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| Enzyme | Recognition Site | Cut Count | Positions (bp) |
|---|---|---|---|
| AanI | TTATAA | 1 cut(s) | 201 |
| AarI | CACCTGC | 1 cut(s) | 2144 |
| AasI | GACNNNNNNGTC | 1 cut(s) | 1674 |
| Acc36I | ACCTGC | 3 cut(s) | 634, 798, 2144 |
| AccB1I | GGYRCC | 1 cut(s) | 1836 |
| AccIII | TCCGGA | 1 cut(s) | 902 |
| AciI | CCGC | 3 cut(s) | 851, 1062, 1621 |
| AcoI | YGGCCR | 2 cut(s) | 725, 821 |
| AcsI | RAATTY | 3 cut(s) | 71, 731, 1710 |
| AcuI | CTGAAG | 3 cut(s) | 386, 988, 1863 |
| AdeI | CACNNNGTG | 1 cut(s) | 476 |
| AfaI | GTAC | 9 cut(s) | 398, 409, 494, 812, 1263, 1422, 1480, 1921, 2505 |
| AflII | CTTAAG | 1 cut(s) | 2746 |
| AgeI | ACCGGT | 1 cut(s) | 2729 |
| AjnI | CCWGG | 3 cut(s) | 400, 916, 2193 |
| AloI | GAACNNNNNNTCC | 2 cut(s) | 423, 455 |
| Alw26I | GTCTC | 1 cut(s) | 1654 |
| AlwNI | CAGNNNCTG | 2 cut(s) | 67, 1616 |
| Ama87I | CYCGRG | 1 cut(s) | 1496 |
| Aor13HI | TCCGGA | 1 cut(s) | 902 |
| AoxI | GGCC | 4 cut(s) | 725, 821, 1361, 2703 |
| ApoI | RAATTY | 3 cut(s) | 71, 731, 1710 |
| AseI | ATTAAT | 1 cut(s) | 1050 |
| AsiGI | ACCGGT | 1 cut(s) | 2729 |
| Asp700I | GAANNNNTTC | 1 cut(s) | 1808 |
| AspA2I | CCTAGG | 1 cut(s) | 746 |
| AspS9I | GGNCC | 7 cut(s) | 166, 905, 1044, 1133, 1760, 2159, 2704 |
| AsuC2I | CCSGG | 3 cut(s) | 1497, 1498, 2395 |
| AsuHPI | GGTGA | 1 cut(s) | 1834 |
| AsuII | TTCGAA | 1 cut(s) | 2075 |
| AvaI | CYCGRG | 1 cut(s) | 1496 |
| AvaII | GGWCC | 6 cut(s) | 166, 905, 1044, 1133, 1760, 2159 |
| AvrII | CCTAGG | 1 cut(s) | 746 |
| BanI | GGYRCC | 1 cut(s) | 1836 |
| BbsI | GAAGAC | 3 cut(s) | 354, 1356, 1508 |
| BciT130I | CCWGG | 3 cut(s) | 402, 918, 2195 |
| BciVI | GTATCC | 5 cut(s) | 615, 1091, 1794, 2183, 2653 |
| BcnI | CCSGG | 3 cut(s) | 1497, 1498, 2395 |
| BcoDI | GTCTC | 1 cut(s) | 1654 |
| BfaI | CTAG | 7 cut(s) | 747, 761, 1194, 1290, 1397, 2313, 2418 |
| BfmI | CTRYAG | 2 cut(s) | 273, 2424 |
| BfrI | CTTAAG | 1 cut(s) | 2746 |
| BfuAI | ACCTGC | 3 cut(s) | 634, 798, 2144 |
| BfuI | GTATCC | 5 cut(s) | 615, 1091, 1794, 2183, 2653 |
| BlnI | CCTAGG | 1 cut(s) | 746 |
| BlpI | GCTNAGC | 1 cut(s) | 2526 |
| Bme1390I | CCNGG | 6 cut(s) | 402, 918, 1497, 1498, 2195, 2395 |
| Bme18I | GGWCC | 6 cut(s) | 166, 905, 1044, 1133, 1760, 2159 |
