source UniProtKB
| Domain Name | Pfam ID | Position | E-value | Description |
|---|---|---|---|---|
| Transpos_assoc | PF13963 | 70 - 142 | 3.7e-18 | Transposase-associated domain |
| Transposase_21 | PF02992 | 312 - 349 | 6.1e-10 | Transposase family tnp2 |
| Transposase_21 | PF02992 | 348 - 455 | 5.1e-34 | Transposase family tnp2 |
| DUF4218 | PF13960 | 629 - 730 | 9.5e-35 | Domain of unknown function (DUF4218) |
| DUF4216 | PF13952 | 902 - 966 | 6.3e-17 | Domain of unknown function (DUF4216) |
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| Enzyme | Recognition Site | Cut Count | Positions (bp) |
|---|---|---|---|
| AanI | TTATAA | 2 cut(s) | 747, 1242 |
| AasI | GACNNNNNNGTC | 1 cut(s) | 2362 |
| AccI | GTMKAC | 2 cut(s) | 1513, 1581 |
| AccII | CGCG | 1 cut(s) | 12 |
| AciI | CCGC | 4 cut(s) | 97, 100, 103, 2753 |
| AclWI | GGATC | 4 cut(s) | 719, 1581, 2174, 2867 |
| AcoI | YGGCCR | 2 cut(s) | 937, 1276 |
| AcsI | RAATTY | 3 cut(s) | 901, 998, 1213 |
| AcuI | CTGAAG | 3 cut(s) | 525, 1728, 2220 |
| AcvI | CACGTG | 1 cut(s) | 2570 |
| AfiI | CCNNNNNNNGG | 6 cut(s) | 832, 1001, 1259, 1616, 1617, 2487 |
| AflII | CTTAAG | 1 cut(s) | 2482 |
| AflIII | ACRYGT | 3 cut(s) | 770, 2512, 2667 |
| AgeI | ACCGGT | 1 cut(s) | 2041 |
| AhlI | ACTAGT | 2 cut(s) | 976, 2932 |
| AjiI | CACGTC | 1 cut(s) | 353 |
| AjnI | CCWGG | 4 cut(s) | 484, 643, 1537, 2277 |
| Alw21I | GWGCWC | 3 cut(s) | 1440, 2160, 2451 |
| Alw26I | GTCTC | 6 cut(s) | 1018, 1338, 1459, 1744, 2599, 3060 |
| AlwI | GGATC | 4 cut(s) | 719, 1581, 2174, 2867 |
| AlwNI | CAGNNNCTG | 1 cut(s) | 2261 |
| Ama87I | CYCGRG | 3 cut(s) | 781, 1439, 2450 |
| AoxI | GGCC | 5 cut(s) | 937, 992, 1276, 1449, 2280 |
| ApeKI | GCWGC | 4 cut(s) | 278, 1407, 2240, 2948 |
| ApoI | RAATTY | 3 cut(s) | 901, 998, 1213 |
| AsiGI | ACCGGT | 1 cut(s) | 2041 |
| Asp700I | GAANNNNTTC | 2 cut(s) | 1806, 2200 |
| AspS9I | GGNCC | 7 cut(s) | 482, 823, 1046, 1449, 2039, 2281, 2915 |
| AsuHPI | GGTGA | 6 cut(s) | 19, 752, 843, 1274, 1849, 2365 |
| AsuII | TTCGAA | 1 cut(s) | 2070 |
| AvaI | CYCGRG | 3 cut(s) | 781, 1439, 2450 |
| AvaII | GGWCC | 5 cut(s) | 482, 823, 1046, 2039, 2915 |
| AxyI | CCTNAGG | 1 cut(s) | 3039 |
| BaeI | ACNNNNGTAYC | 2 cut(s) | 1980, 2013 |
| BalI | TGGCCA | 1 cut(s) | 1278 |
