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| Enzyme | Recognition Site | Cut Count | Positions (bp) |
|---|---|---|---|
| AccB1I | GGYRCC | 2 cut(s) | 919, 1387 |
| AccBSI | CCGCTC | 1 cut(s) | 1832 |
| AccI | GTMKAC | 1 cut(s) | 930 |
| AccIII | TCCGGA | 1 cut(s) | 1772 |
| AciI | CCGC | 7 cut(s) | 366, 665, 1165, 1375, 1425, 1760, 1830 |
| AclI | AACGTT | 1 cut(s) | 1304 |
| AclWI | GGATC | 2 cut(s) | 68, 1362 |
| AcoI | YGGCCR | 1 cut(s) | 797 |
| AcsI | RAATTY | 8 cut(s) | 50, 401, 505, 851, 1048, 1498, 1510, 1647 |
| AcuI | CTGAAG | 3 cut(s) | 1585, 1743, 1935 |
| AfaI | GTAC | 3 cut(s) | 127, 534, 1779 |
| AfiI | CCNNNNNNNGG | 5 cut(s) | 664, 736, 1043, 1397, 1875 |
| AflIII | ACRYGT | 3 cut(s) | 112, 696, 1849 |
| AgsI | TTSAA | 9 cut(s) | 224, 355, 400, 444, 844, 1123, 1312, 1652, 1709 |
| AhdI | GACNNNNNGTC | 1 cut(s) | 1863 |
| AjnI | CCWGG | 2 cut(s) | 892, 1318 |
| AjuI | GAANNNNNNNTTGG | 2 cut(s) | 452, 484 |
| AluBI | AGCT | 9 cut(s) | 177, 384, 496, 685, 1007, 1144, 1727, 1873, 1913 |
| AluI | AGCT | 9 cut(s) | 177, 384, 496, 685, 1007, 1144, 1727, 1873, 1913 |
| AlwI | GGATC | 2 cut(s) | 68, 1362 |
| Aor13HI | TCCGGA | 1 cut(s) | 1772 |
| AoxI | GGCC | 3 cut(s) | 371, 473, 797 |
| ApeKI | GCWGC | 2 cut(s) | 68, 1343 |
| ApoI | RAATTY | 8 cut(s) | 50, 401, 505, 851, 1048, 1498, 1510, 1647 |
| Asp700I | GAANNNNTTC | 1 cut(s) | 417 |
| AspS9I | GGNCC | 3 cut(s) | 473, 881, 1490 |
| AsuHPI | GGTGA | 3 cut(s) | 524, 805, 1867 |
| AsuII | TTCGAA | 1 cut(s) | 1943 |
| AvaII | GGWCC | 2 cut(s) | 881, 1490 |
| AxyI | CCTNAGG | 1 cut(s) | 1392 |
| BanI | GGYRCC | 2 cut(s) | 919, 1387 |
| BbsI | GAAGAC | 1 cut(s) | 470 |
| BbvI | GCAGC | 2 cut(s) | 55, 1355 |
| BccI | CCATC | 5 cut(s) | 191, 478, 638, 666, 746 |
| BceAI | ACGGC | 1 cut(s) | 460 |
| BciT130I | CCWGG | 2 cut(s) | 894, 1320 |
| BciVI | GTATCC | 1 cut(s) | 592 |
| BclI | TGATCA | 1 cut(s) | 169 |
| BfaI | CTAG | 4 cut(s) | 422, 570, 723, 1358 |
| BfuI | GTATCC | 1 cut(s) | 592 |
| BisI | GCNGC | 3 cut(s) | 69, 1344, 1425 |
| BlsI | GCNGC | 3 cut(s) | 70, 1345, 1426 |
| Bme1390I | CCNGG | 2 cut(s) | 894, 1320 |
| Bme18I | GGWCC | 2 cut(s) | 881, 1490 |
| BmeRI | GACNNNNNGTC | 1 cut(s) | 1863 |
| BmgT120I | GGNCC | 3 cut(s) | 473, 881, 1490 |
| BmiI | GGNNCC | 4 cut(s) | 474, 921, 1389, 1491 |
| BmrFI | CCNGG | 2 cut(s) | 894, 1320 |
| BmrI | ACTGGG | 1 cut(s) | 72 |
| BmsI | GCATC | 5 cut(s) | 271, 426, 964, 1254, 1888 |
| BmuI | ACTGGG | 1 cut(s) | 72 |
| BpiI | GAAGAC | 1 cut(s) | 470 |
