source UniProtKB
| Domain Name | Pfam ID | Position | E-value | Description |
|---|---|---|---|---|
| zf-RING_2 | PF13639 | 153 - 196 | 2e-13 | Ring finger domain |
| zf-RING_11 | PF17123 | 153 - 182 | 1.1e-09 | RING-like zinc finger |
| zf-C3HC4_2 | PF13923 | 153 - 195 | 4e-08 | Zinc finger, C3HC4 type (RING finger) |
| zf-C3HC4 | PF00097 | 154 - 195 | 2.3e-06 | Zinc finger, C3HC4 type (RING finger) |
| zf-rbx1 | PF12678 | 166 - 196 | 5.4e-08 | RING-H2 zinc finger domain |
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| Enzyme | Recognition Site | Cut Count | Positions (bp) |
|---|---|---|---|
| AarI | CACCTGC | 1 cut(s) | 581 |
| AasI | GACNNNNNNGTC | 2 cut(s) | 395, 1050 |
| AatII | GACGTC | 1 cut(s) | 684 |
| Acc36I | ACCTGC | 2 cut(s) | 581, 1179 |
| Acc65I | GGTACC | 1 cut(s) | 1075 |
| AccB1I | GGYRCC | 2 cut(s) | 729, 1075 |
| AccBSI | CCGCTC | 1 cut(s) | 580 |
| AccI | GTMKAC | 2 cut(s) | 546, 597 |
| AccII | CGCG | 3 cut(s) | 306, 720, 842 |
| AccIII | TCCGGA | 4 cut(s) | 344, 380, 792, 822 |
| AcoI | YGGCCR | 3 cut(s) | 228, 843, 1404 |
| AcvI | CACGTG | 1 cut(s) | 552 |
| AcyI | GRCGYC | 4 cut(s) | 561, 627, 681, 730 |
| AfaI | GTAC | 5 cut(s) | 177, 990, 1077, 1326, 1339 |
| AfiI | CCNNNNNNNGG | 7 cut(s) | 134, 356, 592, 724, 822, 1018, 1072 |
| AflIII | ACRYGT | 2 cut(s) | 549, 1049 |
| AhdI | GACNNNNNGTC | 1 cut(s) | 781 |
| AjiI | CACGTC | 2 cut(s) | 535, 1052 |
| AjnI | CCWGG | 3 cut(s) | 815, 1065, 1283 |
| AluBI | AGCT | 5 cut(s) | 312, 810, 1109, 1270, 1322 |
| AluI | AGCT | 5 cut(s) | 312, 810, 1109, 1270, 1322 |
| Alw21I | GWGCWC | 1 cut(s) | 918 |
| Alw26I | GTCTC | 2 cut(s) | 371, 934 |
| Ama87I | CYCGRG | 1 cut(s) | 706 |
| Aor13HI | TCCGGA | 4 cut(s) | 344, 380, 792, 822 |
| AoxI | GGCC | 9 cut(s) | 218, 228, 393, 451, 843, 880, 1098, 1328, 1404 |
| ApeKI | GCWGC | 4 cut(s) | 6, 309, 751, 1249 |
| ArsI | GACNNNNNNTTYG | 2 cut(s) | 450, 482 |
| Asp718I | GGTACC | 1 cut(s) | 1075 |
| AspLEI | GCGC | 4 cut(s) | 306, 464, 732, 1086 |
| AspS9I | GGNCC | 8 cut(s) | 219, 347, 393, 496, 798, 813, 1063, 1098 |
| AsuHPI | GGTGA | 3 cut(s) | 67, 153, 466 |
| AsuII | TTCGAA | 1 cut(s) | 1196 |
| AvaI | CYCGRG | 1 cut(s) | 706 |
| AvaII | GGWCC | 5 cut(s) | 347, 496, 798, 813, 1063 |
| BalI | TGGCCA | 2 cut(s) | 230, 1406 |