| BanII | GRGCYC | 2 cut(s) | 1440, 2451 |
| BauI | CACGAG | 1 cut(s) | 3154 |
| BbrPI | CACGTG | 1 cut(s) | 2570 |
| BbsI | GAAGAC | 2 cut(s) | 1550, 3018 |
| Bbv12I | GWGCWC | 3 cut(s) | 1440, 2160, 2451 |
| BbvI | GCAGC | 4 cut(s) | 290, 1394, 2252, 2960 |
| BceAI | ACGGC | 1 cut(s) | 952 |
| BcgI | CGANNNNNNTGC | 4 cut(s) | 1131, 1165, 1769, 1803 |
| BciT130I | CCWGG | 4 cut(s) | 486, 645, 1539, 2279 |
| BciVI | GTATCC | 2 cut(s) | 2073, 3148 |
| BclI | TGATCA | 4 cut(s) | 523, 1375, 2824, 2842 |
| BcoDI | GTCTC | 6 cut(s) | 1018, 1338, 1459, 1744, 2599, 3060 |
| BcuI | ACTAGT | 2 cut(s) | 976, 2932 |
| BfrI | CTTAAG | 1 cut(s) | 2482 |
| BfuI | GTATCC | 2 cut(s) | 2073, 3148 |
| BisI | GCNGC | 7 cut(s) | 98, 101, 104, 279, 1408, 2241, 2949 |
| BlsI | GCNGC | 7 cut(s) | 99, 102, 105, 280, 1409, 2242, 2950 |
| BmcAI | AGTACT | 2 cut(s) | 1157, 1445 |
| Bme1390I | CCNGG | 4 cut(s) | 486, 645, 1539, 2279 |
| Bme18I | GGWCC | 5 cut(s) | 482, 823, 1046, 2039, 2915 |
| BmeT110I | CYCGRG | 3 cut(s) | 781, 1439, 2450 |
| BmgBI | CACGTC | 1 cut(s) | 353 |
| BmgT120I | GGNCC | 7 cut(s) | 482, 823, 1046, 1449, 2039, 2281, 2915 |
| BmiI | GGNNCC | 5 cut(s) | 824, 825, 1704, 2426, 2727 |
| BmrFI | CCNGG | 4 cut(s) | 486, 645, 1539, 2279 |
| BmrI | ACTGGG | 1 cut(s) | 1456 |
| BmsI | GCATC | 3 cut(s) | 143, 207, 1129 |
| BmuI | ACTGGG | 1 cut(s) | 1456 |
| BpiI | GAAGAC | 2 cut(s) | 1550, 3018 |
| BplI | GAGNNNNNCTC | 4 cut(s) | 1015, 1047, 2147, 2179 |
| Bpu14I | TTCGAA | 1 cut(s) | 2070 |
| BpuEI | CTTGAG | 4 cut(s) | 242, 1042, 1979, 2821 |
| BsaAI | YACGTR | 2 cut(s) | 771, 2570 |
| BsaI | GGTCTC | 1 cut(s) | 1744 |
| BsaJI | CCNNGG | 2 cut(s) | 831, 1538 |
| BsaWI | WCCGGW | 1 cut(s) | 2041 |
| Bsc4I | CCNNNNNNNGG | 6 cut(s) | 832, 1001, 1259, 1616, 1617, 2487 |
| Bse118I | RCCGGY | 1 cut(s) | 2041 |
| Bse1I | ACTGG | 3 cut(s) | 885, 1451, 3074 |
| Bse21I | CCTNAGG | 1 cut(s) | 3039 |
| BseBI | CCWGG | 4 cut(s) | 486, 645, 1539, 2279 |
| BseDI | CCNNGG | 2 cut(s) | 831, 1538 |
| BseLI | CCNNNNNNNGG | 6 cut(s) | 832, 1001, 1259, 1616, 1617, 2487 |
| BseMII | CTCAG | 4 cut(s) | 564, 888, 3030, 3090 |
| BseNI | ACTGG | 3 cut(s) | 885, 1451, 3074 |
| BseRI | GAGGAG | 1 cut(s) | 3056 |
| BseXI | GCAGC | 4 cut(s) | 290, 1394, 2252, 2960 |
| Bsh1236I | CGCG | 1 cut(s) | 12 |
