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| Enzyme | Recognition Site | Cut Count | Positions (bp) |
|---|---|---|---|
| AasI | GACNNNNNNGTC | 1 cut(s) | 1445 |
| AccI | GTMKAC | 1 cut(s) | 31 |
| AciI | CCGC | 3 cut(s) | 555, 622, 1178 |
| AcsI | RAATTY | 2 cut(s) | 166, 1119 |
| AcuI | CTGAAG | 2 cut(s) | 690, 747 |
| AcvI | CACGTG | 1 cut(s) | 995 |
| AfaI | GTAC | 7 cut(s) | 40, 485, 516, 528, 686, 942, 1462 |
| AfiI | CCNNNNNNNGG | 4 cut(s) | 134, 135, 733, 912 |
| AflII | CTTAAG | 1 cut(s) | 907 |
| AgsI | TTSAA | 6 cut(s) | 227, 240, 732, 1162, 1295, 1410 |
| AjnI | CCWGG | 1 cut(s) | 55 |
| AluBI | AGCT | 7 cut(s) | 115, 158, 677, 809, 1356, 1478, 1508 |
| AluI | AGCT | 7 cut(s) | 115, 158, 677, 809, 1356, 1478, 1508 |
| Alw26I | GTCTC | 1 cut(s) | 1024 |
| AlwNI | CAGNNNCTG | 1 cut(s) | 788 |
| AoxI | GGCC | 1 cut(s) | 283 |
| ApeKI | GCWGC | 2 cut(s) | 80, 767 |
| ApoI | RAATTY | 2 cut(s) | 166, 1119 |
| ArsI | GACNNNNNNTTYG | 2 cut(s) | 686, 718 |
| Asp700I | GAANNNNTTC | 2 cut(s) | 324, 727 |
| AspS9I | GGNCC | 1 cut(s) | 557 |
| AsuHPI | GGTGA | 1 cut(s) | 838 |
| AsuII | TTCGAA | 1 cut(s) | 588 |
| AvaII | GGWCC | 1 cut(s) | 557 |
| BaeI | ACNNNNGTAYC | 2 cut(s) | 932, 965 |
| BbrPI | CACGTG | 1 cut(s) | 995 |
| BbsI | GAAGAC | 2 cut(s) | 68, 1302 |
| BbvI | GCAGC | 2 cut(s) | 92, 779 |
| BccI | CCATC | 5 cut(s) | 65, 567, 906, 1308, 1404 |
| BciT130I | CCWGG | 1 cut(s) | 57 |
| BciVI | GTATCC | 1 cut(s) | 591 |
| BclI | TGATCA | 1 cut(s) | 1249 |
| BcoDI | GTCTC | 1 cut(s) | 1024 |
| BfaI | CTAG | 1 cut(s) | 1311 |
| BfrI | CTTAAG | 1 cut(s) | 907 |
| BfuI | GTATCC | 1 cut(s) | 591 |
| BglII | AGATCT | 1 cut(s) | 91 |
| BisI | GCNGC | 2 cut(s) | 81, 768 |
| BlsI | GCNGC | 2 cut(s) | 82, 769 |
| BmcAI | AGTACT | 1 cut(s) | 686 |
| Bme1390I | CCNGG | 1 cut(s) | 57 |
| Bme18I | GGWCC | 1 cut(s) | 557 |
| BmgT120I | GGNCC | 1 cut(s) | 557 |
| BmrFI | CCNGG | 1 cut(s) | 57 |
| BmsI | GCATC | 1 cut(s) | 1038 |
| BpiI | GAAGAC | 2 cut(s) | 68, 1302 |
| BplI | GAGNNNNNCTC | 2 cut(s) | 674, 706 |
| Bpu14I | TTCGAA | 1 cut(s) | 588 |
| BpuEI | CTTGAG | 1 cut(s) | 497 |
| BsaAI | YACGTR | 1 cut(s) | 995 |
| BsaBI | GATNNNNATC | 1 cut(s) | 1395 |
| BsaJI | CCNNGG | 2 cut(s) | 56, 129 |
