1286I | GDGCHC | 3 cut(s) | 145, 1006, 1165 |
| Bsp143I | GATC | 3 cut(s) | 545, 633, 919 |
| Bsp19I | CCATGG | 1 cut(s) | 123 |
| BspACI | CCGC | 2 cut(s) | 40, 1007 |
| BspANI | GGCC | 2 cut(s) | 1122, 1303 |
| BspCNI | CTCAG | 3 cut(s) | 337, 658, 1171 |
| BspLI | GGNNCC | 3 cut(s) | 351, 408, 736 |
| BspMI | ACCTGC | 1 cut(s) | 713 |
| BspPI | GGATC | 1 cut(s) | 914 |
| BspT107I | GGYRCC | 1 cut(s) | 734 |
| BsrBI | CCGCTC | 1 cut(s) | 40 |
| BsrI | ACTGG | 2 cut(s) | 856, 1231 |
| BssECI | CCNNGG | 2 cut(s) | 123, 269 |
| BssMI | GATC | 3 cut(s) | 545, 633, 919 |
| BssNI | GRCGYC | 1 cut(s) | 469 |
| BssT1I | CCWWGG | 1 cut(s) | 123 |
| Bst4CI | ACNGT | 4 cut(s) | 163, 557, 577, 1216 |
| Bst6I | CTCTTC | 1 cut(s) | 66 |
| BstACI | GRCGYC | 1 cut(s) | 469 |
| BstAPI | GCANNNNNTGC | 1 cut(s) | 213 |
| BstBAI | YACGTR | 2 cut(s) | 146, 991 |
| BstC8I | GCNNGC | 1 cut(s) | 1301 |
| BstDEI | CTNAG | 9 cut(s) | 291, 345, 371, 452, 657, 666, 844, 998, 1179 |
| BstDSI | CCRYGG | 1 cut(s) | 123 |
| BstENI | CCTNNNNNAGG | 1 cut(s) | 742 |
| BstF5I | GGATG | 2 cut(s) | 279, 382 |
| BstKTI | GATC | 3 cut(s) | 548, 636, 922 |
| BstMAI | GTCTC | 2 cut(s) | 1101, 1280 |
| BstMBI | GATC | 3 cut(s) | 545, 633, 919 |
| BstMCI | CGRYCG | 1 cut(s) | 44 |
| BstMWI | GCNNNNNNNGC | 3 cut(s) | 213, 1063, 1309 |
| BstNSI | RCATGY | 4 cut(s) | 384, 594, 953, 1057 |
| BstSCI | CCNGG | 1 cut(s) | 268 |
| BstSLI | GKGCMC | 1 cut(s) | 1165 |
| BstSNI | TACGTA | 1 cut(s) | 991 |
| BstX2I | RGATCY | 2 cut(s) | 545, 919 |
| BstYI | RGATCY | 2 cut(s) | 545, 919 |
| BsuRI | GGCC | 2 cut(s) | 1122, 1303 |
| BtgI | CCRYGG | 1 cut(s) | 123 |
| BtgZI | GCGATG | 1 cut(s) | 1148 |
| BtsCI | GGATG | 2 cut(s) | 279, 382 |
| BtsIMutI | CAGTG | 2 cut(s) | 342, 582 |
| BveI | ACCTGC | 1 cut(s) | 713 |
| Cac8I | GCNNGC | 1 cut(s) | 1301 |
| Csp6I | GTAC | 4 cut(s) | 266, 573, 988, 1224 |
| CviAII | CATG | 9 cut(s) | 124, 137, 305, 335, 381, 591, 618, 950, 1054 |
| CviQI | GTAC | 4 cut(s) | 266, 573, 988, 1224 |
| DdeI | CTNAG | 9 cut(s) | 291, 345, 371, 452, 657, 666, 844, 998, 1179 |
| DpnI | GATC | 3 cut(s) | 547, 635, 921 |
| DpnII | GATC | 3 cut(s) | 545, 633, 919 |
| DraI | TTTAAA | 1 cut(s) | 811 |
| DraIII | CACNNNGTG | 2 cut(s) | 294, 714 |
| Eam1104I | CTCTTC | 1 cut(s) | 66 |
| EarI | CTCTTC | 1 cut(s) | 66 |
| Eco105I | TACGTA | 1 cut(s) | 991 |
| Eco130I | CCWWGG | 1 cut(s) | 123 |
| Eco88I | CYCGRG | 2 cut(s) | 90, 961 |
| EcoNI | CCTNNNNNAGG | 1 cut(s) | 742 |
| EcoT14I | CCWWGG | 1 cut(s) | 123 |