| BanI | GGYRCC | 2 cut(s) | 729, 1075 |
| BanII | GRGCYC | 1 cut(s) | 489 |
| BbrPI | CACGTG | 1 cut(s) | 552 |
| BbsI | GAAGAC | 2 cut(s) | 612, 630 |
| Bbv12I | GWGCWC | 1 cut(s) | 918 |
| BbvI | GCAGC | 3 cut(s) | 321, 763, 1261 |
| BccI | CCATC | 3 cut(s) | 239, 972, 1251 |
| BceAI | ACGGC | 7 cut(s) | 380, 449, 466, 895, 979, 1085, 1343 |
| BcgI | CGANNNNNNTGC | 2 cut(s) | 298, 332 |
| BciT130I | CCWGG | 3 cut(s) | 817, 1067, 1285 |
| BciVI | GTATCC | 1 cut(s) | 1291 |
| BclI | TGATCA | 1 cut(s) | 1026 |
| BcoDI | GTCTC | 2 cut(s) | 371, 934 |
| BfoI | RGCGCY | 1 cut(s) | 733 |
| BfuAI | ACCTGC | 2 cut(s) | 581, 1179 |
| BfuI | GTATCC | 1 cut(s) | 1291 |
| Bme18I | GGWCC | 5 cut(s) | 347, 496, 798, 813, 1063 |
| BmeRI | GACNNNNNGTC | 1 cut(s) | 781 |
| BmeT110I | CYCGRG | 1 cut(s) | 706 |
| BmgBI | CACGTC | 2 cut(s) | 535, 1052 |
| BmgT120I | GGNCC | 8 cut(s) | 219, 347, 393, 496, 798, 813, 1063, 1098 |
| BmiI | GGNNCC | 8 cut(s) | 331, 731, 763, 800, 821, 968, 1077, 1099 |
| BmrI | ACTGGG | 1 cut(s) | 1303 |
| BmuI | ACTGGG | 1 cut(s) | 1303 |
| BpiI | GAAGAC | 2 cut(s) | 612, 630 |
| BpmI | CTGGAG | 1 cut(s) | 932 |
| Bpu10I | CCTNAGC | 1 cut(s) | 1271 |
| Bpu14I | TTCGAA | 1 cut(s) | 1196 |
| BpuEI | CTTGAG | 1 cut(s) | 11 |
| BsaAI | YACGTR | 1 cut(s) | 552 |
| BsaHI | GRCGYC | 4 cut(s) | 561, 627, 681, 730 |
| BsaI | GGTCTC | 1 cut(s) | 371 |
| BsaJI | CCNNGG | 6 cut(s) | 357, 436, 492, 706, 744, 840 |
| BsaWI | WCCGGW | 5 cut(s) | 344, 380, 420, 792, 822 |
| BsaXI | ACNNNNNCTCC | 6 cut(s) | 551, 581, 1064, 1094, 1120, 1150 |
| Bsc4I | CCNNNNNNNGG | 7 cut(s) | 134, 356, 592, 724, 822, 1018, 1072 |
| Bse118I | RCCGGY | 1 cut(s) | 953 |
| Bse1I | ACTGG | 2 cut(s) | 1309, 1348 |
| Bse3DI | GCAATG | 2 cut(s) | 141, 1099 |
| BseAI | TCCGGA | 4 cut(s) | 344, 380, 792, 822 |
| BseBI | CCWGG | 3 cut(s) | 817, 1067, 1285 |
| BseDI | CCNNGG | 6 cut(s) | 357, 436, 492, 706, 744, 840 |
| BseGI | GGATG | 1 cut(s) | 609 |
| BseLI | CCNNNNNNNGG | 7 cut(s) | 134, 356, 592, 724, 822, 1018, 1072 |
| BseMI | GCAATG | 2 cut(s) | 141, 1099 |
| BseMII | CTCAG | 1 cut(s) | 1285 |
| BseNI | ACTGG | 2 cut(s) | 1309, 1348 |
| BseX3I | CGGCCG | 1 cut(s) | 843 |
| BseXI | GCAGC | 3 cut(s) | 321, 763, 1261 |
| BseYI | CCCAGC | 3 cut(s) | 221, 1109, 1318 |