| Bsc4I | CCNNNNNNNGG | 4 cut(s) | 134, 135, 733, 912 |
| Bse1I | ACTGG | 1 cut(s) | 560 |
| Bse8I | GATNNNNATC | 1 cut(s) | 1395 |
| BseBI | CCWGG | 1 cut(s) | 57 |
| BseDI | CCNNGG | 2 cut(s) | 56, 129 |
| BseGI | GGATG | 6 cut(s) | 184, 427, 457, 582, 1204, 1396 |
| BseJI | GATNNNNATC | 1 cut(s) | 1395 |
| BseLI | CCNNNNNNNGG | 4 cut(s) | 134, 135, 733, 912 |
| BseNI | ACTGG | 1 cut(s) | 560 |
| BseXI | GCAGC | 2 cut(s) | 92, 779 |
| BshFI | GGCC | 1 cut(s) | 285 |
| BslI | CCNNNNNNNGG | 4 cut(s) | 134, 135, 733, 912 |
| BsmAI | GTCTC | 1 cut(s) | 1024 |
| BsnI | GGCC | 1 cut(s) | 285 |
| Bsp119I | TTCGAA | 1 cut(s) | 588 |
| Bsp1407I | TGTACA | 1 cut(s) | 526 |
| Bsp143I | GATC | 6 cut(s) | 91, 749, 963, 1007, 1249, 1339 |
| BspACI | CCGC | 3 cut(s) | 555, 622, 1178 |
| BspANI | GGCC | 1 cut(s) | 285 |
| BspT104I | TTCGAA | 1 cut(s) | 588 |
| BspTI | CTTAAG | 1 cut(s) | 907 |
| BsrGI | TGTACA | 1 cut(s) | 526 |
| BsrI | ACTGG | 1 cut(s) | 560 |
| BssECI | CCNNGG | 2 cut(s) | 56, 129 |
| BssMI | GATC | 6 cut(s) | 91, 749, 963, 1007, 1249, 1339 |
| BssNAI | GTATAC | 1 cut(s) | 32 |
| BssT1I | CCWWGG | 1 cut(s) | 129 |
| Bst1107I | GTATAC | 1 cut(s) | 32 |
| Bst2UI | CCWGG | 1 cut(s) | 57 |
| Bst4CI | ACNGT | 2 cut(s) | 820, 1022 |
| Bst6I | CTCTTC | 2 cut(s) | 179, 1365 |
| BstAFI | CTTAAG | 1 cut(s) | 907 |
| BstAPI | GCANNNNNTGC | 1 cut(s) | 322 |
| BstAUI | TGTACA | 1 cut(s) | 526 |
| BstBAI | YACGTR | 1 cut(s) | 995 |
| BstBI | TTCGAA | 1 cut(s) | 588 |
| BstC8I | GCNNGC | 1 cut(s) | 1476 |
| BstDEI | CTNAG | 2 cut(s) | 200, 1140 |
| BstF5I | GGATG | 6 cut(s) | 184, 427, 457, 582, 1204, 1396 |
| BstKTI | GATC | 6 cut(s) | 94, 752, 966, 1010, 1252, 1342 |
| BstMAI | GTCTC | 1 cut(s) | 1024 |
| BstMBI | GATC | 6 cut(s) | 91, 749, 963, 1007, 1249, 1339 |
| BstMWI | GCNNNNNNNGC | 3 cut(s) | 322, 674, 1271 |
| BstNI | CCWGG | 1 cut(s) | 57 |
| BstNSI | RCATGY | 1 cut(s) | 1096 |
| BstSCI | CCNGG | 1 cut(s) | 55 |
| BstV1I | GCAGC | 2 cut(s) | 92, 779 |
| BstV2I | GAAGAC | 2 cut(s) | 68, 1302 |
| BstX2I | RGATCY | 1 cut(s) | 91 |
| BstYI | RGATCY | 1 cut(s) | 91 |
| BstZ17I | GTATAC | 1 cut(s) | 32 |
| BsuI | GTATCC | 1 cut(s) | 591 |
| BsuRI | GGCC | 1 cut(s) | 285 |