| EcoT22I | ATGCAT | 2 cut(s) | 382, 1147 |
| ErhI | CCWWGG | 1 cut(s) | 123 |
| FaeI | CATG | 9 cut(s) | 127, 140, 308, 338, 384, 594, 621, 953, 1057 |
| FalI | AAGNNNNNCTT | 2 cut(s) | 435, 467 |
| FaqI | GGGAC | 1 cut(s) | 328 |
| FatI | CATG | 9 cut(s) | 123, 136, 304, 334, 380, 590, 617, 949, 1053 |
| FokI | GGATG | 2 cut(s) | 286, 389 |
| FspBI | CTAG | 2 cut(s) | 794, 1158 |
| GsuI | CTGGAG | 1 cut(s) | 515 |
| HaeIII | GGCC | 2 cut(s) | 1122, 1303 |
| HapII | CCGG | 1 cut(s) | 269 |
| Hin1I | GRCGYC | 1 cut(s) | 469 |
| Hin1II | CATG | 9 cut(s) | 127, 140, 308, 338, 384, 594, 621, 953, 1057 |
| HinfI | GANTC | 2 cut(s) | 181, 277 |
| HpaII | CCGG | 1 cut(s) | 269 |
| HphI | GGTGA | 3 cut(s) | 563, 572, 1112 |
| Hpy166II | GTNNAC | 1 cut(s) | 1163 |
| Hpy188I | TCNGA | 2 cut(s) | 510, 1150 |
| Hpy188III | TCNNGA | 3 cut(s) | 185, 494, 963 |
| Hpy8I | GTNNAC | 1 cut(s) | 1163 |
| HpyAV | CCTTC | 2 cut(s) | 305, 500 |
| HpyCH4III | ACNGT | 4 cut(s) | 163, 557, 577, 1216 |
| HpyCH4IV | ACGT | 6 cut(s) | 145, 229, 469, 904, 990, 1198 |
| HpyF10VI | GCNNNNNNNGC | 3 cut(s) | 213, 1063, 1309 |
| HpyF3I | CTNAG | 9 cut(s) | 291, 345, 371, 452, 657, 666, 844, 998, 1179 |
| HpySE526I | ACGT | 6 cut(s) | 145, 229, 469, 904, 990, 1198 |
| Hsp92I | GRCGYC | 1 cut(s) | 469 |
| Hsp92II | CATG | 9 cut(s) | 127, 140, 308, 338, 384, 594, 621, 953, 1057 |
| Kzo9I | GATC | 3 cut(s) | 545, 633, 919 |
| LmnI | GCTCC | 2 cut(s) | 37, 140 |
| LweI | GCATC | 6 cut(s) | 367, 944, 1125, 1132, 1154, 1249 |
| MaeI | CTAG | 2 cut(s) | 794, 1158 |
| MaeII | ACGT | 6 cut(s) | 145, 229, 469, 904, 990, 1198 |
| MaeIII | GTNAC | 3 cut(s) | 551, 673, 1174 |
| MalI | GATC | 3 cut(s) | 547, 635, 921 |
| MbiI | CCGCTC | 1 cut(s) | 40 |
| MboI | GATC | 3 cut(s) | 545, 633, 919 |
| MboII | GAAGA | 4 cut(s) | 33, 83, 490, 878 |
| MfeI | CAATTG | 1 cut(s) | 321 |
| MflI | RGATCY | 2 cut(s) | 545, 919 |
| MhlI | GDGCHC | 3 cut(s) | 145, 1006, 1165 |
| MmeI | TCCRAC | 1 cut(s) | 1235 |
| MnlI | CCTC | 7 cut(s) | 340, 573, 655, 694, 725, 1007, 1112 |
| Mph1103I | ATGCAT | 2 cut(s) | 382, 1147 |
| MroXI | GAANNNNTTC | 1 cut(s) | 489 |
| MseI | TTAA | 3 cut(s) | 459, 810, 1320 |
| MslI | CAYNNNNRTG | 2 cut(s) | 444, 1158 |
| MspI | CCGG | 1 cut(s) | 269 |
| MspR9I | CCNGG | 1 cut(s) | 270 |
| MunI | CAATTG | 1 cut(s) | 321 |
| Mva1269I | GAATGC | 1 cut(s) | 372 |
| MwoI | GCNNNNNNNGC | 3 cut(s) | 213, 1063, 1309 |
| NciI | CCSGG | 1 cut(s) | 270 |
| NcoI | CCATGG | 1 cut(s) | 123 |