| BmeT110I | CYCGRG | 1 cut(s) | 1496 |
| BmgT120I | GGNCC | 7 cut(s) | 166, 905, 1044, 1133, 1760, 2159, 2704 |
| BmiI | GGNNCC | 6 cut(s) | 441, 752, 1643, 1838, 2391, 2706 |
| BmrFI | CCNGG | 6 cut(s) | 402, 918, 1497, 1498, 2195, 2395 |
| BpiI | GAAGAC | 3 cut(s) | 354, 1356, 1508 |
| BplI | GAGNNNNNCTC | 2 cut(s) | 1020, 1052 |
| Bpu1102I | GCTNAGC | 1 cut(s) | 2526 |
| Bpu14I | TTCGAA | 1 cut(s) | 2075 |
| BpuEI | CTTGAG | 2 cut(s) | 1763, 2556 |
| BpuMI | CCSGG | 3 cut(s) | 1497, 1498, 2395 |
| BsaAI | YACGTR | 1 cut(s) | 2684 |
| BsaJI | CCNNGG | 6 cut(s) | 400, 746, 854, 1496, 2220, 2393 |
| BsaWI | WCCGGW | 3 cut(s) | 902, 1271, 2729 |
| BsaXI | ACNNNNNCTCC | 4 cut(s) | 1266, 1296, 1958, 1988 |
| Bse118I | RCCGGY | 2 cut(s) | 823, 2729 |
| Bse1I | ACTGG | 3 cut(s) | 1561, 1763, 2084 |
| Bse3DI | GCAATG | 3 cut(s) | 1481, 2286, 2444 |
| BseAI | TCCGGA | 1 cut(s) | 902 |
| BseBI | CCWGG | 3 cut(s) | 402, 918, 2195 |
| BseDI | CCNNGG | 6 cut(s) | 400, 746, 854, 1496, 2220, 2393 |
| BseMI | GCAATG | 3 cut(s) | 1481, 2286, 2444 |
| BseMII | CTCAG | 1 cut(s) | 2540 |
| BseNI | ACTGG | 3 cut(s) | 1561, 1763, 2084 |
| BseRI | GAGGAG | 5 cut(s) | 350, 1028, 1259, 1262, 1292 |
| BsgI | GTGCAG | 1 cut(s) | 395 |
| BshFI | GGCC | 4 cut(s) | 727, 823, 1363, 2705 |
| BshNI | GGYRCC | 1 cut(s) | 1836 |
| BshTI | ACCGGT | 1 cut(s) | 2729 |
| BsiHKCI | CYCGRG | 1 cut(s) | 1496 |
| BsiSI | CCGG | 7 cut(s) | 728, 824, 903, 1272, 1497, 2395, 2730 |
| BsmAI | GTCTC | 1 cut(s) | 1654 |
| BsmI | GAATGC | 1 cut(s) | 25 |
| BsnI | GGCC | 4 cut(s) | 727, 823, 1363, 2705 |
| BsoBI | CYCGRG | 1 cut(s) | 1496 |
| Bsp119I | TTCGAA | 1 cut(s) | 2075 |
| Bsp13I | TCCGGA | 1 cut(s) | 902 |
| Bsp143I | GATC | 5 cut(s) | 897, 958, 1733, 2240, 2469 |
| Bsp1720I | GCTNAGC | 1 cut(s) | 2526 |
| Bsp19I | CCATGG | 1 cut(s) | 854 |
| BspACI | CCGC | 3 cut(s) | 851, 1062, 1621 |
| BspANI | GGCC | 4 cut(s) | 727, 823, 1363, 2705 |
| BspCNI | CTCAG | 1 cut(s) | 2539 |
| BspEI | TCCGGA | 1 cut(s) | 902 |
| BspHI | TCATGA | 1 cut(s) | 1170 |
| BspLI | GGNNCC | 6 cut(s) | 441, 752, 1643, 1838, 2391, 2706 |
| BspMI | ACCTGC | 3 cut(s) | 634, 798, 2144 |
| BspT104I | TTCGAA | 1 cut(s) | 2075 |
| BspT107I | GGYRCC | 1 cut(s) | 1836 |
