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| Enzyme | Recognition Site | Cut Count | Positions (bp) |
|---|---|---|---|
| AccB1I | GGYRCC | 1 cut(s) | 321 |
| AccI | GTMKAC | 1 cut(s) | 555 |
| AcsI | RAATTY | 2 cut(s) | 6, 580 |
| AcuI | CTGAAG | 1 cut(s) | 348 |
| AfaI | GTAC | 2 cut(s) | 173, 216 |
| AgsI | TTSAA | 5 cut(s) | 85, 298, 484, 518, 586 |
| AjnI | CCWGG | 1 cut(s) | 462 |
| AluBI | AGCT | 5 cut(s) | 46, 121, 238, 623, 733 |
| AluI | AGCT | 5 cut(s) | 46, 121, 238, 623, 733 |
| Alw26I | GTCTC | 1 cut(s) | 274 |
| ApoI | RAATTY | 2 cut(s) | 6, 580 |
| AseI | ATTAAT | 1 cut(s) | 108 |
| Asp700I | GAANNNNTTC | 2 cut(s) | 173, 293 |
| AspS9I | GGNCC | 2 cut(s) | 245, 428 |
| AsuHPI | GGTGA | 1 cut(s) | 319 |
| AsuII | TTCGAA | 1 cut(s) | 192 |
| AvaII | GGWCC | 2 cut(s) | 245, 428 |
| BanI | GGYRCC | 1 cut(s) | 321 |
| BccI | CCATC | 4 cut(s) | 255, 297, 408, 412 |
| BciT130I | CCWGG | 1 cut(s) | 464 |
| BciVI | GTATCC | 2 cut(s) | 279, 452 |
| BcoDI | GTCTC | 1 cut(s) | 274 |
| BfaI | CTAG | 4 cut(s) | 47, 122, 143, 695 |
| BfuI | GTATCC | 2 cut(s) | 279, 452 |
| BmcAI | AGTACT | 1 cut(s) | 173 |
| Bme1390I | CCNGG | 1 cut(s) | 464 |
| Bme18I | GGWCC | 2 cut(s) | 245, 428 |
| BmgT120I | GGNCC | 2 cut(s) | 245, 428 |
| BmiI | GGNNCC | 1 cut(s) | 323 |
| BmrFI | CCNGG | 1 cut(s) | 464 |
| BmsI | GCATC | 3 cut(s) | 555, 598, 655 |
| Bpu14I | TTCGAA | 1 cut(s) | 192 |
| BpuEI | CTTGAG | 2 cut(s) | 59, 185 |
| BsaJI | CCNNGG | 1 cut(s) | 489 |
| Bse1I | ACTGG | 1 cut(s) | 248 |
| BseBI | CCWGG | 1 cut(s) | 464 |
| BseDI | CCNNGG | 1 cut(s) | 489 |
| BseGI | GGATG | 3 cut(s) | 270, 308, 423 |
| BseNI | ACTGG | 1 cut(s) | 248 |
| BshNI | GGYRCC | 1 cut(s) | 321 |
| BsmAI | GTCTC | 1 cut(s) | 274 |
| Bsp119I | TTCGAA | 1 cut(s) | 192 |
| Bsp1407I | TGTACA | 1 cut(s) | 214 |
| Bsp143I | GATC | 2 cut(s) | 29, 509 |
| BspHI | TCATGA | 1 cut(s) | 198 |
| BspLI | GGNNCC | 1 cut(s) | 323 |
| BspT104I | TTCGAA | 1 cut(s) | 192 |
| BspT107I | GGYRCC | 1 cut(s) | 321 |
| BsrGI | TGTACA | 1 cut(s) | 214 |
| BsrI | ACTGG | 1 cut(s) | 248 |
| BssECI | CCNNGG | 1 cut(s) | 489 |
| BssMI | GATC | 2 cut(s) | 29, 509 |
| BssT1I | CCWWGG | 1 cut(s) | 489 |
| Bst2UI | CCWGG | 1 cut(s) | 464 |
| Bst4CI | ACNGT | 3 cut(s) | 154, 214, 524 |
| Bst6I | CTCTTC | 2 cut(s) | 354, 705 |
| BstAPI | GCANNNNNTGC | 1 cut(s) | 10 |
| BstAUI | TGTACA | 1 cut(s) | 214 |
| BstBI | TTCGAA | 1 cut(s) | 192 |
| BstC8I | GCNNGC | 1 cut(s) | 161 |
