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| Enzyme | Recognition Site | Cut Count | Positions (bp) |
|---|---|---|---|
| AarI | CACCTGC | 1 cut(s) | 169 |
| Acc36I | ACCTGC | 1 cut(s) | 169 |
| AccB1I | GGYRCC | 1 cut(s) | 124 |
| AcuI | CTGAAG | 1 cut(s) | 237 |
| AfaI | GTAC | 1 cut(s) | 111 |
| AfiI | CCNNNNNNNGG | 2 cut(s) | 134, 384 |
| AgsI | TTSAA | 4 cut(s) | 253, 280, 403, 485 |
| AjnI | CCWGG | 1 cut(s) | 55 |
| AluBI | AGCT | 2 cut(s) | 83, 221 |
| AluI | AGCT | 2 cut(s) | 83, 221 |
| AoxI | GGCC | 1 cut(s) | 289 |
| ApeKI | GCWGC | 3 cut(s) | 80, 240, 414 |
| ArsI | GACNNNNNNTTYG | 1 cut(s) | 460 |
| AsuC2I | CCSGG | 1 cut(s) | 135 |
| AsuHPI | GGTGA | 1 cut(s) | 478 |
| BanI | GGYRCC | 1 cut(s) | 124 |
| BauI | CACGAG | 1 cut(s) | 84 |
| BbvI | GCAGC | 3 cut(s) | 92, 227, 426 |
| BccI | CCATC | 1 cut(s) | 65 |
| BciT130I | CCWGG | 1 cut(s) | 57 |
| BcnI | CCSGG | 1 cut(s) | 135 |
| BfaI | CTAG | 1 cut(s) | 222 |
| BfuAI | ACCTGC | 1 cut(s) | 169 |
| BglII | AGATCT | 1 cut(s) | 91 |
| BisI | GCNGC | 3 cut(s) | 81, 241, 415 |
| BlsI | GCNGC | 3 cut(s) | 82, 242, 416 |
| Bme1390I | CCNGG | 2 cut(s) | 57, 135 |
| BmiI | GGNNCC | 1 cut(s) | 126 |
| BmrFI | CCNGG | 2 cut(s) | 57, 135 |
| BmsI | GCATC | 4 cut(s) | 227, 258, 309, 433 |
| BpuMI | CCSGG | 1 cut(s) | 135 |
| BsaJI | CCNNGG | 2 cut(s) | 55, 134 |
| Bsc4I | CCNNNNNNNGG | 2 cut(s) | 134, 384 |
| Bse3DI | GCAATG | 2 cut(s) | 41, 453 |
| BseBI | CCWGG | 1 cut(s) | 57 |
| BseDI | CCNNGG | 2 cut(s) | 55, 134 |
| BseGI | GGATG | 3 cut(s) | 76, 242, 448 |
| BseLI | CCNNNNNNNGG | 2 cut(s) | 134, 384 |
| BseMI | GCAATG | 2 cut(s) | 41, 453 |
| BseXI | GCAGC | 3 cut(s) | 92, 227, 426 |
| BseYI | CCCAGC | 1 cut(s) | 116 |
| BsgI | GTGCAG | 1 cut(s) | 433 |
| BshFI | GGCC | 1 cut(s) | 291 |
| BshNI | GGYRCC | 1 cut(s) | 124 |
| BsiSI | CCGG | 1 cut(s) | 134 |
| BslI | CCNNNNNNNGG | 2 cut(s) | 134, 384 |
| BsnI | GGCC | 1 cut(s) | 291 |
| Bsp143I | GATC | 1 cut(s) | 91 |
| BspANI | GGCC | 1 cut(s) | 291 |
| BspHI | TCATGA | 1 cut(s) | 301 |
| BspLI | GGNNCC | 1 cut(s) | 126 |
| BspMI | ACCTGC | 1 cut(s) | 169 |
| BspT107I | GGYRCC | 1 cut(s) | 124 |
| BsrDI | GCAATG | 2 cut(s) | 41, 453 |
| BssECI | CCNNGG | 2 cut(s) | 55, 134 |
| BssMI | GATC | 1 cut(s) | 91 |
| BssSI | CACGAG | 1 cut(s) | 84 |
