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| Enzyme | Recognition Site | Cut Count | Positions (bp) |
|---|---|---|---|
| AanI | TTATAA | 1 cut(s) | 293 |
| AccB1I | GGYRCC | 1 cut(s) | 688 |
| AccI | GTMKAC | 2 cut(s) | 312, 381 |
| AclI | AACGTT | 1 cut(s) | 800 |
| AclWI | GGATC | 4 cut(s) | 258, 689, 860, 873 |
| AcsI | RAATTY | 1 cut(s) | 465 |
| AcyI | GRCGYC | 1 cut(s) | 372 |
| AfaI | GTAC | 2 cut(s) | 364, 594 |
| AfiI | CCNNNNNNNGG | 1 cut(s) | 174 |
| AflIII | ACRYGT | 1 cut(s) | 454 |
| AgsI | TTSAA | 4 cut(s) | 163, 343, 479, 796 |
| AjuI | GAANNNNNNNTTGG | 4 cut(s) | 45, 77, 118, 150 |
| AloI | GAACNNNNNNTCC | 2 cut(s) | 913, 945 |
| AluBI | AGCT | 4 cut(s) | 449, 710, 719, 740 |
| AluI | AGCT | 4 cut(s) | 449, 710, 719, 740 |
| AlwI | GGATC | 4 cut(s) | 258, 689, 860, 873 |
| AoxI | GGCC | 1 cut(s) | 106 |
| ApeKI | GCWGC | 2 cut(s) | 710, 904 |
| ApoI | RAATTY | 1 cut(s) | 465 |
| AspLEI | GCGC | 1 cut(s) | 928 |
| AspS9I | GGNCC | 1 cut(s) | 107 |
| AsuC2I | CCSGG | 1 cut(s) | 176 |
| AsuHPI | GGTGA | 3 cut(s) | 415, 780, 881 |
| AxyI | CCTNAGG | 1 cut(s) | 765 |
| BaeGI | GKGCMC | 1 cut(s) | 521 |
| BamHI | GGATCC | 1 cut(s) | 865 |
| BanI | GGYRCC | 1 cut(s) | 688 |
| BbsI | GAAGAC | 1 cut(s) | 271 |
| BbvI | GCAGC | 2 cut(s) | 697, 891 |
| BccI | CCATC | 5 cut(s) | 91, 494, 613, 626, 656 |
| BceAI | ACGGC | 1 cut(s) | 939 |
| BciVI | GTATCC | 2 cut(s) | 194, 324 |
| BcnI | CCSGG | 1 cut(s) | 176 |
| BfaI | CTAG | 5 cut(s) | 102, 366, 389, 645, 938 |
| BfuI | GTATCC | 2 cut(s) | 194, 324 |
| BisI | GCNGC | 2 cut(s) | 711, 905 |
| BlsI | GCNGC | 2 cut(s) | 712, 906 |
| BmcAI | AGTACT | 1 cut(s) | 364 |
| Bme1390I | CCNGG | 1 cut(s) | 176 |
| BmgT120I | GGNCC | 1 cut(s) | 107 |
| BmiI | GGNNCC | 2 cut(s) | 690, 867 |
| BmrFI | CCNGG | 1 cut(s) | 176 |
| BmsI | GCATC | 4 cut(s) | 214, 481, 833, 937 |
| BpiI | GAAGAC | 1 cut(s) | 271 |
| BpuMI | CCSGG | 1 cut(s) | 176 |
| Bsa29I | ATCGAT | 1 cut(s) | 489 |
| BsaBI | GATNNNNATC | 1 cut(s) | 636 |
| BsaHI | GRCGYC | 1 cut(s) | 372 |
| BsaJI | CCNNGG | 3 cut(s) | 246, 260, 535 |
| Bsc4I | CCNNNNNNNGG | 1 cut(s) | 174 |
| Bse1I | ACTGG | 1 cut(s) | 503 |
| Bse21I | CCTNAGG | 1 cut(s) | 765 |
| Bse3DI | GCAATG | 1 cut(s) | 234 |
| Bse8I | GATNNNNATC | 1 cut(s) | 636 |
| BseCI | ATCGAT | 1 cut(s) | 489 |
| BseDI | CCNNGG | 3 cut(s) | 246, 260, 535 |
| BseGI | GGATG | 3 cut(s) | 102, 847, 928 |
| BseJI | GATNNNNATC | 1 cut(s) | 636 |
| BseLI | CCNNNNNNNGG | 1 cut(s) | 174 |
| BseMI | GCAATG | 1 cut(s) | 234 |