| BstDEI | CTNAG | 1 cut(s) | 619 |
| BstF5I | GGATG | 3 cut(s) | 270, 308, 423 |
| BstKTI | GATC | 2 cut(s) | 32, 512 |
| BstMAI | GTCTC | 1 cut(s) | 274 |
| BstMBI | GATC | 2 cut(s) | 29, 509 |
| BstMWI | GCNNNNNNNGC | 1 cut(s) | 10 |
| BstNI | CCWGG | 1 cut(s) | 464 |
| BstSCI | CCNGG | 1 cut(s) | 462 |
| BstXI | CCANNNNNNTGG | 1 cut(s) | 470 |
| BsuI | GTATCC | 2 cut(s) | 279, 452 |
| BtsCI | GGATG | 3 cut(s) | 270, 308, 423 |
| BtsIMutI | CAGTG | 2 cut(s) | 529, 684 |
| Cac8I | GCNNGC | 1 cut(s) | 161 |
| CciI | TCATGA | 1 cut(s) | 198 |
| Cfr13I | GGNCC | 2 cut(s) | 245, 428 |
| CsiI | ACCWGGT | 1 cut(s) | 462 |
| Csp6I | GTAC | 2 cut(s) | 172, 215 |
| CviAII | CATG | 4 cut(s) | 199, 286, 379, 629 |
| CviJI | RGCY | 6 cut(s) | 46, 121, 238, 623, 716, 733 |
| CviKI_1 | RGCY | 6 cut(s) | 46, 121, 238, 623, 716, 733 |
| CviQI | GTAC | 2 cut(s) | 172, 215 |
| DdeI | CTNAG | 1 cut(s) | 619 |
| DpnI | GATC | 2 cut(s) | 31, 511 |
| DpnII | GATC | 2 cut(s) | 29, 509 |
| Eam1104I | CTCTTC | 2 cut(s) | 354, 705 |
| EarI | CTCTTC | 2 cut(s) | 354, 705 |
| Eco130I | CCWWGG | 1 cut(s) | 489 |
| Eco47I | GGWCC | 2 cut(s) | 245, 428 |
| Eco57I | CTGAAG | 1 cut(s) | 348 |
| EcoRII | CCWGG | 1 cut(s) | 462 |
| EcoT14I | CCWWGG | 1 cut(s) | 489 |
| ErhI | CCWWGG | 1 cut(s) | 489 |
| FaeI | CATG | 4 cut(s) | 202, 289, 382, 632 |
| FalI | AAGNNNNNCTT | 4 cut(s) | 222, 254, 645, 677 |
| FatI | CATG | 4 cut(s) | 198, 285, 378, 628 |
| FblI | GTMKAC | 1 cut(s) | 555 |
| FokI | GGATG | 3 cut(s) | 277, 315, 430 |
| FspBI | CTAG | 4 cut(s) | 47, 122, 143, 695 |
| Hin1II | CATG | 4 cut(s) | 202, 289, 382, 632 |
| HinfI | GANTC | 1 cut(s) | 202 |
| HphI | GGTGA | 1 cut(s) | 319 |
| Hpy166II | GTNNAC | 3 cut(s) | 428, 556, 570 |
| Hpy188III | TCNNGA | 3 cut(s) | 38, 199, 695 |
| Hpy8I | GTNNAC | 3 cut(s) | 428, 556, 570 |
| HpyAV | CCTTC | 1 cut(s) | 323 |
| HpyCH4III | ACNGT | 3 cut(s) | 154, 214, 524 |
| HpyCH4V | TGCA | 4 cut(s) | 4, 59, 336, 668 |
| HpyF10VI | GCNNNNNNNGC | 1 cut(s) | 10 |
| HpyF3I | CTNAG | 1 cut(s) | 619 |
| Hsp92II | CATG | 4 cut(s) | 202, 289, 382, 632 |
| Kzo9I | GATC | 2 cut(s) | 29, 509 |
| LmnI | GCTCC | 4 cut(s) | 18, 493, 543, 730 |
| LpnPI | CCDG | 5 cut(s) | 30, 261, 339, 449, 476 |
| LweI | GCATC | 3 cut(s) | 555, 598, 655 |
| MabI | ACCWGGT | 1 cut(s) | 462 |
| MaeI | CTAG | 4 cut(s) | 47, 122, 143, 695 |
| MaeIII | GTNAC | 3 cut(s) | 347, 497, 596 |
| MalI | GATC | 2 cut(s) | 31, 511 |
| MboI | GATC | 2 cut(s) | 29, 509 |