| Bpu10I | CCTNAGC | 2 cut(s) | 1560, 1874 |
| Bpu14I | TTCGAA | 1 cut(s) | 1943 |
| BsaAI | YACGTR | 1 cut(s) | 125 |
| BsaJI | CCNNGG | 1 cut(s) | 830 |
| BsaWI | WCCGGW | 2 cut(s) | 1534, 1772 |
| Bsc4I | CCNNNNNNNGG | 5 cut(s) | 664, 736, 1043, 1397, 1875 |
| Bse1I | ACTGG | 2 cut(s) | 78, 1195 |
| Bse21I | CCTNAGG | 1 cut(s) | 1392 |
| Bse3DI | GCAATG | 1 cut(s) | 1235 |
| BseAI | TCCGGA | 1 cut(s) | 1772 |
| BseBI | CCWGG | 2 cut(s) | 894, 1320 |
| BseDI | CCNNGG | 1 cut(s) | 830 |
| BseGI | GGATG | 5 cut(s) | 202, 241, 489, 658, 958 |
| BseLI | CCNNNNNNNGG | 5 cut(s) | 664, 736, 1043, 1397, 1875 |
| BseMI | GCAATG | 1 cut(s) | 1235 |
| BseNI | ACTGG | 2 cut(s) | 78, 1195 |
| BseXI | GCAGC | 2 cut(s) | 55, 1355 |
| BsgI | GTGCAG | 1 cut(s) | 1569 |
| BshFI | GGCC | 3 cut(s) | 373, 475, 799 |
| BshNI | GGYRCC | 2 cut(s) | 919, 1387 |
| BsiSI | CCGG | 2 cut(s) | 1535, 1773 |
| BslFI | GGGAC | 4 cut(s) | 728, 1503, 1851, 1933 |
| BslI | CCNNNNNNNGG | 5 cut(s) | 664, 736, 1043, 1397, 1875 |
| BsmFI | GGGAC | 4 cut(s) | 728, 1503, 1851, 1933 |
| BsnI | GGCC | 3 cut(s) | 373, 475, 799 |
| Bsp119I | TTCGAA | 1 cut(s) | 1943 |
| Bsp13I | TCCGGA | 1 cut(s) | 1772 |
| Bsp143I | GATC | 7 cut(s) | 11, 73, 169, 691, 1173, 1216, 1354 |
| Bsp19I | CCATGG | 1 cut(s) | 830 |
| BspACI | CCGC | 7 cut(s) | 366, 665, 1165, 1375, 1425, 1760, 1830 |
| BspANI | GGCC | 3 cut(s) | 373, 475, 799 |
| BspEI | TCCGGA | 1 cut(s) | 1772 |
| BspHI | TCATGA | 1 cut(s) | 1665 |
| BspLI | GGNNCC | 4 cut(s) | 474, 921, 1389, 1491 |
| BspPI | GGATC | 2 cut(s) | 68, 1362 |
| BspT104I | TTCGAA | 1 cut(s) | 1943 |
| BspT107I | GGYRCC | 2 cut(s) | 919, 1387 |
| BsrBI | CCGCTC | 1 cut(s) | 1832 |
| BsrDI | GCAATG | 1 cut(s) | 1235 |
| BsrI | ACTGG | 2 cut(s) | 78, 1195 |
| BssECI | CCNNGG | 1 cut(s) | 830 |
| BssMI | GATC | 7 cut(s) | 11, 73, 169, 691, 1173, 1216, 1354 |
| BssT1I | CCWWGG | 1 cut(s) | 830 |
| Bst2UI | CCWGG | 2 cut(s) | 894, 1320 |
| Bst4CI | ACNGT | 2 cut(s) | 41, 1957 |
| BstAPI | GCANNNNNTGC | 1 cut(s) | 974 |
| BstBAI | YACGTR | 1 cut(s) | 125 |
| BstBI | TTCGAA | 1 cut(s) | 1943 |
| BstC8I | GCNNGC | 1 cut(s) | 624 |
| BstDEI | CTNAG | 7 cut(s) | 321, 406, 497, 776, 1392, 1560, 1874 |
| BstDSI | CCRYGG | 1 cut(s) | 830 |
| BstEII | GGTNACC | 1 cut(s) | 811 |
| BstENI | CCTNNNNNAGG | 1 cut(s) | 1395 |
| BstF5I | GGATG | 5 cut(s) | 202, 241, 489, 658, 958 |
| BstKTI | GATC | 7 cut(s) | 14, 76, 172, 694, 1176, 1219, 1357 |
| BstMBI | GATC | 7 cut(s) | 11, 73, 169, 691, 1173, 1216, 1354 |