| Bst2BI | CACGAG | 1 cut(s) | 84 |
| Bst2UI | CCWGG | 1 cut(s) | 57 |
| Bst4CI | ACNGT | 1 cut(s) | 308 |
| Bst6I | CTCTTC | 1 cut(s) | 401 |
| BstAPI | GCANNNNNTGC | 1 cut(s) | 347 |
| BstDEI | CTNAG | 2 cut(s) | 180, 286 |
| BstF5I | GGATG | 3 cut(s) | 76, 242, 448 |
| BstKTI | GATC | 1 cut(s) | 94 |
| BstMBI | GATC | 1 cut(s) | 91 |
| BstMWI | GCNNNNNNNGC | 3 cut(s) | 122, 227, 347 |
| BstNI | CCWGG | 1 cut(s) | 57 |
| BstSCI | CCNGG | 2 cut(s) | 55, 133 |
| BstV1I | GCAGC | 3 cut(s) | 92, 227, 426 |
| BstX2I | RGATCY | 1 cut(s) | 91 |
| BstYI | RGATCY | 1 cut(s) | 91 |
| BsuRI | GGCC | 1 cut(s) | 291 |
| BtsCI | GGATG | 3 cut(s) | 76, 242, 448 |
| BveI | ACCTGC | 1 cut(s) | 169 |
| CciI | TCATGA | 1 cut(s) | 301 |
| Csp6I | GTAC | 1 cut(s) | 110 |
| CviAII | CATG | 2 cut(s) | 302, 365 |
| CviJI | RGCY | 6 cut(s) | 83, 116, 149, 215, 221, 291 |
| CviKI_1 | RGCY | 6 cut(s) | 83, 116, 149, 215, 221, 291 |
| CviQI | GTAC | 1 cut(s) | 110 |
| DdeI | CTNAG | 2 cut(s) | 180, 286 |
| DpnI | GATC | 1 cut(s) | 93 |
| DpnII | GATC | 1 cut(s) | 91 |
| Eam1104I | CTCTTC | 1 cut(s) | 401 |
| EarI | CTCTTC | 1 cut(s) | 401 |
| Eco147I | AGGCCT | 1 cut(s) | 291 |
| Eco32I | GATATC | 1 cut(s) | 430 |
| Eco57I | CTGAAG | 1 cut(s) | 237 |
| EcoRII | CCWGG | 1 cut(s) | 55 |
| EcoRV | GATATC | 1 cut(s) | 430 |
| EcoT22I | ATGCAT | 1 cut(s) | 6 |
| FaeI | CATG | 2 cut(s) | 305, 368 |
| FaiI | YATR | 9 cut(s) | 6, 8, 22, 171, 303, 312, 314, 366, 375 |
| FalI | AAGNNNNNCTT | 2 cut(s) | 133, 165 |
| FatI | CATG | 2 cut(s) | 301, 364 |
| FauNDI | CATATG | 1 cut(s) | 312 |
| Fnu4HI | GCNGC | 3 cut(s) | 81, 241, 415 |
| FokI | GGATG | 3 cut(s) | 83, 249, 455 |
| Fsp4HI | GCNGC | 3 cut(s) | 81, 241, 415 |
| FspBI | CTAG | 1 cut(s) | 222 |
| GluI | GCNGC | 3 cut(s) | 81, 241, 415 |
| GsaI | CCCAGC | 1 cut(s) | 120 |
| HaeIII | GGCC | 1 cut(s) | 291 |
| HapII | CCGG | 1 cut(s) | 134 |
| Hin1II | CATG | 2 cut(s) | 305, 368 |
| HpaII | CCGG | 1 cut(s) | 134 |
| HphI | GGTGA | 1 cut(s) | 478 |
| Hpy166II | GTNNAC | 1 cut(s) | 110 |
| Hpy188III | TCNNGA | 2 cut(s) | 86, 302 |
| Hpy8I | GTNNAC | 1 cut(s) | 110 |
| HpyCH4III | ACNGT | 1 cut(s) | 308 |
| HpyCH4V | TGCA | 8 cut(s) | 4, 230, 271, 322, 341, 414, 446, 451 |
| HpyF10VI | GCNNNNNNNGC | 3 cut(s) | 122, 227, 347 |
| HpyF3I | CTNAG | 2 cut(s) | 180, 286 |