| BshFI | GGCC | 5 cut(s) | 939, 994, 1278, 1451, 2282 |
| BshTI | ACCGGT | 1 cut(s) | 2041 |
| BsiHKAI | GWGCWC | 3 cut(s) | 1440, 2160, 2451 |
| BsiHKCI | CYCGRG | 3 cut(s) | 781, 1439, 2450 |
| BsiSI | CCGG | 1 cut(s) | 2042 |
| BslFI | GGGAC | 2 cut(s) | 809, 1236 |
| BslI | CCNNNNNNNGG | 6 cut(s) | 832, 1001, 1259, 1616, 1617, 2487 |
| BsmAI | GTCTC | 6 cut(s) | 1018, 1338, 1459, 1744, 2599, 3060 |
| BsmFI | GGGAC | 2 cut(s) | 809, 1236 |
| BsmI | GAATGC | 3 cut(s) | 628, 689, 757 |
| BsnI | GGCC | 5 cut(s) | 939, 994, 1278, 1451, 2282 |
| Bso31I | GGTCTC | 1 cut(s) | 1744 |
| BsoBI | CYCGRG | 3 cut(s) | 781, 1439, 2450 |
| Bsp119I | TTCGAA | 1 cut(s) | 2070 |
| Bsp1286I | GDGCHC | 3 cut(s) | 1440, 2160, 2451 |
| Bsp1407I | TGTACA | 3 cut(s) | 2008, 2101, 2587 |
| Bsp68I | TCGCGA | 1 cut(s) | 12 |
| BspACI | CCGC | 4 cut(s) | 97, 100, 103, 2753 |
| BspANI | GGCC | 5 cut(s) | 939, 994, 1278, 1451, 2282 |
| BspCNI | CTCAG | 4 cut(s) | 563, 889, 3031, 3091 |
| BspFNI | CGCG | 1 cut(s) | 12 |
| BspHI | TCATGA | 2 cut(s) | 526, 1378 |
| BspLI | GGNNCC | 5 cut(s) | 824, 825, 1704, 2426, 2727 |
| BspPI | GGATC | 4 cut(s) | 719, 1581, 2174, 2867 |
| BspT104I | TTCGAA | 1 cut(s) | 2070 |
| BspTI | CTTAAG | 1 cut(s) | 2482 |
| BspTNI | GGTCTC | 1 cut(s) | 1744 |
| BsrFI | RCCGGY | 1 cut(s) | 2041 |
| BsrGI | TGTACA | 3 cut(s) | 2008, 2101, 2587 |
| BsrI | ACTGG | 3 cut(s) | 885, 1451, 3074 |
| BssAI | RCCGGY | 1 cut(s) | 2041 |
| BssECI | CCNNGG | 2 cut(s) | 831, 1538 |
| BssNAI | GTATAC | 1 cut(s) | 1514 |
| BssSI | CACGAG | 1 cut(s) | 3154 |
| BssT1I | CCWWGG | 1 cut(s) | 831 |
| Bst1107I | GTATAC | 1 cut(s) | 1514 |
| Bst2BI | CACGAG | 1 cut(s) | 3154 |
| Bst2UI | CCWGG | 4 cut(s) | 486, 645, 1539, 2279 |
| Bst4CI | ACNGT | 5 cut(s) | 969, 1472, 2191, 2293, 2725 |
| Bst6I | CTCTTC | 1 cut(s) | 1661 |
| BstAFI | CTTAAG | 1 cut(s) | 2482 |
| BstAPI | GCANNNNNTGC | 2 cut(s) | 287, 1804 |
| BstAUI | TGTACA | 3 cut(s) | 2008, 2101, 2587 |
| BstBAI | YACGTR | 2 cut(s) | 771, 2570 |
| BstBI | TTCGAA | 1 cut(s) | 2070 |
| BstC8I | GCNNGC | 1 cut(s) | 915 |
| BstDEI | CTNAG | 9 cut(s) | 550, 897, 1081, 1166, 1911, 2562, 2715, 3039, 3099 |
| BstFNI | CGCG | 1 cut(s) | 12 |
| BstMAI | GTCTC | 6 cut(s) | 1018, 1338, 1459, 1744, 2599, 3060 |
