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| Enzyme | Recognition Site | Cut Count | Positions (bp) |
|---|---|---|---|
| Acc36I | ACCTGC | 1 cut(s) | 1495 |
| AccB7I | CCANNNNNTGG | 1 cut(s) | 1262 |
| AciI | CCGC | 1 cut(s) | 893 |
| AclWI | GGATC | 2 cut(s) | 174, 250 |
| AcoI | YGGCCR | 1 cut(s) | 1465 |
| AcsI | RAATTY | 2 cut(s) | 392, 401 |
| AdeI | CACNNNGTG | 1 cut(s) | 126 |
| AfaI | GTAC | 6 cut(s) | 297, 327, 431, 584, 662, 706 |
| AfiI | CCNNNNNNNGG | 5 cut(s) | 498, 701, 837, 1262, 1374 |
| AflII | CTTAAG | 1 cut(s) | 994 |
| AflIII | ACRYGT | 1 cut(s) | 698 |
| AgsI | TTSAA | 9 cut(s) | 269, 284, 397, 487, 796, 809, 979, 1139, 1426 |
| AjnI | CCWGG | 2 cut(s) | 433, 1111 |
| AluBI | AGCT | 5 cut(s) | 373, 990, 1162, 1411, 1451 |
| AluI | AGCT | 5 cut(s) | 373, 990, 1162, 1411, 1451 |
| Alw26I | GTCTC | 1 cut(s) | 87 |
| AlwI | GGATC | 2 cut(s) | 174, 250 |
| AlwNI | CAGNNNCTG | 1 cut(s) | 890 |
| AoxI | GGCC | 6 cut(s) | 828, 1016, 1099, 1359, 1465, 1523 |
| ApaI | GGGCCC | 1 cut(s) | 1103 |
| ApeKI | GCWGC | 5 cut(s) | 999, 1162, 1418, 1445, 1448 |
| ApoI | RAATTY | 2 cut(s) | 392, 401 |
| AseI | ATTAAT | 1 cut(s) | 1145 |
| AspA2I | CCTAGG | 1 cut(s) | 788 |
| AspS9I | GGNCC | 3 cut(s) | 1017, 1099, 1100 |
| AsuHPI | GGTGA | 2 cut(s) | 368, 1189 |
| AvrII | CCTAGG | 1 cut(s) | 788 |
| BaeGI | GKGCMC | 1 cut(s) | 1103 |
| BaeI | ACNNNNGTAYC | 2 cut(s) | 413, 446 |
| BanII | GRGCYC | 2 cut(s) | 1103, 1228 |
| BbsI | GAAGAC | 1 cut(s) | 1396 |
| BbvCI | CCTCAGC | 1 cut(s) | 1509 |
| BbvI | GCAGC | 5 cut(s) | 1011, 1149, 1405, 1457, 1460 |
| BccI | CCATC | 6 cut(s) | 857, 885, 965, 1205, 1351, 1404 |
| BceAI | ACGGC | 1 cut(s) | 1452 |
| BcgI | CGANNNNNNTGC | 2 cut(s) | 948, 982 |
| BciT130I | CCWGG | 2 cut(s) | 435, 1113 |
| BcoDI | GTCTC | 1 cut(s) | 87 |
| BfaI | CTAG | 5 cut(s) | 90, 711, 789, 1340, 1521 |
| BfmI | CTRYAG | 1 cut(s) | 882 |
| BfrI | CTTAAG | 1 cut(s) | 994 |
| BfuAI | ACCTGC | 1 cut(s) | 1495 |
| BglII | AGATCT | 1 cut(s) | 32 |
| BisI | GCNGC | 6 cut(s) | 894, 1000, 1163, 1419, 1446, 1449 |
| BlnI | CCTAGG | 1 cut(s) | 788 |
| BlsI | GCNGC | 6 cut(s) | 895, 1001, 1164, 1420, 1447, 1450 |
| Bme1390I | CCNGG | 2 cut(s) | 435, 1113 |
| BmgT120I | GGNCC | 3 cut(s) | 1017, 1099, 1100 |
| BmiI | GGNNCC | 1 cut(s) | 1101 |
| BmrFI | CCNGG | 2 cut(s) | 435, 1113 |
| BmsI | GCATC | 3 cut(s) | 403, 1068, 1183 |