| BsgI | GTGCAG | 1 cut(s) | 623 |
| Bsh1236I | CGCG | 3 cut(s) | 306, 720, 842 |
| Bsh1285I | CGRYCG | 2 cut(s) | 391, 846 |
| BshFI | GGCC | 9 cut(s) | 220, 230, 395, 453, 845, 882, 1100, 1330, 1406 |
| BshNI | GGYRCC | 2 cut(s) | 729, 1075 |
| BsiEI | CGRYCG | 2 cut(s) | 391, 846 |
| BsiHKAI | GWGCWC | 1 cut(s) | 918 |
| BsiHKCI | CYCGRG | 1 cut(s) | 706 |
| BslFI | GGGAC | 4 cut(s) | 391, 453, 784, 1291 |
| BslI | CCNNNNNNNGG | 7 cut(s) | 134, 356, 592, 724, 822, 1018, 1072 |
| BsmAI | GTCTC | 2 cut(s) | 371, 934 |
| BsmBI | CGTCTC | 1 cut(s) | 934 |
| BsmFI | GGGAC | 4 cut(s) | 391, 453, 784, 1291 |
| BsmI | GAATGC | 1 cut(s) | 464 |
| BsnI | GGCC | 9 cut(s) | 220, 230, 395, 453, 845, 882, 1100, 1330, 1406 |
| Bso31I | GGTCTC | 1 cut(s) | 371 |
| BsoBI | CYCGRG | 1 cut(s) | 706 |
| Bsp119I | TTCGAA | 1 cut(s) | 1196 |
| Bsp1286I | GDGCHC | 2 cut(s) | 489, 918 |
| Bsp13I | TCCGGA | 4 cut(s) | 344, 380, 792, 822 |
| Bsp143I | GATC | 4 cut(s) | 941, 1000, 1026, 1333 |
| BspANI | GGCC | 9 cut(s) | 220, 230, 395, 453, 845, 882, 1100, 1330, 1406 |
| BspCNI | CTCAG | 1 cut(s) | 1284 |
| BspEI | TCCGGA | 4 cut(s) | 344, 380, 792, 822 |
| BspFNI | CGCG | 3 cut(s) | 306, 720, 842 |
| BspLI | GGNNCC | 8 cut(s) | 331, 731, 763, 800, 821, 968, 1077, 1099 |
| BspMI | ACCTGC | 2 cut(s) | 581, 1179 |
| BspT104I | TTCGAA | 1 cut(s) | 1196 |
| BspT107I | GGYRCC | 2 cut(s) | 729, 1075 |
| BspTNI | GGTCTC | 1 cut(s) | 371 |
| BsrBI | CCGCTC | 1 cut(s) | 580 |
| BsrDI | GCAATG | 2 cut(s) | 141, 1099 |
| BsrFI | RCCGGY | 1 cut(s) | 953 |
| BsrI | ACTGG | 2 cut(s) | 1309, 1348 |
| BssAI | RCCGGY | 1 cut(s) | 953 |
| BssECI | CCNNGG | 6 cut(s) | 357, 436, 492, 706, 744, 840 |
| BssMI | GATC | 4 cut(s) | 941, 1000, 1026, 1333 |
| BssNI | GRCGYC | 4 cut(s) | 561, 627, 681, 730 |
| BssT1I | CCWWGG | 1 cut(s) | 744 |
| Bst2UI | CCWGG | 3 cut(s) | 817, 1067, 1285 |
| Bst4CI | ACNGT | 2 cut(s) | 1080, 1402 |
| Bst6I | CTCTTC | 1 cut(s) | 91 |
| BstACI | GRCGYC | 4 cut(s) | 561, 627, 681, 730 |
| BstBAI | YACGTR | 1 cut(s) | 552 |
| BstBI | TTCGAA | 1 cut(s) | 1196 |
| BstC8I | GCNNGC | 5 cut(s) | 302, 521, 525, 578, 656 |
| BstDEI | CTNAG | 1 cut(s) | 1271 |
| BstDSI | CCRYGG | 1 cut(s) | 840 |
| BstF5I | GGATG | 1 cut(s) | 609 |
| BstFNI | CGCG | 3 cut(s) | 306, 720, 842 |