| BseNI | ACTGG | 1 cut(s) | 503 |
| BseRI | GAGGAG | 1 cut(s) | 569 |
| BseSI | GKGCMC | 1 cut(s) | 521 |
| BseXI | GCAGC | 2 cut(s) | 697, 891 |
| BshFI | GGCC | 1 cut(s) | 108 |
| BshNI | GGYRCC | 1 cut(s) | 688 |
| BshVI | ATCGAT | 1 cut(s) | 489 |
| BsiSI | CCGG | 1 cut(s) | 175 |
| BslFI | GGGAC | 2 cut(s) | 191, 832 |
| BslI | CCNNNNNNNGG | 1 cut(s) | 174 |
| BsmFI | GGGAC | 2 cut(s) | 191, 832 |
| BsmI | GAATGC | 1 cut(s) | 907 |
| BsnI | GGCC | 1 cut(s) | 108 |
| Bsp1286I | GDGCHC | 1 cut(s) | 521 |
| Bsp143I | GATC | 4 cut(s) | 250, 681, 865, 946 |
| Bsp19I | CCATGG | 1 cut(s) | 535 |
| BspANI | GGCC | 1 cut(s) | 108 |
| BspDI | ATCGAT | 1 cut(s) | 489 |
| BspLI | GGNNCC | 2 cut(s) | 690, 867 |
| BspPI | GGATC | 4 cut(s) | 258, 689, 860, 873 |
| BspT107I | GGYRCC | 1 cut(s) | 688 |
| BsrDI | GCAATG | 1 cut(s) | 234 |
| BsrI | ACTGG | 1 cut(s) | 503 |
| BssECI | CCNNGG | 3 cut(s) | 246, 260, 535 |
| BssMI | GATC | 4 cut(s) | 250, 681, 865, 946 |
| BssNI | GRCGYC | 1 cut(s) | 372 |
| BssT1I | CCWWGG | 3 cut(s) | 246, 260, 535 |
| Bst4CI | ACNGT | 3 cut(s) | 182, 792, 885 |
| Bst6I | CTCTTC | 4 cut(s) | 546, 746, 851, 871 |
| BstACI | GRCGYC | 1 cut(s) | 372 |
| BstAPI | GCANNNNNTGC | 1 cut(s) | 710 |
| BstDEI | CTNAG | 1 cut(s) | 765 |
| BstDSI | CCRYGG | 1 cut(s) | 535 |
| BstF5I | GGATG | 3 cut(s) | 102, 847, 928 |
| BstHHI | GCGC | 1 cut(s) | 928 |
| BstKTI | GATC | 4 cut(s) | 253, 684, 868, 949 |
| BstMBI | GATC | 4 cut(s) | 250, 681, 865, 946 |
| BstMWI | GCNNNNNNNGC | 2 cut(s) | 710, 716 |
| BstNSI | RCATGY | 1 cut(s) | 428 |
| BstSCI | CCNGG | 1 cut(s) | 174 |
| BstSLI | GKGCMC | 1 cut(s) | 521 |
| BstV1I | GCAGC | 2 cut(s) | 697, 891 |
| BstV2I | GAAGAC | 1 cut(s) | 271 |
| BstX2I | RGATCY | 1 cut(s) | 865 |
| BstXI | CCANNNNNNTGG | 1 cut(s) | 149 |
| BstYI | RGATCY | 1 cut(s) | 865 |
| Bsu15I | ATCGAT | 1 cut(s) | 489 |
| Bsu36I | CCTNAGG | 1 cut(s) | 765 |
| BsuI | GTATCC | 2 cut(s) | 194, 324 |
| BsuRI | GGCC | 1 cut(s) | 108 |
| BsuTUI | ATCGAT | 1 cut(s) | 489 |
| BtgI | CCRYGG | 1 cut(s) | 535 |
| BtgZI | GCGATG | 1 cut(s) | 681 |
| BtsCI | GGATG | 3 cut(s) | 102, 847, 928 |
| CfoI | GCGC | 1 cut(s) | 928 |
| Cfr13I | GGNCC | 1 cut(s) | 107 |
| ClaI | ATCGAT | 1 cut(s) | 489 |
| CseI | GACGC | 1 cut(s) | 361 |
| Csp6I | GTAC | 2 cut(s) | 363, 593 |
| CviAII | CATG | 5 cut(s) | 143, 425, 536, 563, 685 |
| CviQI | GTAC | 2 cut(s) | 363, 593 |
| DdeI | CTNAG | 1 cut(s) | 765 |
| DpnI | GATC | 4 cut(s) | 252, 683, 867, 948 |
| DpnII | GATC | 4 cut(s) | 250, 681, 865, 946 |
