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| Enzyme | Recognition Site | Cut Count | Positions (bp) |
|---|---|---|---|
| AanI | TTATAA | 1 cut(s) | 201 |
| AclWI | GGATC | 2 cut(s) | 174, 387 |
| AfaI | GTAC | 2 cut(s) | 392, 403 |
| AfiI | CCNNNNNNNGG | 1 cut(s) | 290 |
| AgsI | TTSAA | 7 cut(s) | 124, 260, 361, 442, 448, 497, 503 |
| AjnI | CCWGG | 2 cut(s) | 283, 394 |
| AluBI | AGCT | 3 cut(s) | 49, 331, 418 |
| AluI | AGCT | 3 cut(s) | 49, 331, 418 |
| AlwI | GGATC | 2 cut(s) | 174, 387 |
| ArsI | GACNNNNNNTTYG | 4 cut(s) | 427, 459, 482, 514 |
| BaeI | ACNNNNGTAYC | 2 cut(s) | 374, 407 |
| BbsI | GAAGAC | 2 cut(s) | 348, 413 |
| BccI | CCATC | 2 cut(s) | 283, 368 |
| BcgI | CGANNNNNNTGC | 2 cut(s) | 68, 102 |
| BciT130I | CCWGG | 2 cut(s) | 285, 396 |
| BfaI | CTAG | 2 cut(s) | 50, 56 |
| BfmI | CTRYAG | 1 cut(s) | 270 |
| Bme1390I | CCNGG | 2 cut(s) | 285, 396 |
| BmiI | GGNNCC | 2 cut(s) | 225, 282 |
| BmrFI | CCNGG | 2 cut(s) | 285, 396 |
| BmsI | GCATC | 3 cut(s) | 6, 460, 515 |
| BpiI | GAAGAC | 2 cut(s) | 348, 413 |
| BpuEI | CTTGAG | 1 cut(s) | 53 |
| BsaBI | GATNNNNATC | 1 cut(s) | 378 |
| BsaJI | CCNNGG | 2 cut(s) | 284, 394 |
| Bsc4I | CCNNNNNNNGG | 1 cut(s) | 290 |
| Bse3DI | GCAATG | 1 cut(s) | 246 |
| Bse8I | GATNNNNATC | 1 cut(s) | 378 |
| BseBI | CCWGG | 2 cut(s) | 285, 396 |
| BseDI | CCNNGG | 2 cut(s) | 284, 394 |
| BseGI | GGATG | 4 cut(s) | 21, 294, 331, 379 |
| BseJI | GATNNNNATC | 1 cut(s) | 378 |
| BseLI | CCNNNNNNNGG | 1 cut(s) | 290 |
| BseMI | GCAATG | 1 cut(s) | 246 |
| BslI | CCNNNNNNNGG | 1 cut(s) | 290 |
| Bsp143I | GATC | 3 cut(s) | 32, 166, 379 |
| BspHI | TCATGA | 1 cut(s) | 550 |
| BspLI | GGNNCC | 2 cut(s) | 225, 282 |
| BspPI | GGATC | 2 cut(s) | 174, 387 |
| BsrDI | GCAATG | 1 cut(s) | 246 |
| BssECI | CCNNGG | 2 cut(s) | 284, 394 |
| BssMI | GATC | 3 cut(s) | 32, 166, 379 |
| Bst2UI | CCWGG | 2 cut(s) | 285, 396 |
| Bst4CI | ACNGT | 1 cut(s) | 271 |
| BstC8I | GCNNGC | 3 cut(s) | 21, 475, 530 |
| BstF5I | GGATG | 4 cut(s) | 21, 294, 331, 379 |
| BstKTI | GATC | 3 cut(s) | 35, 169, 382 |
| BstMBI | GATC | 3 cut(s) | 32, 166, 379 |
| BstNI | CCWGG | 2 cut(s) | 285, 396 |
| BstNSI | RCATGY | 1 cut(s) | 23 |
| BstSCI | CCNGG | 2 cut(s) | 283, 394 |
| BstSFI | CTRYAG | 1 cut(s) | 270 |
| BstV2I | GAAGAC | 2 cut(s) | 348, 413 |
| BtsCI | GGATG | 4 cut(s) | 21, 294, 331, 379 |
| Cac8I | GCNNGC | 3 cut(s) | 21, 475, 530 |
| CciI | TCATGA | 1 cut(s) | 550 |
| Csp6I | GTAC | 2 cut(s) | 391, 402 |
| CviAII | CATG | 6 cut(s) | 12, 20, 218, 458, 513, 551 |
| CviJI | RGCY | 4 cut(s) | 49, 309, 331, 418 |
| CviKI_1 | RGCY | 4 cut(s) | 49, 309, 331, 418 |
| CviQI | GTAC | 2 cut(s) | 391, 402 |
| DpnI | GATC | 3 cut(s) | 34, 168, 381 |
| DpnII | GATC | 3 cut(s) | 32, 166, 379 |
| EcoRII | CCWGG | 2 cut(s) | 283, 394 |