| BstH2I | RGCGCY | 1 cut(s) | 733 |
| BstHHI | GCGC | 4 cut(s) | 306, 464, 732, 1086 |
| BstKTI | GATC | 4 cut(s) | 944, 1003, 1029, 1336 |
| BstMAI | GTCTC | 2 cut(s) | 371, 934 |
| BstMBI | GATC | 4 cut(s) | 941, 1000, 1026, 1333 |
| BstMCI | CGRYCG | 2 cut(s) | 391, 846 |
| BstMWI | GCNNNNNNNGC | 9 cut(s) | 53, 301, 306, 459, 468, 582, 848, 954, 1106 |
| BstNI | CCWGG | 3 cut(s) | 817, 1067, 1285 |
| BstUI | CGCG | 3 cut(s) | 306, 720, 842 |
| BstV1I | GCAGC | 3 cut(s) | 321, 763, 1261 |
| BstV2I | GAAGAC | 2 cut(s) | 612, 630 |
| BstZI | CGGCCG | 1 cut(s) | 843 |
| BsuI | GTATCC | 1 cut(s) | 1291 |
| BsuRI | GGCC | 9 cut(s) | 220, 230, 395, 453, 845, 882, 1100, 1330, 1406 |
| BtgI | CCRYGG | 1 cut(s) | 840 |
| BtrI | CACGTC | 2 cut(s) | 535, 1052 |
| BtsCI | GGATG | 1 cut(s) | 609 |
| BtsI | GCAGTG | 3 cut(s) | 295, 1141, 1407 |
| BtsIMutI | CAGTG | 5 cut(s) | 295, 1141, 1341, 1398, 1407 |
| BveI | ACCTGC | 2 cut(s) | 581, 1179 |
| Cac8I | GCNNGC | 5 cut(s) | 302, 521, 525, 578, 656 |
| CciNI | GCGGCCGC | 1 cut(s) | 843 |
| CfoI | GCGC | 4 cut(s) | 306, 464, 732, 1086 |
| Cfr10I | RCCGGY | 1 cut(s) | 953 |
| Cfr13I | GGNCC | 8 cut(s) | 219, 347, 393, 496, 798, 813, 1063, 1098 |
| Cfr42I | CCGCGG | 1 cut(s) | 843 |
| Cfr9I | CCCGGG | 1 cut(s) | 706 |
| CseI | GACGC | 3 cut(s) | 532, 569, 635 |
| CsiI | ACCWGGT | 1 cut(s) | 815 |
| Csp6I | GTAC | 5 cut(s) | 176, 989, 1076, 1325, 1338 |
| CviAII | CATG | 2 cut(s) | 226, 235 |
| CviQI | GTAC | 5 cut(s) | 176, 989, 1076, 1325, 1338 |
| DdeI | CTNAG | 1 cut(s) | 1271 |
| DinI | GGCGCC | 1 cut(s) | 731 |
| DpnI | GATC | 4 cut(s) | 943, 1002, 1028, 1335 |
| DpnII | GATC | 4 cut(s) | 941, 1000, 1026, 1333 |
| DrdI | GACNNNNNNGTC | 2 cut(s) | 395, 1050 |
| DriI | GACNNNNNGTC | 1 cut(s) | 781 |
| DseDI | GACNNNNNNGTC | 2 cut(s) | 395, 1050 |
| EaeI | YGGCCR | 3 cut(s) | 228, 843, 1404 |
| EagI | CGGCCG | 1 cut(s) | 843 |
| Eam1104I | CTCTTC | 1 cut(s) | 91 |
| Eam1105I | GACNNNNNGTC | 1 cut(s) | 781 |
| EarI | CTCTTC | 1 cut(s) | 91 |
| EciI | GGCGGA | 3 cut(s) | 491, 704, 730 |
| EclXI | CGGCCG | 1 cut(s) | 843 |
| Eco130I | CCWWGG | 1 cut(s) | 744 |
| Eco24I | GRGCYC | 1 cut(s) | 489 |
| Eco31I | GGTCTC | 1 cut(s) | 371 |
| Eco47I | GGWCC | 5 cut(s) | 347, 496, 798, 813, 1063 |