| BtsCI | GGATG | 6 cut(s) | 184, 427, 457, 582, 1204, 1396 |
| BtsIMutI | CAGTG | 2 cut(s) | 816, 1027 |
| Cac8I | GCNNGC | 1 cut(s) | 1476 |
| CaiI | CAGNNNCTG | 1 cut(s) | 788 |
| Cfr13I | GGNCC | 1 cut(s) | 557 |
| Csp6I | GTAC | 7 cut(s) | 39, 484, 515, 527, 685, 941, 1461 |
| CviAII | CATG | 8 cut(s) | 103, 214, 881, 890, 953, 1093, 1271, 1471 |
| CviQI | GTAC | 7 cut(s) | 39, 484, 515, 527, 685, 941, 1461 |
| DdeI | CTNAG | 2 cut(s) | 200, 1140 |
| DpnI | GATC | 6 cut(s) | 93, 751, 965, 1009, 1251, 1341 |
| DpnII | GATC | 6 cut(s) | 91, 749, 963, 1007, 1249, 1339 |
| DraI | TTTAAA | 1 cut(s) | 123 |
| DrdI | GACNNNNNNGTC | 1 cut(s) | 1445 |
| DseDI | GACNNNNNNGTC | 1 cut(s) | 1445 |
| Eam1104I | CTCTTC | 2 cut(s) | 179, 1365 |
| EarI | CTCTTC | 2 cut(s) | 179, 1365 |
| Eco130I | CCWWGG | 1 cut(s) | 129 |
| Eco47I | GGWCC | 1 cut(s) | 557 |
| Eco57I | CTGAAG | 2 cut(s) | 690, 747 |
| Eco72I | CACGTG | 1 cut(s) | 995 |
| EcoRII | CCWGG | 1 cut(s) | 55 |
| EcoT14I | CCWWGG | 1 cut(s) | 129 |
| EcoT22I | ATGCAT | 1 cut(s) | 958 |
| ErhI | CCWWGG | 1 cut(s) | 129 |
| FaeI | CATG | 8 cut(s) | 106, 217, 884, 893, 956, 1096, 1274, 1474 |
| FalI | AAGNNNNNCTT | 6 cut(s) | 309, 341, 534, 566, 1064, 1096 |
| FatI | CATG | 8 cut(s) | 102, 213, 880, 889, 952, 1092, 1270, 1470 |
| FauNDI | CATATG | 1 cut(s) | 404 |
| FbaI | TGATCA | 1 cut(s) | 1249 |
| FblI | GTMKAC | 1 cut(s) | 31 |
| Fnu4HI | GCNGC | 2 cut(s) | 81, 768 |
| FokI | GGATG | 6 cut(s) | 191, 434, 464, 589, 1211, 1403 |
| Fsp4HI | GCNGC | 2 cut(s) | 81, 768 |
| FspBI | CTAG | 1 cut(s) | 1311 |
| GluI | GCNGC | 2 cut(s) | 81, 768 |
| HaeIII | GGCC | 1 cut(s) | 285 |
| Hin1II | CATG | 8 cut(s) | 106, 217, 884, 893, 956, 1096, 1274, 1474 |
| HincII | GTYRAC | 2 cut(s) | 100, 473 |
| HindII | GTYRAC | 2 cut(s) | 100, 473 |
| HindIII | AAGCTT | 3 cut(s) | 113, 675, 1506 |
| HinfI | GANTC | 7 cut(s) | 625, 723, 779, 886, 1150, 1307, 1333 |
| HphI | GGTGA | 1 cut(s) | 838 |
| Hpy166II | GTNNAC | 4 cut(s) | 32, 100, 473, 1418 |
| Hpy188I | TCNGA | 4 cut(s) | 539, 754, 901, 1017 |
| Hpy188III | TCNNGA | 7 cut(s) | 224, 1115, 1130, 1311, 1337, 1343, 1410 |
| Hpy8I | GTNNAC | 4 cut(s) | 32, 100, 473, 1418 |
| HpyAV | CCTTC | 5 cut(s) | 211, 221, 635, 738, 982 |