| BspTI | CTTAAG | 1 cut(s) | 2746 |
| BsrDI | GCAATG | 3 cut(s) | 1481, 2286, 2444 |
| BsrFI | RCCGGY | 2 cut(s) | 823, 2729 |
| BsrI | ACTGG | 3 cut(s) | 1561, 1763, 2084 |
| BssAI | RCCGGY | 2 cut(s) | 823, 2729 |
| BssECI | CCNNGG | 6 cut(s) | 400, 746, 854, 1496, 2220, 2393 |
| BssMI | GATC | 5 cut(s) | 897, 958, 1733, 2240, 2469 |
| BssT1I | CCWWGG | 3 cut(s) | 746, 854, 2220 |
| Bst2UI | CCWGG | 3 cut(s) | 402, 918, 2195 |
| Bst4CI | ACNGT | 8 cut(s) | 63, 274, 1240, 1310, 1460, 1612, 2255, 2339 |
| Bst6I | CTCTTC | 5 cut(s) | 250, 863, 1869, 2487, 2709 |
| BstAFI | CTTAAG | 1 cut(s) | 2746 |
| BstAPI | GCANNNNNTGC | 2 cut(s) | 1714, 2678 |
| BstBAI | YACGTR | 1 cut(s) | 2684 |
| BstBI | TTCGAA | 1 cut(s) | 2075 |
| BstC8I | GCNNGC | 7 cut(s) | 546, 821, 1221, 1254, 1361, 2271, 2652 |
| BstDEI | CTNAG | 6 cut(s) | 473, 800, 1025, 2022, 2432, 2526 |
| BstDSI | CCRYGG | 1 cut(s) | 854 |
| BstKTI | GATC | 5 cut(s) | 900, 961, 1736, 2243, 2472 |
| BstMAI | GTCTC | 1 cut(s) | 1654 |
| BstMBI | GATC | 5 cut(s) | 897, 958, 1733, 2240, 2469 |
| BstMWI | GCNNNNNNNGC | 4 cut(s) | 126, 1714, 1922, 2678 |
| BstNI | CCWGG | 3 cut(s) | 402, 918, 2195 |
| BstNSI | RCATGY | 1 cut(s) | 548 |
| BstSCI | CCNGG | 6 cut(s) | 400, 916, 1495, 1496, 2193, 2393 |
| BstSFI | CTRYAG | 2 cut(s) | 273, 2424 |
| BstV2I | GAAGAC | 3 cut(s) | 354, 1356, 1508 |
| BstXI | CCANNNNNNTGG | 1 cut(s) | 2201 |
| BsuI | GTATCC | 5 cut(s) | 615, 1091, 1794, 2183, 2653 |
| BsuRI | GGCC | 4 cut(s) | 727, 823, 1363, 2705 |
| BtgI | CCRYGG | 1 cut(s) | 854 |
| BtsIMutI | CAGTG | 2 cut(s) | 1617, 2260 |
| BveI | ACCTGC | 3 cut(s) | 634, 798, 2144 |
| Cac8I | GCNNGC | 7 cut(s) | 546, 821, 1221, 1254, 1361, 2271, 2652 |
| CaiI | CAGNNNCTG | 2 cut(s) | 67, 1616 |
| CciI | TCATGA | 1 cut(s) | 1170 |
| Cfr10I | RCCGGY | 2 cut(s) | 823, 2729 |
| Cfr13I | GGNCC | 7 cut(s) | 166, 905, 1044, 1133, 1760, 2159, 2704 |
| Cfr9I | CCCGGG | 1 cut(s) | 1496 |
| CseI | GACGC | 2 cut(s) | 514, 898 |
| CsiI | ACCWGGT | 2 cut(s) | 916, 2193 |
| Csp6I | GTAC | 9 cut(s) | 397, 408, 493, 811, 1262, 1421, 1479, 1920, 2504 |
| CspAI | ACCGGT | 1 cut(s) | 2729 |
| CviQI | GTAC | 9 cut(s) | 397, 408, 493, 811, 1262, 1421, 1479, 1920, 2504 |
| DdeI | CTNAG | 6 cut(s) | 473, 800, 1025, 2022, 2432, 2526 |