| BstMWI | GCNNNNNNNGC | 4 cut(s) | 103, 287, 1804, 2846 |
| BstNI | CCWGG | 4 cut(s) | 486, 645, 1539, 2279 |
| BstNSI | RCATGY | 7 cut(s) | 917, 946, 1251, 1388, 2516, 2671, 2955 |
| BstSCI | CCNGG | 4 cut(s) | 484, 643, 1537, 2277 |
| BstUI | CGCG | 1 cut(s) | 12 |
| BstV1I | GCAGC | 4 cut(s) | 290, 1394, 2252, 2960 |
| BstV2I | GAAGAC | 2 cut(s) | 1550, 3018 |
| BstX2I | RGATCY | 2 cut(s) | 1573, 2872 |
| BstYI | RGATCY | 2 cut(s) | 1573, 2872 |
| BstZ17I | GTATAC | 1 cut(s) | 1514 |
| Bsu36I | CCTNAGG | 1 cut(s) | 3039 |
| BsuI | GTATCC | 2 cut(s) | 2073, 3148 |
| BsuRI | GGCC | 5 cut(s) | 939, 994, 1278, 1451, 2282 |
| BtrI | CACGTC | 1 cut(s) | 353 |
| BtsI | GCAGTG | 1 cut(s) | 2158 |
| BtsIMutI | CAGTG | 5 cut(s) | 721, 892, 974, 1468, 2158 |
| BtuMI | TCGCGA | 1 cut(s) | 12 |
| Cac8I | GCNNGC | 1 cut(s) | 915 |
| CaiI | CAGNNNCTG | 1 cut(s) | 2261 |
| CciI | TCATGA | 2 cut(s) | 526, 1378 |
| Cfr10I | RCCGGY | 1 cut(s) | 2041 |
| Cfr13I | GGNCC | 7 cut(s) | 482, 823, 1046, 1449, 2039, 2281, 2915 |
| CseI | GACGC | 2 cut(s) | 185, 935 |
| CspAI | ACCGGT | 1 cut(s) | 2041 |
| DdeI | CTNAG | 9 cut(s) | 550, 897, 1081, 1166, 1911, 2562, 2715, 3039, 3099 |
| DraI | TTTAAA | 1 cut(s) | 3007 |
| DrdI | GACNNNNNNGTC | 1 cut(s) | 2362 |
| DseDI | GACNNNNNNGTC | 1 cut(s) | 2362 |
| EaeI | YGGCCR | 2 cut(s) | 937, 1276 |
| Eam1104I | CTCTTC | 1 cut(s) | 1661 |
| EarI | CTCTTC | 1 cut(s) | 1661 |
| Ecl136II | GAGCTC | 2 cut(s) | 1438, 2449 |
| Eco130I | CCWWGG | 1 cut(s) | 831 |
| Eco24I | GRGCYC | 2 cut(s) | 1440, 2451 |
| Eco31I | GGTCTC | 1 cut(s) | 1744 |
| Eco32I | GATATC | 2 cut(s) | 778, 2695 |
| Eco47I | GGWCC | 5 cut(s) | 482, 823, 1046, 2039, 2915 |
| Eco53kI | GAGCTC | 2 cut(s) | 1438, 2449 |
| Eco57I | CTGAAG | 3 cut(s) | 525, 1728, 2220 |
| Eco72I | CACGTG | 1 cut(s) | 2570 |
| Eco81I | CCTNAGG | 1 cut(s) | 3039 |
| Eco88I | CYCGRG | 3 cut(s) | 781, 1439, 2450 |
| EcoICRI | GAGCTC | 2 cut(s) | 1438, 2449 |
| EcoO109I | RGGNCCY | 1 cut(s) | 823 |
| EcoRI | GAATTC | 2 cut(s) | 998, 1213 |
| EcoRII | CCWGG | 4 cut(s) | 484, 643, 1537, 2277 |
| EcoRV | GATATC | 2 cut(s) | 778, 2695 |
| EcoT14I | CCWWGG | 1 cut(s) | 831 |
| EcoT22I | ATGCAT | 3 cut(s) | 574, 1144, 1249 |
| EcoT38I | GRGCYC | 2 cut(s) | 1440, 2451 |
| ErhI | CCWWGG | 1 cut(s) | 831 |