| BpiI | GAAGAC | 1 cut(s) | 1396 |
| Bpu10I | CCTNAGC | 2 cut(s) | 1412, 1509 |
| Bsa29I | ATCGAT | 1 cut(s) | 1125 |
| BsaI | GGTCTC | 1 cut(s) | 87 |
| BsaJI | CCNNGG | 3 cut(s) | 433, 788, 1049 |
| Bsc4I | CCNNNNNNNGG | 5 cut(s) | 498, 701, 837, 1262, 1374 |
| BseBI | CCWGG | 2 cut(s) | 435, 1113 |
| BseCI | ATCGAT | 1 cut(s) | 1125 |
| BseDI | CCNNGG | 3 cut(s) | 433, 788, 1049 |
| BseGI | GGATG | 7 cut(s) | 370, 507, 868, 877, 976, 1396, 1519 |
| BseLI | CCNNNNNNNGG | 5 cut(s) | 498, 701, 837, 1262, 1374 |
| BseMII | CTCAG | 3 cut(s) | 534, 534, 1500 |
| BseRI | GAGGAG | 1 cut(s) | 383 |
| BseSI | GKGCMC | 1 cut(s) | 1103 |
| BseXI | GCAGC | 5 cut(s) | 1011, 1149, 1405, 1457, 1460 |
| BsgI | GTGCAG | 1 cut(s) | 135 |
| BshFI | GGCC | 6 cut(s) | 830, 1018, 1101, 1361, 1467, 1525 |
| BshVI | ATCGAT | 1 cut(s) | 1125 |
| BsiSI | CCGG | 1 cut(s) | 554 |
| BslFI | GGGAC | 1 cut(s) | 737 |
| BslI | CCNNNNNNNGG | 5 cut(s) | 498, 701, 837, 1262, 1374 |
| BsmAI | GTCTC | 1 cut(s) | 87 |
| BsmFI | GGGAC | 1 cut(s) | 737 |
| BsnI | GGCC | 6 cut(s) | 830, 1018, 1101, 1361, 1467, 1525 |
| Bso31I | GGTCTC | 1 cut(s) | 87 |
| Bsp120I | GGGCCC | 1 cut(s) | 1099 |
| Bsp1286I | GDGCHC | 2 cut(s) | 1103, 1228 |
| Bsp1407I | TGTACA | 2 cut(s) | 295, 660 |
| Bsp143I | GATC | 3 cut(s) | 32, 166, 242 |
| Bsp19I | CCATGG | 1 cut(s) | 1049 |
| BspACI | CCGC | 1 cut(s) | 893 |
| BspANI | GGCC | 6 cut(s) | 830, 1018, 1101, 1361, 1467, 1525 |
| BspCNI | CTCAG | 3 cut(s) | 533, 535, 1501 |
| BspDI | ATCGAT | 1 cut(s) | 1125 |
| BspHI | TCATGA | 1 cut(s) | 37 |
| BspLI | GGNNCC | 1 cut(s) | 1101 |
| BspMAI | CTGCAG | 1 cut(s) | 886 |
| BspMI | ACCTGC | 1 cut(s) | 1495 |
| BspPI | GGATC | 2 cut(s) | 174, 250 |
| BspTI | CTTAAG | 1 cut(s) | 994 |
| BspTNI | GGTCTC | 1 cut(s) | 87 |
| BsrGI | TGTACA | 2 cut(s) | 295, 660 |
| BssECI | CCNNGG | 3 cut(s) | 433, 788, 1049 |
| BssMI | GATC | 3 cut(s) | 32, 166, 242 |
| BssT1I | CCWWGG | 2 cut(s) | 788, 1049 |
| Bst2UI | CCWGG | 2 cut(s) | 435, 1113 |
| Bst4CI | ACNGT | 1 cut(s) | 104 |
| Bst6I | CTCTTC | 2 cut(s) | 590, 1058 |
| BstAFI | CTTAAG | 1 cut(s) | 994 |
| BstAPI | GCANNNNNTGC | 1 cut(s) | 890 |
| BstAUI | TGTACA | 2 cut(s) | 295, 660 |
| BstC8I | GCNNGC | 3 cut(s) | 21, 640, 843 |
| BstDEI | CTNAG | 5 cut(s) | 520, 543, 1220, 1412, 1509 |
| BstDSI | CCRYGG | 1 cut(s) | 1049 |
| BstEII | GGTNACC | 2 cut(s) | 1030, 1265 |