| Eam1104I | CTCTTC | 4 cut(s) | 546, 746, 851, 871 |
| EarI | CTCTTC | 4 cut(s) | 546, 746, 851, 871 |
| Eco130I | CCWWGG | 3 cut(s) | 246, 260, 535 |
| Eco81I | CCTNAGG | 1 cut(s) | 765 |
| EcoT14I | CCWWGG | 3 cut(s) | 246, 260, 535 |
| ErhI | CCWWGG | 3 cut(s) | 246, 260, 535 |
| FaeI | CATG | 5 cut(s) | 146, 428, 539, 566, 688 |
| FalI | AAGNNNNNCTT | 2 cut(s) | 118, 150 |
| FaqI | GGGAC | 2 cut(s) | 191, 832 |
| FatI | CATG | 5 cut(s) | 142, 424, 535, 562, 684 |
| FauNDI | CATATG | 1 cut(s) | 654 |
| FblI | GTMKAC | 2 cut(s) | 312, 381 |
| Fnu4HI | GCNGC | 2 cut(s) | 711, 905 |
| FokI | GGATG | 3 cut(s) | 109, 854, 915 |
| Fsp4HI | GCNGC | 2 cut(s) | 711, 905 |
| FspBI | CTAG | 5 cut(s) | 102, 366, 389, 645, 938 |
| GlaI | GCGC | 1 cut(s) | 927 |
| GluI | GCNGC | 2 cut(s) | 711, 905 |
| HaeIII | GGCC | 1 cut(s) | 108 |
| HapII | CCGG | 1 cut(s) | 175 |
| HgaI | GACGC | 1 cut(s) | 361 |
| HhaI | GCGC | 1 cut(s) | 928 |
| Hin1I | GRCGYC | 1 cut(s) | 372 |
| Hin1II | CATG | 5 cut(s) | 146, 428, 539, 566, 688 |
| Hin6I | GCGC | 1 cut(s) | 926 |
| HinP1I | GCGC | 1 cut(s) | 926 |
| HincII | GTYRAC | 1 cut(s) | 157 |
| HindII | GTYRAC | 1 cut(s) | 157 |
| HinfI | GANTC | 1 cut(s) | 29 |
| HpaII | CCGG | 1 cut(s) | 175 |
| HphI | GGTGA | 3 cut(s) | 415, 780, 881 |
| Hpy166II | GTNNAC | 4 cut(s) | 157, 313, 382, 396 |
| Hpy188I | TCNGA | 5 cut(s) | 13, 28, 82, 188, 198 |
| Hpy188III | TCNNGA | 2 cut(s) | 65, 479 |
| Hpy8I | GTNNAC | 4 cut(s) | 157, 313, 382, 396 |
| HpyAV | CCTTC | 3 cut(s) | 665, 832, 894 |
| HpyCH4III | ACNGT | 3 cut(s) | 182, 792, 885 |
| HpyCH4IV | ACGT | 2 cut(s) | 456, 800 |
| HpyCH4V | TGCA | 8 cut(s) | 47, 227, 232, 239, 562, 745, 824, 907 |
| HpyF10VI | GCNNNNNNNGC | 2 cut(s) | 710, 716 |
| HpyF3I | CTNAG | 1 cut(s) | 765 |
| HpySE526I | ACGT | 2 cut(s) | 456, 800 |
| Hsp92I | GRCGYC | 1 cut(s) | 372 |
| Hsp92II | CATG | 5 cut(s) | 146, 428, 539, 566, 688 |
| HspAI | GCGC | 1 cut(s) | 926 |
| Kzo9I | GATC | 4 cut(s) | 250, 681, 865, 946 |
| LpnPI | CCDG | 5 cut(s) | 26, 78, 188, 484, 945 |
| Lsp1109I | GCAGC | 2 cut(s) | 697, 891 |
| LweI | GCATC | 4 cut(s) | 214, 481, 833, 937 |
| MaeI | CTAG | 5 cut(s) | 102, 366, 389, 645, 938 |
| MaeII | ACGT | 2 cut(s) | 456, 800 |
| MaeIII | GTNAC | 1 cut(s) | 887 |
| MalI | GATC | 4 cut(s) | 252, 683, 867, 948 |
| MboI | GATC | 4 cut(s) | 250, 681, 865, 946 |
| MboII | GAAGA | 8 cut(s) | 271, 563, 590, 763, 868, 888, 909, 930 |
| MflI | RGATCY | 1 cut(s) | 865 |
| MhlI | GDGCHC | 1 cut(s) | 521 |