| FalI | AAGNNNNNCTT | 4 cut(s) | 107, 139, 1791, 1823 |
| FaqI | GGGAC | 2 cut(s) | 809, 1236 |
| FauNDI | CATATG | 4 cut(s) | 244, 574, 1886, 2337 |
| FbaI | TGATCA | 4 cut(s) | 523, 1375, 2824, 2842 |
| FblI | GTMKAC | 2 cut(s) | 1513, 1581 |
| Fnu4HI | GCNGC | 7 cut(s) | 98, 101, 104, 279, 1408, 2241, 2949 |
| FriOI | GRGCYC | 2 cut(s) | 1440, 2451 |
| Fsp4HI | GCNGC | 7 cut(s) | 98, 101, 104, 279, 1408, 2241, 2949 |
| GluI | GCNGC | 7 cut(s) | 98, 101, 104, 279, 1408, 2241, 2949 |
| HaeIII | GGCC | 5 cut(s) | 939, 994, 1278, 1451, 2282 |
| HapII | CCGG | 1 cut(s) | 2042 |
| HgaI | GACGC | 2 cut(s) | 185, 935 |
| HincII | GTYRAC | 5 cut(s) | 547, 1582, 1955, 2797, 3096 |
| HindII | GTYRAC | 5 cut(s) | 547, 1582, 1955, 2797, 3096 |
| HindIII | AAGCTT | 2 cut(s) | 1358, 1595 |
| HpaI | GTTAAC | 2 cut(s) | 2797, 3096 |
| HpaII | CCGG | 1 cut(s) | 2042 |
| HphI | GGTGA | 6 cut(s) | 19, 752, 843, 1274, 1849, 2365 |
| Hpy99I | CGWCG | 3 cut(s) | 53, 1222, 1583 |
| HpyAV | CCTTC | 8 cut(s) | 254, 438, 808, 1693, 1703, 2211, 2344, 2422 |
| HpyCH4III | ACNGT | 5 cut(s) | 969, 1472, 2191, 2293, 2725 |
| HpyCH4IV | ACGT | 6 cut(s) | 352, 478, 543, 770, 1822, 2569 |
| HpyF10VI | GCNNNNNNNGC | 4 cut(s) | 103, 287, 1804, 2846 |
| HpyF3I | CTNAG | 9 cut(s) | 550, 897, 1081, 1166, 1911, 2562, 2715, 3039, 3099 |
| HpySE526I | ACGT | 6 cut(s) | 352, 478, 543, 770, 1822, 2569 |
| KflI | GGGWCCC | 1 cut(s) | 823 |
| Ksp22I | TGATCA | 4 cut(s) | 523, 1375, 2824, 2842 |
| KspAI | GTTAAC | 2 cut(s) | 2797, 3096 |
| LmnI | GCTCC | 1 cut(s) | 48 |
| Lsp1109I | GCAGC | 4 cut(s) | 290, 1394, 2252, 2960 |
| LweI | GCATC | 3 cut(s) | 143, 207, 1129 |
| MaeII | ACGT | 6 cut(s) | 352, 478, 543, 770, 1822, 2569 |
| MaeIII | GTNAC | 4 cut(s) | 1923, 2353, 2388, 3151 |
| MfeI | CAATTG | 3 cut(s) | 1812, 1841, 2307 |
| MflI | RGATCY | 2 cut(s) | 1573, 2872 |
| MhlI | GDGCHC | 3 cut(s) | 1440, 2160, 2451 |
| MlsI | TGGCCA | 1 cut(s) | 1278 |
| MluNI | TGGCCA | 1 cut(s) | 1278 |
| MlyI | GAGTC | 4 cut(s) | 446, 542, 2547, 2995 |
| MmeI | TCCRAC | 3 cut(s) | 31, 1099, 2173 |
| Mox20I | TGGCCA | 1 cut(s) | 1278 |
| Mph1103I | ATGCAT | 3 cut(s) | 574, 1144, 1249 |
| MroXI | GAANNNNTTC | 2 cut(s) | 1806, 2200 |
| MscI | TGGCCA | 1 cut(s) | 1278 |