| Eco52I | CGGCCG | 1 cut(s) | 843 |
| Eco72I | CACGTG | 1 cut(s) | 552 |
| Eco88I | CYCGRG | 1 cut(s) | 706 |
| EcoO109I | RGGNCCY | 2 cut(s) | 496, 798 |
| EcoRII | CCWGG | 3 cut(s) | 815, 1065, 1283 |
| EcoT14I | CCWWGG | 1 cut(s) | 744 |
| EcoT38I | GRGCYC | 1 cut(s) | 489 |
| EgeI | GGCGCC | 1 cut(s) | 731 |
| EheI | GGCGCC | 1 cut(s) | 731 |
| ErhI | CCWWGG | 1 cut(s) | 744 |
| Esp3I | CGTCTC | 1 cut(s) | 934 |
| FaeI | CATG | 2 cut(s) | 229, 238 |
| FaiI | YATR | 3 cut(s) | 227, 236, 1031 |
| FalI | AAGNNNNNCTT | 2 cut(s) | 512, 544 |
| FaqI | GGGAC | 4 cut(s) | 391, 453, 784, 1291 |
| FatI | CATG | 2 cut(s) | 225, 234 |
| FauI | CCCGC | 4 cut(s) | 355, 361, 585, 847 |
| FbaI | TGATCA | 1 cut(s) | 1026 |
| FblI | GTMKAC | 2 cut(s) | 546, 597 |
| FokI | GGATG | 1 cut(s) | 596 |
| FriOI | GRGCYC | 1 cut(s) | 489 |
| GlaI | GCGC | 4 cut(s) | 305, 463, 731, 1085 |
| GsaI | CCCAGC | 3 cut(s) | 225, 1113, 1322 |
| GsuI | CTGGAG | 1 cut(s) | 932 |
| HaeII | RGCGCY | 1 cut(s) | 733 |
| HaeIII | GGCC | 9 cut(s) | 220, 230, 395, 453, 845, 882, 1100, 1330, 1406 |
| HgaI | GACGC | 3 cut(s) | 532, 569, 635 |
| HhaI | GCGC | 4 cut(s) | 306, 464, 732, 1086 |
| Hin1I | GRCGYC | 4 cut(s) | 561, 627, 681, 730 |
| Hin1II | CATG | 2 cut(s) | 229, 238 |
| Hin6I | GCGC | 4 cut(s) | 304, 462, 730, 1084 |
| HinP1I | GCGC | 4 cut(s) | 304, 462, 730, 1084 |
| HincII | GTYRAC | 2 cut(s) | 547, 598 |
| HindII | GTYRAC | 2 cut(s) | 547, 598 |
| HinfI | GANTC | 8 cut(s) | 253, 341, 384, 404, 633, 664, 711, 921 |
| HphI | GGTGA | 3 cut(s) | 67, 153, 466 |
| Hpy166II | GTNNAC | 3 cut(s) | 190, 547, 598 |
| Hpy188I | TCNGA | 7 cut(s) | 242, 249, 326, 870, 1000, 1021, 1171 |
| Hpy188III | TCNNGA | 6 cut(s) | 345, 381, 511, 773, 793, 823 |
| Hpy8I | GTNNAC | 3 cut(s) | 190, 547, 598 |
| HpyAV | CCTTC | 5 cut(s) | 20, 67, 274, 538, 1022 |
| HpyCH4III | ACNGT | 2 cut(s) | 1080, 1402 |
| HpyCH4IV | ACGT | 9 cut(s) | 152, 269, 534, 551, 681, 782, 865, 987, 1051 |
| HpyCH4V | TGCA | 3 cut(s) | 300, 519, 640 |
| HpyF10VI | GCNNNNNNNGC | 9 cut(s) | 53, 301, 306, 459, 468, 582, 848, 954, 1106 |
| HpyF3I | CTNAG | 1 cut(s) | 1271 |
| HpySE526I | ACGT | 9 cut(s) | 152, 269, 534, 551, 681, 782, 865, 987, 1051 |
| Hsp92I | GRCGYC | 4 cut(s) | 561, 627, 681, 730 |
| Hsp92II | CATG | 2 cut(s) | 229, 238 |