| NdeII | GATC | 3 cut(s) | 545, 633, 919 |
| NlaIII | CATG | 9 cut(s) | 127, 140, 308, 338, 384, 594, 621, 953, 1057 |
| NlaIV | GGNNCC | 3 cut(s) | 351, 408, 736 |
| NmuCI | GTSAC | 2 cut(s) | 551, 673 |
| NsiI | ATGCAT | 2 cut(s) | 382, 1147 |
| NspI | RCATGY | 4 cut(s) | 384, 594, 953, 1057 |
| OliI | CACNNNNGTG | 1 cut(s) | 1158 |
| PaeR7I | CTCGAG | 1 cut(s) | 961 |
| PaqCI | CACCTGC | 1 cut(s) | 713 |
| PciI | ACATGT | 1 cut(s) | 949 |
| PctI | GAATGC | 1 cut(s) | 372 |
| PdmI | GAANNNNTTC | 1 cut(s) | 489 |
| PfeI | GAWTC | 2 cut(s) | 181, 277 |
| Ppu21I | YACGTR | 2 cut(s) | 146, 991 |
| PscI | ACATGT | 1 cut(s) | 949 |
| PsiI | TTATAA | 1 cut(s) | 1281 |
| PspN4I | GGNNCC | 3 cut(s) | 351, 408, 736 |
| PsuI | RGATCY | 2 cut(s) | 545, 919 |
| RsaI | GTAC | 4 cut(s) | 267, 574, 989, 1225 |
| RsaNI | GTAC | 4 cut(s) | 266, 573, 988, 1224 |
| RseI | CAYNNNNRTG | 2 cut(s) | 444, 1158 |
| SaqAI | TTAA | 3 cut(s) | 459, 810, 1320 |
| Sau3AI | GATC | 3 cut(s) | 545, 633, 919 |
| ScaI | AGTACT | 1 cut(s) | 1225 |
| ScrFI | CCNGG | 1 cut(s) | 270 |
| SduI | GDGCHC | 3 cut(s) | 145, 1006, 1165 |
| SfaNI | GCATC | 6 cut(s) | 367, 944, 1125, 1132, 1154, 1249 |
| Sfr274I | CTCGAG | 1 cut(s) | 961 |
| SlaI | CTCGAG | 1 cut(s) | 961 |
| SmiMI | CAYNNNNRTG | 2 cut(s) | 444, 1158 |
| SmlI | CTYRAG | 1 cut(s) | 961 |
| SmoI | CTYRAG | 1 cut(s) | 961 |
| SnaBI | TACGTA | 1 cut(s) | 991 |
| SpeI | ACTAGT | 1 cut(s) | 1157 |
| SsiI | CCGC | 2 cut(s) | 40, 1007 |
| SspMI | CTAG | 2 cut(s) | 794, 1158 |
| StyD4I | CCNGG | 1 cut(s) | 268 |
| StyI | CCWWGG | 1 cut(s) | 123 |
| TaaI | ACNGT | 4 cut(s) | 163, 557, 577, 1216 |
| TaiI | ACGT | 6 cut(s) | 148, 232, 472, 907, 993, 1201 |
| TaqI | TCGA | 5 cut(s) | 44, 113, 364, 962, 980 |
| TatI | WGTACW | 2 cut(s) | 572, 1223 |
| TfiI | GAWTC | 2 cut(s) | 181, 277 |
| Tru1I | TTAA | 3 cut(s) | 459, 810, 1320 |
| Tru9I | TTAA | 3 cut(s) | 459, 810, 1320 |
| TscAI | CASTG | 2 cut(s) | 349, 582 |
| TseFI | GTSAC | 2 cut(s) | 551, 673 |
| Tsp45I | GTSAC | 2 cut(s) | 551, 673 |
| TspDTI | ATGAA | 4 cut(s) | 290, 293, 498, 1058 |
| TspRI | CASTG | 2 cut(s) | 349, 582 |
| VneI | GTGCAC | 1 cut(s) | 1161 |
| XagI | CCTNNNNNAGG | 1 cut(s) | 742 |
| XapI | RAATTY | 3 cut(s) | 109, 149, 1093 |
| XceI | RCATGY | 4 cut(s) | 384, 594, 953, 1057 |
| XhoI | CTCGAG | 1 cut(s) | 961 |
| XmnI | GAANNNNTTC | 1 cut(s) | 489 |
| XspI | CTAG | 2 cut(s) | 794, 1158 |
| ZraI | GACGTC | 1 cut(s) | 470 |
| ZrmI | AGTACT | 1 cut(s) | 1225 |
| Zsp2I | ATGCAT | 2 cut(s) | 382, 1147 |