| Hsp92II | CATG | 2 cut(s) | 305, 368 |
| Kzo9I | GATC | 1 cut(s) | 91 |
| LmnI | GCTCC | 2 cut(s) | 169, 248 |
| LpnPI | CCDG | 6 cut(s) | 42, 69, 102, 147, 174, 348 |
| Lsp1109I | GCAGC | 3 cut(s) | 92, 227, 426 |
| LweI | GCATC | 4 cut(s) | 227, 258, 309, 433 |
| MaeI | CTAG | 1 cut(s) | 222 |
| MaeIII | GTNAC | 1 cut(s) | 466 |
| MalI | GATC | 1 cut(s) | 93 |
| MboI | GATC | 1 cut(s) | 91 |
| MboII | GAAGA | 4 cut(s) | 101, 146, 388, 391 |
| MflI | RGATCY | 1 cut(s) | 91 |
| MluCI | AATT | 5 cut(s) | 191, 247, 342, 437, 459 |
| MnlI | CCTC | 1 cut(s) | 404 |
| Mph1103I | ATGCAT | 1 cut(s) | 6 |
| MseI | TTAA | 1 cut(s) | 294 |
| MspI | CCGG | 1 cut(s) | 134 |
| MspR9I | CCNGG | 2 cut(s) | 57, 135 |
| MvaI | CCWGG | 1 cut(s) | 57 |
| MwoI | GCNNNNNNNGC | 3 cut(s) | 122, 227, 347 |
| NciI | CCSGG | 1 cut(s) | 135 |
| NdeI | CATATG | 1 cut(s) | 312 |
| NdeII | GATC | 1 cut(s) | 91 |
| NlaIII | CATG | 2 cut(s) | 305, 368 |
| NlaIV | GGNNCC | 1 cut(s) | 126 |
| NmuCI | GTSAC | 1 cut(s) | 466 |
| NsiI | ATGCAT | 1 cut(s) | 6 |
| PagI | TCATGA | 1 cut(s) | 301 |
| PaqCI | CACCTGC | 1 cut(s) | 169 |
| PceI | AGGCCT | 1 cut(s) | 291 |
| PkrI | GCNGC | 3 cut(s) | 82, 242, 416 |
| Psp6I | CCWGG | 1 cut(s) | 55 |
| PspFI | CCCAGC | 1 cut(s) | 116 |
| PspGI | CCWGG | 1 cut(s) | 55 |
| PspN4I | GGNNCC | 1 cut(s) | 126 |
| PsuI | RGATCY | 1 cut(s) | 91 |
| RsaI | GTAC | 1 cut(s) | 111 |
| RsaNI | GTAC | 1 cut(s) | 110 |
| SaqAI | TTAA | 1 cut(s) | 294 |
| SatI | GCNGC | 3 cut(s) | 81, 241, 415 |
| Sau3AI | GATC | 1 cut(s) | 91 |
| ScrFI | CCNGG | 2 cut(s) | 57, 135 |
| SetI | ASST | 7 cut(s) | 85, 130, 163, 223, 227, 261, 389 |
| SfaNI | GCATC | 4 cut(s) | 227, 258, 309, 433 |
| Sse9I | AATT | 5 cut(s) | 191, 247, 342, 437, 459 |
| SseBI | AGGCCT | 1 cut(s) | 291 |
| SspMI | CTAG | 1 cut(s) | 222 |
| StuI | AGGCCT | 1 cut(s) | 291 |
| StyD4I | CCNGG | 2 cut(s) | 55, 133 |
| TaaI | ACNGT | 1 cut(s) | 308 |
| TaqI | TCGA | 1 cut(s) | 266 |
| TasI | AATT | 5 cut(s) | 191, 247, 342, 437, 459 |
| Tru1I | TTAA | 1 cut(s) | 294 |
| Tru9I | TTAA | 1 cut(s) | 294 |
| TseFI | GTSAC | 1 cut(s) | 466 |
| TseI | GCWGC | 3 cut(s) | 80, 240, 414 |
| Tsp45I | GTSAC | 1 cut(s) | 466 |
| TspDTI | ATGAA | 1 cut(s) | 471 |
| XspI | CTAG | 1 cut(s) | 222 |
| Zsp2I | ATGCAT | 1 cut(s) | 6 |