| HpyCH4III | ACNGT | 2 cut(s) | 820, 1022 |
| HpyCH4IV | ACGT | 3 cut(s) | 340, 994, 1290 |
| HpyCH4V | TGCA | 6 cut(s) | 4, 316, 371, 956, 1051, 1064 |
| HpyF10VI | GCNNNNNNNGC | 3 cut(s) | 322, 674, 1271 |
| HpyF3I | CTNAG | 2 cut(s) | 200, 1140 |
| HpySE526I | ACGT | 3 cut(s) | 340, 994, 1290 |
| Hsp92II | CATG | 8 cut(s) | 106, 217, 884, 893, 956, 1096, 1274, 1474 |
| Ksp22I | TGATCA | 1 cut(s) | 1249 |
| Kzo9I | GATC | 6 cut(s) | 91, 749, 963, 1007, 1249, 1339 |
| Lsp1109I | GCAGC | 2 cut(s) | 92, 779 |
| LweI | GCATC | 1 cut(s) | 1038 |
| MaeI | CTAG | 1 cut(s) | 1311 |
| MaeII | ACGT | 3 cut(s) | 340, 994, 1290 |
| MaeIII | GTNAC | 3 cut(s) | 441, 784, 995 |
| MalI | GATC | 6 cut(s) | 93, 751, 965, 1009, 1251, 1341 |
| MboI | GATC | 6 cut(s) | 91, 749, 963, 1007, 1249, 1339 |
| MboII | GAAGA | 8 cut(s) | 25, 73, 196, 382, 683, 871, 1307, 1382 |
| MfeI | CAATTG | 1 cut(s) | 717 |
| MflI | RGATCY | 1 cut(s) | 91 |
| MluCI | AATT | 9 cut(s) | 118, 166, 320, 717, 1110, 1119, 1202, 1222, 1384 |
| MlyI | GAGTC | 1 cut(s) | 1327 |
| MmeI | TCCRAC | 1 cut(s) | 868 |
| MnlI | CCTC | 6 cut(s) | 357, 442, 448, 719, 1406, 1480 |
| Mph1103I | ATGCAT | 1 cut(s) | 958 |
| MroXI | GAANNNNTTC | 2 cut(s) | 324, 727 |
| MseI | TTAA | 8 cut(s) | 117, 122, 170, 311, 396, 801, 908, 1191 |
| MslI | CAYNNNNRTG | 1 cut(s) | 1245 |
| MspCI | CTTAAG | 1 cut(s) | 907 |
| MspR9I | CCNGG | 1 cut(s) | 57 |
| MunI | CAATTG | 1 cut(s) | 717 |
| MvaI | CCWGG | 1 cut(s) | 57 |
| MwoI | GCNNNNNNNGC | 3 cut(s) | 322, 674, 1271 |
| NdeI | CATATG | 1 cut(s) | 404 |
| NdeII | GATC | 6 cut(s) | 91, 749, 963, 1007, 1249, 1339 |
| NlaIII | CATG | 8 cut(s) | 106, 217, 884, 893, 956, 1096, 1274, 1474 |
| NmuCI | GTSAC | 1 cut(s) | 995 |
| NsiI | ATGCAT | 1 cut(s) | 958 |
| NspI | RCATGY | 1 cut(s) | 1096 |
| NspV | TTCGAA | 1 cut(s) | 588 |
| PcsI | WCGNNNNNNNCGW | 2 cut(s) | 1348, 1446 |
| PdmI | GAANNNNTTC | 2 cut(s) | 324, 727 |
| PfeI | GAWTC | 6 cut(s) | 625, 723, 779, 886, 1150, 1307 |
| PkrI | GCNGC | 2 cut(s) | 82, 769 |
| PleI | GAGTC | 1 cut(s) | 1327 |
| PmaCI | CACGTG | 1 cut(s) | 995 |
| PmlI | CACGTG | 1 cut(s) | 995 |
| PpsI | GAGTC | 1 cut(s) | 1327 |
| Ppu21I | YACGTR | 1 cut(s) | 995 |
| Psp6I | CCWGG | 1 cut(s) | 55 |