| BstMWI | GCNNNNNNNGC | 3 cut(s) | 746, 974, 1547 |
| BstNI | CCWGG | 2 cut(s) | 894, 1320 |
| BstNSI | RCATGY | 7 cut(s) | 116, 626, 700, 1244, 1568, 1784, 1853 |
| BstPI | GGTNACC | 1 cut(s) | 811 |
| BstSCI | CCNGG | 2 cut(s) | 892, 1318 |
| BstV1I | GCAGC | 2 cut(s) | 55, 1355 |
| BstV2I | GAAGAC | 1 cut(s) | 470 |
| BstX2I | RGATCY | 1 cut(s) | 1354 |
| BstYI | RGATCY | 1 cut(s) | 1354 |
| Bsu36I | CCTNAGG | 1 cut(s) | 1392 |
| BsuI | GTATCC | 1 cut(s) | 592 |
| BsuRI | GGCC | 3 cut(s) | 373, 475, 799 |
| BtgI | CCRYGG | 1 cut(s) | 830 |
| BtsCI | GGATG | 5 cut(s) | 202, 241, 489, 658, 958 |
| BtsI | GCAGTG | 2 cut(s) | 1102, 1557 |
| BtsIMutI | CAGTG | 3 cut(s) | 1102, 1557, 1609 |
| Cac8I | GCNNGC | 1 cut(s) | 624 |
| CciI | TCATGA | 1 cut(s) | 1665 |
| Cfr13I | GGNCC | 3 cut(s) | 473, 881, 1490 |
| Csp6I | GTAC | 3 cut(s) | 126, 533, 1778 |
| CspCI | CAANNNNNGTGG | 4 cut(s) | 350, 385, 816, 851 |
| CviQI | GTAC | 3 cut(s) | 126, 533, 1778 |
| DdeI | CTNAG | 7 cut(s) | 321, 406, 497, 776, 1392, 1560, 1874 |
| DpnI | GATC | 7 cut(s) | 13, 75, 171, 693, 1175, 1218, 1356 |
| DpnII | GATC | 7 cut(s) | 11, 73, 169, 691, 1173, 1216, 1354 |
| DraI | TTTAAA | 2 cut(s) | 939, 1516 |
| DriI | GACNNNNNGTC | 1 cut(s) | 1863 |
| EaeI | YGGCCR | 1 cut(s) | 797 |
| Eam1105I | GACNNNNNGTC | 1 cut(s) | 1863 |
| Eco130I | CCWWGG | 1 cut(s) | 830 |
| Eco47I | GGWCC | 2 cut(s) | 881, 1490 |
| Eco57I | CTGAAG | 3 cut(s) | 1585, 1743, 1935 |
| Eco81I | CCTNAGG | 1 cut(s) | 1392 |
| Eco91I | GGTNACC | 1 cut(s) | 811 |
| EcoNI | CCTNNNNNAGG | 1 cut(s) | 1395 |
| EcoO65I | GGTNACC | 1 cut(s) | 811 |
| EcoRI | GAATTC | 1 cut(s) | 505 |
| EcoRII | CCWGG | 2 cut(s) | 892, 1318 |
| EcoT14I | CCWWGG | 1 cut(s) | 830 |
| EcoT22I | ATGCAT | 1 cut(s) | 979 |
| ErhI | CCWWGG | 1 cut(s) | 830 |
| FalI | AAGNNNNNCTT | 2 cut(s) | 1875, 1907 |
| FaqI | GGGAC | 4 cut(s) | 728, 1503, 1851, 1933 |
| FauI | CCCGC | 1 cut(s) | 359 |
| FauNDI | CATATG | 1 cut(s) | 1042 |
| FbaI | TGATCA | 1 cut(s) | 169 |
| FblI | GTMKAC | 1 cut(s) | 930 |
| Fnu4HI | GCNGC | 3 cut(s) | 69, 1344, 1425 |
| FokI | GGATG | 5 cut(s) | 209, 248, 496, 645, 965 |
| Fsp4HI | GCNGC | 3 cut(s) | 69, 1344, 1425 |
| FspBI | CTAG | 4 cut(s) | 422, 570, 723, 1358 |
| GluI | GCNGC | 3 cut(s) | 69, 1344, 1425 |
| HaeIII | GGCC | 3 cut(s) | 373, 475, 799 |
| HapII | CCGG | 2 cut(s) | 1535, 1773 |
| HincII | GTYRAC | 1 cut(s) | 37 |
| HindII | GTYRAC | 1 cut(s) | 37 |
| HindIII | AAGCTT | 4 cut(s) | 382, 494, 683, 1725 |
| HinfI | GANTC | 3 cut(s) | 668, 802, 1791 |