| DpnI | GATC | 5 cut(s) | 899, 960, 1735, 2242, 2471 |
| DpnII | GATC | 5 cut(s) | 897, 958, 1733, 2240, 2469 |
| DraI | TTTAAA | 1 cut(s) | 1021 |
| DraIII | CACNNNGTG | 1 cut(s) | 476 |
| DrdI | GACNNNNNNGTC | 1 cut(s) | 1674 |
| DseDI | GACNNNNNNGTC | 1 cut(s) | 1674 |
| EaeI | YGGCCR | 2 cut(s) | 725, 821 |
| Eam1104I | CTCTTC | 5 cut(s) | 250, 863, 1869, 2487, 2709 |
| EarI | CTCTTC | 5 cut(s) | 250, 863, 1869, 2487, 2709 |
| EciI | GGCGGA | 1 cut(s) | 840 |
| Eco130I | CCWWGG | 3 cut(s) | 746, 854, 2220 |
| Eco147I | AGGCCT | 1 cut(s) | 1363 |
| Eco47I | GGWCC | 6 cut(s) | 166, 905, 1044, 1133, 1760, 2159 |
| Eco57I | CTGAAG | 3 cut(s) | 386, 988, 1863 |
| Eco88I | CYCGRG | 1 cut(s) | 1496 |
| EcoO109I | RGGNCCY | 1 cut(s) | 2704 |
| EcoRII | CCWGG | 3 cut(s) | 400, 916, 2193 |
| EcoT14I | CCWWGG | 3 cut(s) | 746, 854, 2220 |
| ErhI | CCWWGG | 3 cut(s) | 746, 854, 2220 |
| FalI | AAGNNNNNCTT | 2 cut(s) | 1348, 1380 |
| FauI | CCCGC | 1 cut(s) | 1069 |
| FauNDI | CATATG | 1 cut(s) | 2677 |
| FspBI | CTAG | 7 cut(s) | 747, 761, 1194, 1290, 1397, 2313, 2418 |
| HaeIII | GGCC | 4 cut(s) | 727, 823, 1363, 2705 |
| HapII | CCGG | 7 cut(s) | 728, 824, 903, 1272, 1497, 2395, 2730 |
| HgaI | GACGC | 2 cut(s) | 514, 898 |
| HincII | GTYRAC | 2 cut(s) | 715, 888 |
| HindII | GTYRAC | 2 cut(s) | 715, 888 |
| HinfI | GANTC | 8 cut(s) | 263, 350, 502, 634, 692, 1564, 1929, 2062 |
| HpaII | CCGG | 7 cut(s) | 728, 824, 903, 1272, 1497, 2395, 2730 |
| HphI | GGTGA | 1 cut(s) | 1834 |
| Hpy166II | GTNNAC | 5 cut(s) | 715, 888, 1133, 2159, 2735 |
| Hpy188I | TCNGA | 9 cut(s) | 69, 268, 346, 366, 639, 775, 1007, 1113, 2600 |
| Hpy188III | TCNNGA | 6 cut(s) | 903, 1042, 1171, 1433, 1742, 1988 |
| Hpy8I | GTNNAC | 5 cut(s) | 715, 888, 1133, 2159, 2735 |
| Hpy99I | CGWCG | 1 cut(s) | 1185 |
| HpyAV | CCTTC | 6 cut(s) | 24, 311, 764, 1012, 1838, 2662 |
| HpyCH4III | ACNGT | 8 cut(s) | 63, 274, 1240, 1310, 1460, 1612, 2255, 2339 |
| HpyCH4IV | ACGT | 6 cut(s) | 109, 933, 1900, 2042, 2683, 2724 |
| HpyF10VI | GCNNNNNNNGC | 4 cut(s) | 126, 1714, 1922, 2678 |
| HpyF3I | CTNAG | 6 cut(s) | 473, 800, 1025, 2022, 2432, 2526 |
| HpySE526I | ACGT | 6 cut(s) | 109, 933, 1900, 2042, 2683, 2724 |
| Kpn2I | TCCGGA | 1 cut(s) | 902 |
| Kzo9I | GATC | 5 cut(s) | 897, 958, 1733, 2240, 2469 |