| PspCI | CACGTG | 1 cut(s) | 995 |
| PspGI | CCWGG | 1 cut(s) | 55 |
| PspPI | GGNCC | 1 cut(s) | 557 |
| PstNI | CAGNNNCTG | 1 cut(s) | 788 |
| PsuI | RGATCY | 1 cut(s) | 91 |
| RsaI | GTAC | 7 cut(s) | 40, 485, 516, 528, 686, 942, 1462 |
| RsaNI | GTAC | 7 cut(s) | 39, 484, 515, 527, 685, 941, 1461 |
| RseI | CAYNNNNRTG | 1 cut(s) | 1245 |
| SaqAI | TTAA | 8 cut(s) | 117, 122, 170, 311, 396, 801, 908, 1191 |
| SatI | GCNGC | 2 cut(s) | 81, 768 |
| Sau3AI | GATC | 6 cut(s) | 91, 749, 963, 1007, 1249, 1339 |
| Sau96I | GGNCC | 1 cut(s) | 557 |
| ScaI | AGTACT | 1 cut(s) | 686 |
| SchI | GAGTC | 1 cut(s) | 1327 |
| ScrFI | CCNGG | 1 cut(s) | 57 |
| SfaNI | GCATC | 1 cut(s) | 1038 |
| SfuI | TTCGAA | 1 cut(s) | 588 |
| SinI | GGWCC | 1 cut(s) | 557 |
| SmiMI | CAYNNNNRTG | 1 cut(s) | 1245 |
| SmlI | CTYRAG | 2 cut(s) | 476, 907 |
| SmoI | CTYRAG | 2 cut(s) | 476, 907 |
| Sse9I | AATT | 9 cut(s) | 118, 166, 320, 717, 1110, 1119, 1202, 1222, 1384 |
| SsiI | CCGC | 3 cut(s) | 555, 622, 1178 |
| SspMI | CTAG | 1 cut(s) | 1311 |
| StyD4I | CCNGG | 1 cut(s) | 55 |
| StyI | CCWWGG | 1 cut(s) | 129 |
| TaaI | ACNGT | 2 cut(s) | 820, 1022 |
| TaiI | ACGT | 3 cut(s) | 343, 997, 1293 |
| TaqI | TCGA | 5 cut(s) | 547, 571, 588, 1342, 1449 |
| TasI | AATT | 9 cut(s) | 118, 166, 320, 717, 1110, 1119, 1202, 1222, 1384 |
| TatI | WGTACW | 5 cut(s) | 483, 526, 684, 940, 1460 |
| TfiI | GAWTC | 6 cut(s) | 625, 723, 779, 886, 1150, 1307 |
| Tru1I | TTAA | 8 cut(s) | 117, 122, 170, 311, 396, 801, 908, 1191 |
| Tru9I | TTAA | 8 cut(s) | 117, 122, 170, 311, 396, 801, 908, 1191 |
| TscAI | CASTG | 2 cut(s) | 823, 1027 |
| TseFI | GTSAC | 1 cut(s) | 995 |
| TseI | GCWGC | 2 cut(s) | 80, 767 |
| Tsp45I | GTSAC | 1 cut(s) | 995 |
| TspDTI | ATGAA | 7 cut(s) | 230, 614, 852, 1215, 1383, 1443, 1459 |
| TspGWI | ACGGA | 1 cut(s) | 749 |
| TspRI | CASTG | 2 cut(s) | 823, 1027 |
| Vha464I | CTTAAG | 1 cut(s) | 907 |
| VpaK11BI | GGWCC | 1 cut(s) | 557 |
| XapI | RAATTY | 2 cut(s) | 166, 1119 |
| XbaI | TCTAGA | 1 cut(s) | 1310 |
| XceI | RCATGY | 1 cut(s) | 1096 |
| XmiI | GTMKAC | 1 cut(s) | 31 |
| XmnI | GAANNNNTTC | 2 cut(s) | 324, 727 |
| XspI | CTAG | 1 cut(s) | 1311 |
| ZrmI | AGTACT | 1 cut(s) | 686 |
| Zsp2I | ATGCAT | 1 cut(s) | 958 |