| HpaII | CCGG | 2 cut(s) | 1535, 1773 |
| HphI | GGTGA | 3 cut(s) | 524, 805, 1867 |
| Hpy166II | GTNNAC | 6 cut(s) | 37, 110, 318, 650, 931, 1847 |
| Hpy188I | TCNGA | 5 cut(s) | 16, 341, 522, 706, 1114 |
| Hpy188III | TCNNGA | 4 cut(s) | 422, 1666, 1706, 1773 |
| Hpy8I | GTNNAC | 6 cut(s) | 37, 110, 318, 650, 931, 1847 |
| HpyAV | CCTTC | 6 cut(s) | 450, 684, 740, 1391, 1441, 1703 |
| HpyCH4III | ACNGT | 2 cut(s) | 41, 1957 |
| HpyCH4IV | ACGT | 2 cut(s) | 124, 1304 |
| HpyF10VI | GCNNNNNNNGC | 3 cut(s) | 746, 974, 1547 |
| HpyF3I | CTNAG | 7 cut(s) | 321, 406, 497, 776, 1392, 1560, 1874 |
| HpySE526I | ACGT | 2 cut(s) | 124, 1304 |
| Kpn2I | TCCGGA | 1 cut(s) | 1772 |
| Ksp22I | TGATCA | 1 cut(s) | 169 |
| Kzo9I | GATC | 7 cut(s) | 11, 73, 169, 691, 1173, 1216, 1354 |
| LmnI | GCTCC | 1 cut(s) | 1837 |
| Lsp1109I | GCAGC | 2 cut(s) | 55, 1355 |
| LweI | GCATC | 5 cut(s) | 271, 426, 964, 1254, 1888 |
| MaeI | CTAG | 4 cut(s) | 422, 570, 723, 1358 |
| MaeII | ACGT | 2 cut(s) | 124, 1304 |
| MaeIII | GTNAC | 4 cut(s) | 181, 811, 1554, 1855 |
| MalI | GATC | 7 cut(s) | 13, 75, 171, 693, 1175, 1218, 1356 |
| MbiI | CCGCTC | 1 cut(s) | 1832 |
| MboI | GATC | 7 cut(s) | 11, 73, 169, 691, 1173, 1216, 1354 |
| MboII | GAAGA | 8 cut(s) | 21, 290, 472, 475, 591, 650, 653, 1591 |
| MfeI | CAATTG | 1 cut(s) | 1623 |
| MflI | RGATCY | 1 cut(s) | 1354 |
| MlyI | GAGTC | 2 cut(s) | 662, 1785 |
| MmeI | TCCRAC | 3 cut(s) | 255, 1208, 1768 |
| MnlI | CCTC | 6 cut(s) | 130, 225, 774, 958, 1732, 1806 |
| Mph1103I | ATGCAT | 1 cut(s) | 979 |
| MroI | TCCGGA | 1 cut(s) | 1772 |
| MroXI | GAANNNNTTC | 1 cut(s) | 417 |
| MseI | TTAA | 8 cut(s) | 117, 132, 872, 938, 1001, 1151, 1485, 1515 |
| MslI | CAYNNNNRTG | 1 cut(s) | 835 |
| MspA1I | CMGCKG | 2 cut(s) | 665, 1913 |
| MspI | CCGG | 2 cut(s) | 1535, 1773 |
| MspR9I | CCNGG | 2 cut(s) | 894, 1320 |
| MunI | CAATTG | 1 cut(s) | 1623 |
| MvaI | CCWGG | 2 cut(s) | 894, 1320 |
| MwoI | GCNNNNNNNGC | 3 cut(s) | 746, 974, 1547 |
| NcoI | CCATGG | 1 cut(s) | 830 |
| NdeI | CATATG | 1 cut(s) | 1042 |
| NdeII | GATC | 7 cut(s) | 11, 73, 169, 691, 1173, 1216, 1354 |
| NlaIV | GGNNCC | 4 cut(s) | 474, 921, 1389, 1491 |
| NmeAIII | GCCGAG | 1 cut(s) | 310 |
| NmuCI | GTSAC | 2 cut(s) | 811, 1855 |
| NsiI | ATGCAT | 1 cut(s) | 979 |
| NspI | RCATGY | 7 cut(s) | 116, 626, 700, 1244, 1568, 1784, 1853 |
| NspV | TTCGAA | 1 cut(s) | 1943 |
| PaeI | GCATGC | 1 cut(s) | 626 |
| PagI | TCATGA | 1 cut(s) | 1665 |
| PciI | ACATGT | 3 cut(s) | 112, 696, 1849 |