| MslI | CAYNNNNRTG | 9 cut(s) | 477, 597, 734, 918, 1383, 1389, 2768, 2820, 2956 |
| Msp20I | TGGCCA | 1 cut(s) | 1278 |
| MspA1I | CMGCKG | 1 cut(s) | 1373 |
| MspCI | CTTAAG | 1 cut(s) | 2482 |
| MspI | CCGG | 1 cut(s) | 2042 |
| MspR9I | CCNGG | 4 cut(s) | 486, 645, 1539, 2279 |
| MunI | CAATTG | 3 cut(s) | 1812, 1841, 2307 |
| Mva1269I | GAATGC | 3 cut(s) | 628, 689, 757 |
| MvaI | CCWGG | 4 cut(s) | 486, 645, 1539, 2279 |
| MvnI | CGCG | 1 cut(s) | 12 |
| MwoI | GCNNNNNNNGC | 4 cut(s) | 103, 287, 1804, 2846 |
| NdeI | CATATG | 4 cut(s) | 244, 574, 1886, 2337 |
| NlaIV | GGNNCC | 5 cut(s) | 824, 825, 1704, 2426, 2727 |
| NmuCI | GTSAC | 2 cut(s) | 2353, 3151 |
| NruI | TCGCGA | 1 cut(s) | 12 |
| NsiI | ATGCAT | 3 cut(s) | 574, 1144, 1249 |
| NspI | RCATGY | 7 cut(s) | 917, 946, 1251, 1388, 2516, 2671, 2955 |
| NspV | TTCGAA | 1 cut(s) | 2070 |
| PaeI | GCATGC | 1 cut(s) | 917 |
| PaeR7I | CTCGAG | 2 cut(s) | 781, 1439 |
| PagI | TCATGA | 2 cut(s) | 526, 1378 |
| PciI | ACATGT | 2 cut(s) | 2512, 2667 |
| PcsI | WCGNNNNNNNCGW | 1 cut(s) | 3152 |
| PctI | GAATGC | 3 cut(s) | 628, 689, 757 |
| PdmI | GAANNNNTTC | 2 cut(s) | 1806, 2200 |
| PflFI | GACNNNGTC | 1 cut(s) | 1470 |
| PinAI | ACCGGT | 1 cut(s) | 2041 |
| PkrI | GCNGC | 7 cut(s) | 99, 102, 105, 280, 1409, 2242, 2950 |
| PleI | GAGTC | 4 cut(s) | 446, 542, 2546, 2994 |
| PmaCI | CACGTG | 1 cut(s) | 2570 |
| PmlI | CACGTG | 1 cut(s) | 2570 |
| PpsI | GAGTC | 4 cut(s) | 446, 542, 2546, 2994 |
| Ppu21I | YACGTR | 2 cut(s) | 771, 2570 |
| PpuMI | RGGWCCY | 1 cut(s) | 823 |
| PscI | ACATGT | 2 cut(s) | 2512, 2667 |
| PsiI | TTATAA | 2 cut(s) | 747, 1242 |
| Psp124BI | GAGCTC | 2 cut(s) | 1440, 2451 |
| Psp5II | RGGWCCY | 1 cut(s) | 823 |
| Psp6I | CCWGG | 4 cut(s) | 484, 643, 1537, 2277 |
| PspCI | CACGTG | 1 cut(s) | 2570 |
| PspGI | CCWGG | 4 cut(s) | 484, 643, 1537, 2277 |
| PspN4I | GGNNCC | 5 cut(s) | 824, 825, 1704, 2426, 2727 |
| PspPI | GGNCC | 7 cut(s) | 482, 823, 1046, 1449, 2039, 2281, 2915 |
| PspPPI | RGGWCCY | 1 cut(s) | 823 |
| PspXI | VCTCGAGB | 1 cut(s) | 1439 |
| PstNI | CAGNNNCTG | 1 cut(s) | 2261 |
| PsuI | RGATCY | 2 cut(s) | 1573, 2872 |
| PsyI | GACNNNGTC | 1 cut(s) | 1470 |
| PvuII | CAGCTG | 1 cut(s) | 1373 |
| RruI | TCGCGA | 1 cut(s) | 12 |
| RseI | CAYNNNNRTG | 9 cut(s) | 477, 597, 734, 918, 1383, 1389, 2768, 2820, 2956 |