| HspAI | GCGC | 4 cut(s) | 304, 462, 730, 1084 |
| KasI | GGCGCC | 1 cut(s) | 729 |
| Kpn2I | TCCGGA | 4 cut(s) | 344, 380, 792, 822 |
| KpnI | GGTACC | 1 cut(s) | 1079 |
| Ksp22I | TGATCA | 1 cut(s) | 1026 |
| KspI | CCGCGG | 1 cut(s) | 843 |
| Kzo9I | GATC | 4 cut(s) | 941, 1000, 1026, 1333 |
| LmnI | GCTCC | 7 cut(s) | 438, 748, 767, 913, 981, 1206, 1221 |
| Lsp1109I | GCAGC | 3 cut(s) | 321, 763, 1261 |
| MabI | ACCWGGT | 1 cut(s) | 815 |
| MaeII | ACGT | 9 cut(s) | 152, 269, 534, 551, 681, 782, 865, 987, 1051 |
| MaeIII | GTNAC | 2 cut(s) | 1253, 1311 |
| MalI | GATC | 4 cut(s) | 943, 1002, 1028, 1335 |
| MbiI | CCGCTC | 1 cut(s) | 580 |
| MboI | GATC | 4 cut(s) | 941, 1000, 1026, 1333 |
| MboII | GAAGA | 8 cut(s) | 52, 59, 78, 266, 617, 635, 995, 1344 |
| MhlI | GDGCHC | 2 cut(s) | 489, 918 |
| MlsI | TGGCCA | 2 cut(s) | 230, 1406 |
| MluNI | TGGCCA | 2 cut(s) | 230, 1406 |
| Mly113I | GGCGCC | 1 cut(s) | 730 |
| MlyI | GAGTC | 4 cut(s) | 247, 335, 413, 658 |
| MmeI | TCCRAC | 2 cut(s) | 220, 1149 |
| Mox20I | TGGCCA | 2 cut(s) | 230, 1406 |
| MroI | TCCGGA | 4 cut(s) | 344, 380, 792, 822 |
| MscI | TGGCCA | 2 cut(s) | 230, 1406 |
| MseI | TTAA | 2 cut(s) | 180, 890 |
| Msp20I | TGGCCA | 2 cut(s) | 230, 1406 |
| MspA1I | CMGCKG | 4 cut(s) | 810, 842, 1109, 1322 |
| Mva1269I | GAATGC | 1 cut(s) | 464 |
| MvaI | CCWGG | 3 cut(s) | 817, 1067, 1285 |
| MvnI | CGCG | 3 cut(s) | 306, 720, 842 |
| MwoI | GCNNNNNNNGC | 9 cut(s) | 53, 301, 306, 459, 468, 582, 848, 954, 1106 |
| NarI | GGCGCC | 1 cut(s) | 730 |
| NdeII | GATC | 4 cut(s) | 941, 1000, 1026, 1333 |
| NlaIII | CATG | 2 cut(s) | 229, 238 |
| NlaIV | GGNNCC | 8 cut(s) | 331, 731, 763, 800, 821, 968, 1077, 1099 |
| NmeAIII | GCCGAG | 1 cut(s) | 223 |
| NmuCI | GTSAC | 1 cut(s) | 1311 |
| NotI | GCGGCCGC | 1 cut(s) | 843 |
| NspV | TTCGAA | 1 cut(s) | 1196 |
| PaqCI | CACCTGC | 1 cut(s) | 581 |
| PcsI | WCGNNNNNNNCGW | 8 cut(s) | 393, 462, 489, 531, 540, 543, 1161, 1333 |
| PctI | GAATGC | 1 cut(s) | 464 |
| PfeI | GAWTC | 4 cut(s) | 384, 633, 711, 921 |
| PflFI | GACNNNGTC | 1 cut(s) | 683 |
| PleI | GAGTC | 4 cut(s) | 247, 335, 412, 658 |
| PluTI | GGCGCC | 1 cut(s) | 733 |
| PmaCI | CACGTG | 1 cut(s) | 552 |
| PmlI | CACGTG | 1 cut(s) | 552 |
| PpsI | GAGTC | 4 cut(s) | 247, 335, 412, 658 |