| PdmI | GAANNNNTTC | 1 cut(s) | 417 |
| PfeI | GAWTC | 1 cut(s) | 802 |
| PfoI | TCCNGGA | 1 cut(s) | 1318 |
| PkrI | GCNGC | 3 cut(s) | 70, 1345, 1426 |
| PleI | GAGTC | 2 cut(s) | 662, 1785 |
| PpsI | GAGTC | 2 cut(s) | 662, 1785 |
| Ppu21I | YACGTR | 1 cut(s) | 125 |
| PscI | ACATGT | 3 cut(s) | 112, 696, 1849 |
| Psp1406I | AACGTT | 1 cut(s) | 1304 |
| Psp6I | CCWGG | 2 cut(s) | 892, 1318 |
| PspEI | GGTNACC | 1 cut(s) | 811 |
| PspGI | CCWGG | 2 cut(s) | 892, 1318 |
| PspN4I | GGNNCC | 4 cut(s) | 474, 921, 1389, 1491 |
| PspPI | GGNCC | 3 cut(s) | 473, 881, 1490 |
| PsuI | RGATCY | 1 cut(s) | 1354 |
| PvuII | CAGCTG | 1 cut(s) | 1913 |
| RsaI | GTAC | 3 cut(s) | 127, 534, 1779 |
| RsaNI | GTAC | 3 cut(s) | 126, 533, 1778 |
| RseI | CAYNNNNRTG | 1 cut(s) | 835 |
| SaqAI | TTAA | 8 cut(s) | 117, 132, 872, 938, 1001, 1151, 1485, 1515 |
| SatI | GCNGC | 3 cut(s) | 69, 1344, 1425 |
| Sau3AI | GATC | 7 cut(s) | 11, 73, 169, 691, 1173, 1216, 1354 |
| Sau96I | GGNCC | 3 cut(s) | 473, 881, 1490 |
| SchI | GAGTC | 2 cut(s) | 662, 1785 |
| ScrFI | CCNGG | 2 cut(s) | 894, 1320 |
| SfaNI | GCATC | 5 cut(s) | 271, 426, 964, 1254, 1888 |
| SfuI | TTCGAA | 1 cut(s) | 1943 |
| SinI | GGWCC | 2 cut(s) | 881, 1490 |
| SmiMI | CAYNNNNRTG | 1 cut(s) | 835 |
| SphI | GCATGC | 1 cut(s) | 626 |
| SsiI | CCGC | 7 cut(s) | 366, 665, 1165, 1375, 1425, 1760, 1830 |
| SspMI | CTAG | 4 cut(s) | 422, 570, 723, 1358 |
| StyD4I | CCNGG | 2 cut(s) | 892, 1318 |
| StyI | CCWWGG | 1 cut(s) | 830 |
| TaaI | ACNGT | 2 cut(s) | 41, 1957 |
| TaiI | ACGT | 2 cut(s) | 127, 1307 |
| TaqI | TCGA | 2 cut(s) | 963, 1943 |
| TatI | WGTACW | 1 cut(s) | 1777 |
| TauI | GCSGC | 1 cut(s) | 1427 |
| TfiI | GAWTC | 1 cut(s) | 802 |
| Tru1I | TTAA | 8 cut(s) | 117, 132, 872, 938, 1001, 1151, 1485, 1515 |
| Tru9I | TTAA | 8 cut(s) | 117, 132, 872, 938, 1001, 1151, 1485, 1515 |
| TscAI | CASTG | 3 cut(s) | 1102, 1557, 1609 |
| TseFI | GTSAC | 2 cut(s) | 811, 1855 |
| TseI | GCWGC | 2 cut(s) | 68, 1343 |
| Tsp45I | GTSAC | 2 cut(s) | 811, 1855 |
| TspRI | CASTG | 3 cut(s) | 1102, 1557, 1609 |
| VpaK11BI | GGWCC | 2 cut(s) | 881, 1490 |
| XagI | CCTNNNNNAGG | 1 cut(s) | 1395 |
| XapI | RAATTY | 8 cut(s) | 50, 401, 505, 851, 1048, 1498, 1510, 1647 |
| XbaI | TCTAGA | 1 cut(s) | 421 |
| XceI | RCATGY | 7 cut(s) | 116, 626, 700, 1244, 1568, 1784, 1853 |
| XmiI | GTMKAC | 1 cut(s) | 930 |
| XmnI | GAANNNNTTC | 1 cut(s) | 417 |
| XspI | CTAG | 4 cut(s) | 422, 570, 723, 1358 |
| Zsp2I | ATGCAT | 1 cut(s) | 979 |