| SacI | GAGCTC | 2 cut(s) | 1440, 2451 |
| SalI | GTCGAC | 1 cut(s) | 1580 |
| SatI | GCNGC | 7 cut(s) | 98, 101, 104, 279, 1408, 2241, 2949 |
| Sau96I | GGNCC | 7 cut(s) | 482, 823, 1046, 1449, 2039, 2281, 2915 |
| ScaI | AGTACT | 2 cut(s) | 1157, 1445 |
| SchI | GAGTC | 4 cut(s) | 446, 542, 2547, 2995 |
| ScrFI | CCNGG | 4 cut(s) | 486, 645, 1539, 2279 |
| SduI | GDGCHC | 3 cut(s) | 1440, 2160, 2451 |
| SfaNI | GCATC | 3 cut(s) | 143, 207, 1129 |
| Sfr274I | CTCGAG | 2 cut(s) | 781, 1439 |
| SfuI | TTCGAA | 1 cut(s) | 2070 |
| SinI | GGWCC | 5 cut(s) | 482, 823, 1046, 2039, 2915 |
| SlaI | CTCGAG | 2 cut(s) | 781, 1439 |
| SmiMI | CAYNNNNRTG | 9 cut(s) | 477, 597, 734, 918, 1383, 1389, 2768, 2820, 2956 |
| SmlI | CTYRAG | 7 cut(s) | 221, 781, 1021, 1439, 1958, 2482, 2800 |
| SmoI | CTYRAG | 7 cut(s) | 221, 781, 1021, 1439, 1958, 2482, 2800 |
| SpeI | ACTAGT | 2 cut(s) | 976, 2932 |
| SphI | GCATGC | 1 cut(s) | 917 |
| SsiI | CCGC | 4 cut(s) | 97, 100, 103, 2753 |
| SspI | AATATT | 3 cut(s) | 2171, 2345, 2859 |
| SstI | GAGCTC | 2 cut(s) | 1440, 2451 |
| StyD4I | CCNGG | 4 cut(s) | 484, 643, 1537, 2277 |
| StyI | CCWWGG | 1 cut(s) | 831 |
| TaaI | ACNGT | 5 cut(s) | 969, 1472, 2191, 2293, 2725 |
| TaiI | ACGT | 6 cut(s) | 355, 481, 546, 773, 1825, 2572 |
| TaqI | TCGA | 8 cut(s) | 782, 1321, 1440, 1491, 1581, 2029, 2070, 2638 |
| TauI | GCSGC | 3 cut(s) | 100, 103, 106 |
| TscAI | CASTG | 5 cut(s) | 721, 892, 974, 1475, 2165 |
| TseFI | GTSAC | 2 cut(s) | 2353, 3151 |
| TseI | GCWGC | 4 cut(s) | 278, 1407, 2240, 2948 |
| Tsp45I | GTSAC | 2 cut(s) | 2353, 3151 |
| TspGWI | ACGGA | 3 cut(s) | 97, 1143, 2352 |
| TspRI | CASTG | 5 cut(s) | 721, 892, 974, 1475, 2165 |
| Tth111I | GACNNNGTC | 1 cut(s) | 1470 |
| Vha464I | CTTAAG | 1 cut(s) | 2482 |
| VpaK11BI | GGWCC | 5 cut(s) | 482, 823, 1046, 2039, 2915 |
| XapI | RAATTY | 3 cut(s) | 901, 998, 1213 |
| XbaI | TCTAGA | 3 cut(s) | 584, 2885, 2975 |
| XceI | RCATGY | 7 cut(s) | 917, 946, 1251, 1388, 2516, 2671, 2955 |
| XcmI | CCANNNNNNNNNTGG | 1 cut(s) | 1688 |
| XhoI | CTCGAG | 2 cut(s) | 781, 1439 |
| XmiI | GTMKAC | 2 cut(s) | 1513, 1581 |
| XmnI | GAANNNNTTC | 2 cut(s) | 1806, 2200 |
| ZrmI | AGTACT | 2 cut(s) | 1157, 1445 |
| Zsp2I | ATGCAT | 3 cut(s) | 574, 1144, 1249 |