| LmnI | GCTCC | 6 cut(s) | 1249, 1261, 1641, 1722, 2224, 2395 |
| MabI | ACCWGGT | 2 cut(s) | 916, 2193 |
| MaeI | CTAG | 7 cut(s) | 747, 761, 1194, 1290, 1397, 2313, 2418 |
| MaeII | ACGT | 6 cut(s) | 109, 933, 1900, 2042, 2683, 2724 |
| MaeIII | GTNAC | 5 cut(s) | 33, 835, 1694, 2228, 2725 |
| MalI | GATC | 5 cut(s) | 899, 960, 1735, 2242, 2471 |
| MboI | GATC | 5 cut(s) | 897, 958, 1733, 2240, 2469 |
| MluCI | AATT | 6 cut(s) | 71, 590, 731, 1383, 1572, 1710 |
| MlyI | GAGTC | 1 cut(s) | 344 |
| MmeI | TCCRAC | 3 cut(s) | 1349, 2343, 2671 |
| MroI | TCCGGA | 1 cut(s) | 902 |
| MroXI | GAANNNNTTC | 1 cut(s) | 1808 |
| MslI | CAYNNNNRTG | 6 cut(s) | 549, 651, 859, 1703, 1805, 1947 |
| MspA1I | CMGCKG | 2 cut(s) | 689, 2486 |
| MspCI | CTTAAG | 1 cut(s) | 2746 |
| MspI | CCGG | 7 cut(s) | 728, 824, 903, 1272, 1497, 2395, 2730 |
| MspR9I | CCNGG | 6 cut(s) | 402, 918, 1497, 1498, 2195, 2395 |
| Mva1269I | GAATGC | 1 cut(s) | 25 |
| MvaI | CCWGG | 3 cut(s) | 402, 918, 2195 |
| MwoI | GCNNNNNNNGC | 4 cut(s) | 126, 1714, 1922, 2678 |
| NciI | CCSGG | 3 cut(s) | 1497, 1498, 2395 |
| NcoI | CCATGG | 1 cut(s) | 854 |
| NdeI | CATATG | 1 cut(s) | 2677 |
| NdeII | GATC | 5 cut(s) | 897, 958, 1733, 2240, 2469 |
| NlaIV | GGNNCC | 6 cut(s) | 441, 752, 1643, 1838, 2391, 2706 |
| NmuCI | GTSAC | 4 cut(s) | 33, 835, 1694, 2228 |
| NspI | RCATGY | 1 cut(s) | 548 |
| NspV | TTCGAA | 1 cut(s) | 2075 |
| PaeI | GCATGC | 1 cut(s) | 548 |
| PagI | TCATGA | 1 cut(s) | 1170 |
| PaqCI | CACCTGC | 1 cut(s) | 2144 |
| PceI | AGGCCT | 1 cut(s) | 1363 |
| PcsI | WCGNNNNNNNCGW | 2 cut(s) | 1216, 1970 |
| PctI | GAATGC | 1 cut(s) | 25 |
| PdmI | GAANNNNTTC | 1 cut(s) | 1808 |
| PfeI | GAWTC | 7 cut(s) | 263, 502, 634, 692, 1564, 1929, 2062 |
| PinAI | ACCGGT | 1 cut(s) | 2729 |
| PleI | GAGTC | 1 cut(s) | 344 |
| PpsI | GAGTC | 1 cut(s) | 344 |
| Ppu21I | YACGTR | 1 cut(s) | 2684 |
| PshBI | ATTAAT | 1 cut(s) | 1050 |
| PsiI | TTATAA | 1 cut(s) | 201 |
| Psp6I | CCWGG | 3 cut(s) | 400, 916, 2193 |
| PspGI | CCWGG | 3 cut(s) | 400, 916, 2193 |
| PspN4I | GGNNCC | 6 cut(s) | 441, 752, 1643, 1838, 2391, 2706 |
| PspPI | GGNCC | 7 cut(s) | 166, 905, 1044, 1133, 1760, 2159, 2704 |
| PstNI | CAGNNNCTG | 2 cut(s) | 67, 1616 |