| MluCI | AATT | 1 cut(s) | 465 |
| MnlI | CCTC | 7 cut(s) | 51, 301, 547, 550, 747, 852, 872 |
| MseI | TTAA | 2 cut(s) | 459, 728 |
| MslI | CAYNNNNRTG | 3 cut(s) | 147, 429, 653 |
| MspA1I | CMGCKG | 1 cut(s) | 710 |
| MspI | CCGG | 1 cut(s) | 175 |
| MspR9I | CCNGG | 1 cut(s) | 176 |
| Mva1269I | GAATGC | 1 cut(s) | 907 |
| MwoI | GCNNNNNNNGC | 2 cut(s) | 710, 716 |
| NciI | CCSGG | 1 cut(s) | 176 |
| NcoI | CCATGG | 1 cut(s) | 535 |
| NdeI | CATATG | 1 cut(s) | 654 |
| NdeII | GATC | 4 cut(s) | 250, 681, 865, 946 |
| NlaIII | CATG | 5 cut(s) | 146, 428, 539, 566, 688 |
| NlaIV | GGNNCC | 2 cut(s) | 690, 867 |
| NmuCI | GTSAC | 1 cut(s) | 887 |
| NspI | RCATGY | 1 cut(s) | 428 |
| PctI | GAATGC | 1 cut(s) | 907 |
| PfeI | GAWTC | 1 cut(s) | 29 |
| PflFI | GACNNNGTC | 1 cut(s) | 885 |
| PkrI | GCNGC | 2 cut(s) | 712, 906 |
| PsiI | TTATAA | 1 cut(s) | 293 |
| Psp1406I | AACGTT | 1 cut(s) | 800 |
| PspN4I | GGNNCC | 2 cut(s) | 690, 867 |
| PspPI | GGNCC | 1 cut(s) | 107 |
| PsuI | RGATCY | 1 cut(s) | 865 |
| PsyI | GACNNNGTC | 1 cut(s) | 885 |
| PvuII | CAGCTG | 1 cut(s) | 710 |
| RsaI | GTAC | 2 cut(s) | 364, 594 |
| RsaNI | GTAC | 2 cut(s) | 363, 593 |
| RseI | CAYNNNNRTG | 3 cut(s) | 147, 429, 653 |
| SaqAI | TTAA | 2 cut(s) | 459, 728 |
| SatI | GCNGC | 2 cut(s) | 711, 905 |
| Sau3AI | GATC | 4 cut(s) | 250, 681, 865, 946 |
| Sau96I | GGNCC | 1 cut(s) | 107 |
| ScaI | AGTACT | 1 cut(s) | 364 |
| ScrFI | CCNGG | 1 cut(s) | 176 |
| SduI | GDGCHC | 1 cut(s) | 521 |
| SfaNI | GCATC | 4 cut(s) | 214, 481, 833, 937 |
| SmiMI | CAYNNNNRTG | 3 cut(s) | 147, 429, 653 |
| Sse9I | AATT | 1 cut(s) | 465 |
| SspMI | CTAG | 5 cut(s) | 102, 366, 389, 645, 938 |
| StyD4I | CCNGG | 1 cut(s) | 174 |
| StyI | CCWWGG | 3 cut(s) | 246, 260, 535 |
| TaaI | ACNGT | 3 cut(s) | 182, 792, 885 |
| TaiI | ACGT | 2 cut(s) | 459, 803 |
| TaqI | TCGA | 2 cut(s) | 489, 612 |
| TasI | AATT | 1 cut(s) | 465 |
| TatI | WGTACW | 1 cut(s) | 362 |
| TfiI | GAWTC | 1 cut(s) | 29 |
| Tru1I | TTAA | 2 cut(s) | 459, 728 |
| Tru9I | TTAA | 2 cut(s) | 459, 728 |
| TseFI | GTSAC | 1 cut(s) | 887 |
| TseI | GCWGC | 2 cut(s) | 710, 904 |
| Tsp45I | GTSAC | 1 cut(s) | 887 |
| TspDTI | ATGAA | 6 cut(s) | 126, 132, 564, 684, 749, 764 |
| TspGWI | ACGGA | 1 cut(s) | 878 |
| Tth111I | GACNNNGTC | 1 cut(s) | 885 |
| XapI | RAATTY | 1 cut(s) | 465 |
| XceI | RCATGY | 1 cut(s) | 428 |
| XmiI | GTMKAC | 2 cut(s) | 312, 381 |
| XspI | CTAG | 5 cut(s) | 102, 366, 389, 645, 938 |
| ZrmI | AGTACT | 1 cut(s) | 364 |