| MboII | GAAGA | 4 cut(s) | 73, 371, 497, 722 |
| MluCI | AATT | 2 cut(s) | 6, 580 |
| MnlI | CCTC | 3 cut(s) | 355, 706, 721 |
| MroXI | GAANNNNTTC | 2 cut(s) | 173, 293 |
| MseI | TTAA | 4 cut(s) | 108, 468, 602, 633 |
| MslI | CAYNNNNRTG | 2 cut(s) | 290, 603 |
| MspR9I | CCNGG | 1 cut(s) | 464 |
| MvaI | CCWGG | 1 cut(s) | 464 |
| MwoI | GCNNNNNNNGC | 1 cut(s) | 10 |
| NdeII | GATC | 2 cut(s) | 29, 509 |
| NlaIII | CATG | 4 cut(s) | 202, 289, 382, 632 |
| NlaIV | GGNNCC | 1 cut(s) | 323 |
| NmuCI | GTSAC | 2 cut(s) | 497, 596 |
| NspV | TTCGAA | 1 cut(s) | 192 |
| PagI | TCATGA | 1 cut(s) | 198 |
| PdmI | GAANNNNTTC | 2 cut(s) | 173, 293 |
| PfeI | GAWTC | 1 cut(s) | 202 |
| PshBI | ATTAAT | 1 cut(s) | 108 |
| Psp6I | CCWGG | 1 cut(s) | 462 |
| PspGI | CCWGG | 1 cut(s) | 462 |
| PspN4I | GGNNCC | 1 cut(s) | 323 |
| PspPI | GGNCC | 2 cut(s) | 245, 428 |
| RsaI | GTAC | 2 cut(s) | 173, 216 |
| RsaNI | GTAC | 2 cut(s) | 172, 215 |
| RseI | CAYNNNNRTG | 2 cut(s) | 290, 603 |
| SaqAI | TTAA | 4 cut(s) | 108, 468, 602, 633 |
| Sau3AI | GATC | 2 cut(s) | 29, 509 |
| Sau96I | GGNCC | 2 cut(s) | 245, 428 |
| ScaI | AGTACT | 1 cut(s) | 173 |
| ScrFI | CCNGG | 1 cut(s) | 464 |
| SexAI | ACCWGGT | 1 cut(s) | 462 |
| SfaNI | GCATC | 3 cut(s) | 555, 598, 655 |
| SfuI | TTCGAA | 1 cut(s) | 192 |
| SinI | GGWCC | 2 cut(s) | 245, 428 |
| SmiMI | CAYNNNNRTG | 2 cut(s) | 290, 603 |
| SmlI | CTYRAG | 2 cut(s) | 38, 164 |
| SmoI | CTYRAG | 2 cut(s) | 38, 164 |
| Sse9I | AATT | 2 cut(s) | 6, 580 |
| SspI | AATATT | 1 cut(s) | 642 |
| SspMI | CTAG | 4 cut(s) | 47, 122, 143, 695 |
| StyD4I | CCNGG | 1 cut(s) | 462 |
| StyI | CCWWGG | 1 cut(s) | 489 |
| TaaI | ACNGT | 3 cut(s) | 154, 214, 524 |
| TaqI | TCGA | 4 cut(s) | 192, 259, 357, 508 |
| TasI | AATT | 2 cut(s) | 6, 580 |
| TatI | WGTACW | 2 cut(s) | 171, 214 |
| TfiI | GAWTC | 1 cut(s) | 202 |
| Tru1I | TTAA | 4 cut(s) | 108, 468, 602, 633 |
| Tru9I | TTAA | 4 cut(s) | 108, 468, 602, 633 |
| TscAI | CASTG | 2 cut(s) | 529, 684 |
| TseFI | GTSAC | 2 cut(s) | 497, 596 |
| Tsp45I | GTSAC | 2 cut(s) | 497, 596 |
| TspDTI | ATGAA | 5 cut(s) | 146, 194, 302, 387, 453 |
| TspRI | CASTG | 2 cut(s) | 529, 684 |
| VpaK11BI | GGWCC | 2 cut(s) | 245, 428 |
| VspI | ATTAAT | 1 cut(s) | 108 |
| XapI | RAATTY | 2 cut(s) | 6, 580 |
| XbaI | TCTAGA | 1 cut(s) | 694 |
| XmiI | GTMKAC | 1 cut(s) | 555 |
| XmnI | GAANNNNTTC | 2 cut(s) | 173, 293 |
| XspI | CTAG | 4 cut(s) | 47, 122, 143, 695 |
| ZrmI | AGTACT | 1 cut(s) | 173 |