| PvuII | CAGCTG | 2 cut(s) | 689, 2486 |
| RsaI | GTAC | 9 cut(s) | 398, 409, 494, 812, 1263, 1422, 1480, 1921, 2505 |
| RsaNI | GTAC | 9 cut(s) | 397, 408, 493, 811, 1262, 1421, 1479, 1920, 2504 |
| RseI | CAYNNNNRTG | 6 cut(s) | 549, 651, 859, 1703, 1805, 1947 |
| Sau3AI | GATC | 5 cut(s) | 897, 958, 1733, 2240, 2469 |
| Sau96I | GGNCC | 7 cut(s) | 166, 905, 1044, 1133, 1760, 2159, 2704 |
| SchI | GAGTC | 1 cut(s) | 344 |
| ScrFI | CCNGG | 6 cut(s) | 402, 918, 1497, 1498, 2195, 2395 |
| SexAI | ACCWGGT | 2 cut(s) | 916, 2193 |
| SfcI | CTRYAG | 2 cut(s) | 273, 2424 |
| SfuI | TTCGAA | 1 cut(s) | 2075 |
| SinI | GGWCC | 6 cut(s) | 166, 905, 1044, 1133, 1760, 2159 |
| SmaI | CCCGGG | 1 cut(s) | 1498 |
| SmiMI | CAYNNNNRTG | 6 cut(s) | 549, 651, 859, 1703, 1805, 1947 |
| SmlI | CTYRAG | 3 cut(s) | 1742, 2571, 2746 |
| SmoI | CTYRAG | 3 cut(s) | 1742, 2571, 2746 |
| SphI | GCATGC | 1 cut(s) | 548 |
| Sse9I | AATT | 6 cut(s) | 71, 590, 731, 1383, 1572, 1710 |
| SseBI | AGGCCT | 1 cut(s) | 1363 |
| SsiI | CCGC | 3 cut(s) | 851, 1062, 1621 |
| SspMI | CTAG | 7 cut(s) | 747, 761, 1194, 1290, 1397, 2313, 2418 |
| StuI | AGGCCT | 1 cut(s) | 1363 |
| StyD4I | CCNGG | 6 cut(s) | 400, 916, 1495, 1496, 2193, 2393 |
| StyI | CCWWGG | 3 cut(s) | 746, 854, 2220 |
| TaaI | ACNGT | 8 cut(s) | 63, 274, 1240, 1310, 1460, 1612, 2255, 2339 |
| TaiI | ACGT | 6 cut(s) | 112, 936, 1903, 2045, 2686, 2727 |
| TaqI | TCGA | 9 cut(s) | 757, 1183, 1210, 1230, 1434, 1774, 1872, 2075, 2239 |
| TasI | AATT | 6 cut(s) | 71, 590, 731, 1383, 1572, 1710 |
| TfiI | GAWTC | 7 cut(s) | 263, 502, 634, 692, 1564, 1929, 2062 |
| TscAI | CASTG | 2 cut(s) | 1617, 2260 |
| TseFI | GTSAC | 4 cut(s) | 33, 835, 1694, 2228 |
| Tsp45I | GTSAC | 4 cut(s) | 33, 835, 1694, 2228 |
| TspGWI | ACGGA | 2 cut(s) | 52, 1979 |
| TspMI | CCCGGG | 1 cut(s) | 1496 |
| TspRI | CASTG | 2 cut(s) | 1617, 2260 |
| Vha464I | CTTAAG | 1 cut(s) | 2746 |
| VpaK11BI | GGWCC | 6 cut(s) | 166, 905, 1044, 1133, 1760, 2159 |
| VspI | ATTAAT | 1 cut(s) | 1050 |
| XapI | RAATTY | 3 cut(s) | 71, 731, 1710 |
| XceI | RCATGY | 1 cut(s) | 548 |
| XmaI | CCCGGG | 1 cut(s) | 1496 |
| XmaJI | CCTAGG | 1 cut(s) | 746 |
| XmnI | GAANNNNTTC | 1 cut(s) | 1808 |
| XspI | CTAG | 7 cut(s) | 747, 761, 1194, 1290, 1397, 2313, 2418 |