| BstF5I | GGATG | 7 cut(s) | 370, 507, 868, 877, 976, 1396, 1519 |
| BstKTI | GATC | 3 cut(s) | 35, 169, 245 |
| BstMAI | GTCTC | 1 cut(s) | 87 |
| BstMBI | GATC | 3 cut(s) | 32, 166, 242 |
| BstMWI | GCNNNNNNNGC | 4 cut(s) | 472, 873, 890, 996 |
| BstNI | CCWGG | 2 cut(s) | 435, 1113 |
| BstNSI | RCATGY | 6 cut(s) | 23, 638, 702, 845, 1305, 1445 |
| BstPI | GGTNACC | 2 cut(s) | 1030, 1265 |
| BstSCI | CCNGG | 2 cut(s) | 433, 1111 |
| BstSFI | CTRYAG | 1 cut(s) | 882 |
| BstSLI | GKGCMC | 1 cut(s) | 1103 |
| BstV1I | GCAGC | 5 cut(s) | 1011, 1149, 1405, 1457, 1460 |
| BstV2I | GAAGAC | 1 cut(s) | 1396 |
| BstX2I | RGATCY | 1 cut(s) | 32 |
| BstYI | RGATCY | 1 cut(s) | 32 |
| Bsu15I | ATCGAT | 1 cut(s) | 1125 |
| BsuRI | GGCC | 6 cut(s) | 830, 1018, 1101, 1361, 1467, 1525 |
| BsuTUI | ATCGAT | 1 cut(s) | 1125 |
| BtgI | CCRYGG | 1 cut(s) | 1049 |
| BtsCI | GGATG | 7 cut(s) | 370, 507, 868, 877, 976, 1396, 1519 |
| BveI | ACCTGC | 1 cut(s) | 1495 |
| Cac8I | GCNNGC | 3 cut(s) | 21, 640, 843 |
| CaiI | CAGNNNCTG | 1 cut(s) | 890 |
| CciI | TCATGA | 1 cut(s) | 37 |
| Cfr13I | GGNCC | 3 cut(s) | 1017, 1099, 1100 |
| ClaI | ATCGAT | 1 cut(s) | 1125 |
| Csp6I | GTAC | 6 cut(s) | 296, 326, 430, 583, 661, 705 |
| CviQI | GTAC | 6 cut(s) | 296, 326, 430, 583, 661, 705 |
| DdeI | CTNAG | 5 cut(s) | 520, 543, 1220, 1412, 1509 |
| DpnI | GATC | 3 cut(s) | 34, 168, 244 |
| DpnII | GATC | 3 cut(s) | 32, 166, 242 |
| DraIII | CACNNNGTG | 1 cut(s) | 126 |
| EaeI | YGGCCR | 1 cut(s) | 1465 |
| Eam1104I | CTCTTC | 2 cut(s) | 590, 1058 |
| EarI | CTCTTC | 2 cut(s) | 590, 1058 |
| Eco130I | CCWWGG | 2 cut(s) | 788, 1049 |
| Eco147I | AGGCCT | 1 cut(s) | 830 |
| Eco24I | GRGCYC | 2 cut(s) | 1103, 1228 |
| Eco31I | GGTCTC | 1 cut(s) | 87 |
| Eco91I | GGTNACC | 2 cut(s) | 1030, 1265 |
| EcoO109I | RGGNCCY | 1 cut(s) | 1100 |
| EcoO65I | GGTNACC | 2 cut(s) | 1030, 1265 |
| EcoRI | GAATTC | 1 cut(s) | 392 |
| EcoRII | CCWGG | 2 cut(s) | 433, 1111 |
| EcoT14I | CCWWGG | 2 cut(s) | 788, 1049 |
| EcoT22I | ATGCAT | 1 cut(s) | 1303 |
| EcoT38I | GRGCYC | 2 cut(s) | 1103, 1228 |
| ErhI | CCWWGG | 2 cut(s) | 788, 1049 |
| FalI | AAGNNNNNCTT | 6 cut(s) | 155, 187, 851, 883, 1405, 1437 |
| FaqI | GGGAC | 1 cut(s) | 737 |
| Fnu4HI | GCNGC | 6 cut(s) | 894, 1000, 1163, 1419, 1446, 1449 |
| FokI | GGATG | 7 cut(s) | 377, 514, 864, 875, 983, 1383, 1526 |
| FriOI | GRGCYC | 2 cut(s) | 1103, 1228 |