| Ppu21I | YACGTR | 1 cut(s) | 552 |
| PpuMI | RGGWCCY | 2 cut(s) | 496, 798 |
| Psp5II | RGGWCCY | 2 cut(s) | 496, 798 |
| Psp6I | CCWGG | 3 cut(s) | 815, 1065, 1283 |
| PspCI | CACGTG | 1 cut(s) | 552 |
| PspFI | CCCAGC | 3 cut(s) | 221, 1109, 1318 |
| PspGI | CCWGG | 3 cut(s) | 815, 1065, 1283 |
| PspN4I | GGNNCC | 8 cut(s) | 331, 731, 763, 800, 821, 968, 1077, 1099 |
| PspPI | GGNCC | 8 cut(s) | 219, 347, 393, 496, 798, 813, 1063, 1098 |
| PspPPI | RGGWCCY | 2 cut(s) | 496, 798 |
| PsyI | GACNNNGTC | 1 cut(s) | 683 |
| PvuII | CAGCTG | 3 cut(s) | 810, 1109, 1322 |
| RsaI | GTAC | 5 cut(s) | 177, 990, 1077, 1326, 1339 |
| RsaNI | GTAC | 5 cut(s) | 176, 989, 1076, 1325, 1338 |
| SacII | CCGCGG | 1 cut(s) | 843 |
| SalI | GTCGAC | 2 cut(s) | 545, 596 |
| SaqAI | TTAA | 2 cut(s) | 180, 890 |
| Sau3AI | GATC | 4 cut(s) | 941, 1000, 1026, 1333 |
| Sau96I | GGNCC | 8 cut(s) | 219, 347, 393, 496, 798, 813, 1063, 1098 |
| SchI | GAGTC | 4 cut(s) | 247, 335, 413, 658 |
| SduI | GDGCHC | 2 cut(s) | 489, 918 |
| SexAI | ACCWGGT | 1 cut(s) | 815 |
| SfoI | GGCGCC | 1 cut(s) | 731 |
| Sfr303I | CCGCGG | 1 cut(s) | 843 |
| SfuI | TTCGAA | 1 cut(s) | 1196 |
| SgrAI | CRCCGGYG | 1 cut(s) | 953 |
| SgrBI | CCGCGG | 1 cut(s) | 843 |
| SinI | GGWCC | 5 cut(s) | 347, 496, 798, 813, 1063 |
| SmaI | CCCGGG | 1 cut(s) | 708 |
| SmlI | CTYRAG | 1 cut(s) | 26 |
| SmoI | CTYRAG | 1 cut(s) | 26 |
| SspDI | GGCGCC | 1 cut(s) | 729 |
| StyI | CCWWGG | 1 cut(s) | 744 |
| TaaI | ACNGT | 2 cut(s) | 1080, 1402 |
| TaiI | ACGT | 9 cut(s) | 155, 272, 537, 554, 684, 785, 868, 990, 1054 |
| TatI | WGTACW | 1 cut(s) | 175 |
| TfiI | GAWTC | 4 cut(s) | 384, 633, 711, 921 |
| Tru1I | TTAA | 2 cut(s) | 180, 890 |
| Tru9I | TTAA | 2 cut(s) | 180, 890 |
| TscAI | CASTG | 5 cut(s) | 302, 1141, 1348, 1405, 1414 |
| TseFI | GTSAC | 1 cut(s) | 1311 |
| TseI | GCWGC | 4 cut(s) | 6, 309, 751, 1249 |
| Tsp45I | GTSAC | 1 cut(s) | 1311 |
| TspGWI | ACGGA | 2 cut(s) | 359, 1056 |
| TspMI | CCCGGG | 1 cut(s) | 706 |
| TspRI | CASTG | 5 cut(s) | 302, 1141, 1348, 1405, 1414 |
| Tth111I | GACNNNGTC | 1 cut(s) | 683 |
| VpaK11BI | GGWCC | 5 cut(s) | 347, 496, 798, 813, 1063 |
| XmaI | CCCGGG | 1 cut(s) | 706 |
| XmiI | GTMKAC | 2 cut(s) | 546, 597 |
| ZraI | GACGTC | 1 cut(s) | 682 |