| EcoT22I | ATGCAT | 1 cut(s) | 21 |
| FaeI | CATG | 6 cut(s) | 15, 23, 221, 461, 516, 554 |
| FatI | CATG | 6 cut(s) | 11, 19, 217, 457, 512, 550 |
| FokI | GGATG | 4 cut(s) | 28, 301, 338, 386 |
| FspBI | CTAG | 2 cut(s) | 50, 56 |
| Hin1II | CATG | 6 cut(s) | 15, 23, 221, 461, 516, 554 |
| HinfI | GANTC | 5 cut(s) | 80, 260, 344, 430, 485 |
| Hpy188I | TCNGA | 6 cut(s) | 265, 340, 429, 435, 490, 539 |
| Hpy188III | TCNNGA | 2 cut(s) | 551, 570 |
| HpyAV | CCTTC | 2 cut(s) | 448, 503 |
| HpyCH4III | ACNGT | 1 cut(s) | 271 |
| HpyCH4V | TGCA | 2 cut(s) | 19, 239 |
| Hsp92II | CATG | 6 cut(s) | 15, 23, 221, 461, 516, 554 |
| Kzo9I | GATC | 3 cut(s) | 32, 166, 379 |
| LpnPI | CCDG | 4 cut(s) | 270, 297, 381, 408 |
| LweI | GCATC | 3 cut(s) | 6, 460, 515 |
| MaeI | CTAG | 2 cut(s) | 50, 56 |
| MaeIII | GTNAC | 1 cut(s) | 131 |
| MalI | GATC | 3 cut(s) | 34, 168, 381 |
| MboI | GATC | 3 cut(s) | 32, 166, 379 |
| MboII | GAAGA | 3 cut(s) | 42, 353, 418 |
| MluCI | AATT | 2 cut(s) | 442, 497 |
| MlyI | GAGTC | 2 cut(s) | 89, 338 |
| MmeI | TCCRAC | 1 cut(s) | 133 |
| MnlI | CCTC | 4 cut(s) | 133, 204, 316, 364 |
| Mph1103I | ATGCAT | 1 cut(s) | 21 |
| MseI | TTAA | 2 cut(s) | 162, 189 |
| MspR9I | CCNGG | 2 cut(s) | 285, 396 |
| MvaI | CCWGG | 2 cut(s) | 285, 396 |
| NdeII | GATC | 3 cut(s) | 32, 166, 379 |
| NlaIII | CATG | 6 cut(s) | 15, 23, 221, 461, 516, 554 |
| NlaIV | GGNNCC | 2 cut(s) | 225, 282 |
| NmeAIII | GCCGAG | 1 cut(s) | 103 |
| NsiI | ATGCAT | 1 cut(s) | 21 |
| NspI | RCATGY | 1 cut(s) | 23 |
| PaeI | GCATGC | 1 cut(s) | 23 |
| PagI | TCATGA | 1 cut(s) | 550 |
| PfeI | GAWTC | 3 cut(s) | 260, 430, 485 |
| PleI | GAGTC | 2 cut(s) | 88, 338 |
| PpsI | GAGTC | 2 cut(s) | 88, 338 |
| PsiI | TTATAA | 1 cut(s) | 201 |
| Psp6I | CCWGG | 2 cut(s) | 283, 394 |
| PspGI | CCWGG | 2 cut(s) | 283, 394 |
| PspN4I | GGNNCC | 2 cut(s) | 225, 282 |
| RsaI | GTAC | 2 cut(s) | 392, 403 |
| RsaNI | GTAC | 2 cut(s) | 391, 402 |
| SaqAI | TTAA | 2 cut(s) | 162, 189 |
| Sau3AI | GATC | 3 cut(s) | 32, 166, 379 |
| SchI | GAGTC | 2 cut(s) | 89, 338 |
| ScrFI | CCNGG | 2 cut(s) | 285, 396 |
| SfaNI | GCATC | 3 cut(s) | 6, 460, 515 |
| SfcI | CTRYAG | 1 cut(s) | 270 |
| SmlI | CTYRAG | 1 cut(s) | 68 |
| SmoI | CTYRAG | 1 cut(s) | 68 |
| SphI | GCATGC | 1 cut(s) | 23 |
| Sse9I | AATT | 2 cut(s) | 442, 497 |
| SspMI | CTAG | 2 cut(s) | 50, 56 |
| StyD4I | CCNGG | 2 cut(s) | 283, 394 |
| TaaI | ACNGT | 1 cut(s) | 271 |
| TaqII | GACCGA | 1 cut(s) | 537 |
| TasI | AATT | 2 cut(s) | 442, 497 |
| TfiI | GAWTC | 3 cut(s) | 260, 430, 485 |
| Tru1I | TTAA | 2 cut(s) | 162, 189 |
| Tru9I | TTAA | 2 cut(s) | 162, 189 |
| TspDTI | ATGAA | 1 cut(s) | 257 |
| TspGWI | ACGGA | 1 cut(s) | 152 |
| XceI | RCATGY | 1 cut(s) | 23 |
| XspI | CTAG | 2 cut(s) | 50, 56 |
| Zsp2I | ATGCAT | 1 cut(s) | 21 |