| Fsp4HI | GCNGC | 6 cut(s) | 894, 1000, 1163, 1419, 1446, 1449 |
| FspBI | CTAG | 5 cut(s) | 90, 711, 789, 1340, 1521 |
| GluI | GCNGC | 6 cut(s) | 894, 1000, 1163, 1419, 1446, 1449 |
| HaeIII | GGCC | 6 cut(s) | 830, 1018, 1101, 1361, 1467, 1525 |
| HapII | CCGG | 1 cut(s) | 554 |
| HincII | GTYRAC | 1 cut(s) | 409 |
| HindII | GTYRAC | 1 cut(s) | 409 |
| HinfI | GANTC | 7 cut(s) | 236, 269, 284, 290, 509, 750, 887 |
| HpaII | CCGG | 1 cut(s) | 554 |
| HphI | GGTGA | 2 cut(s) | 368, 1189 |
| Hpy166II | GTNNAC | 5 cut(s) | 409, 583, 1132, 1189, 1345 |
| Hpy188I | TCNGA | 5 cut(s) | 274, 289, 523, 970, 1308 |
| Hpy188III | TCNNGA | 5 cut(s) | 38, 240, 266, 397, 1237 |
| Hpy8I | GTNNAC | 5 cut(s) | 409, 583, 1132, 1189, 1345 |
| HpyAV | CCTTC | 4 cut(s) | 347, 551, 582, 1166 |
| HpyCH4III | ACNGT | 1 cut(s) | 104 |
| HpyF10VI | GCNNNNNNNGC | 4 cut(s) | 472, 873, 890, 996 |
| HpyF3I | CTNAG | 5 cut(s) | 520, 543, 1220, 1412, 1509 |
| Kzo9I | GATC | 3 cut(s) | 32, 166, 242 |
| LmnI | GCTCC | 4 cut(s) | 370, 995, 1456, 1495 |
| Lsp1109I | GCAGC | 5 cut(s) | 1011, 1149, 1405, 1457, 1460 |
| LweI | GCATC | 3 cut(s) | 403, 1068, 1183 |
| MaeI | CTAG | 5 cut(s) | 90, 711, 789, 1340, 1521 |
| MaeIII | GTNAC | 3 cut(s) | 302, 1030, 1265 |
| MalI | GATC | 3 cut(s) | 34, 168, 244 |
| MboI | GATC | 3 cut(s) | 32, 166, 242 |
| MboII | GAAGA | 5 cut(s) | 607, 1075, 1401, 1546, 1549 |
| MfeI | CAATTG | 1 cut(s) | 279 |
| MflI | RGATCY | 1 cut(s) | 32 |
| MhlI | GDGCHC | 2 cut(s) | 1103, 1228 |
| MluCI | AATT | 5 cut(s) | 279, 329, 392, 401, 870 |
| MlyI | GAGTC | 3 cut(s) | 245, 284, 759 |
| MmeI | TCCRAC | 2 cut(s) | 330, 1511 |
| Mph1103I | ATGCAT | 1 cut(s) | 1303 |
| MseI | TTAA | 6 cut(s) | 189, 833, 869, 995, 1145, 1157 |
| MslI | CAYNNNNRTG | 2 cut(s) | 455, 712 |
| MspCI | CTTAAG | 1 cut(s) | 994 |
| MspI | CCGG | 1 cut(s) | 554 |
| MspR9I | CCNGG | 2 cut(s) | 435, 1113 |
| MunI | CAATTG | 1 cut(s) | 279 |
| MvaI | CCWGG | 2 cut(s) | 435, 1113 |
| MwoI | GCNNNNNNNGC | 4 cut(s) | 472, 873, 890, 996 |
| NcoI | CCATGG | 1 cut(s) | 1049 |
| NdeII | GATC | 3 cut(s) | 32, 166, 242 |
| NlaIV | GGNNCC | 1 cut(s) | 1101 |
| NsiI | ATGCAT | 1 cut(s) | 1303 |
| NspI | RCATGY | 6 cut(s) | 23, 638, 702, 845, 1305, 1445 |
| PaeI | GCATGC | 2 cut(s) | 23, 845 |
| PagI | TCATGA | 1 cut(s) | 37 |
| PceI | AGGCCT | 1 cut(s) | 830 |
| PciI | ACATGT | 1 cut(s) | 698 |
| PcsI | WCGNNNNNNNCGW | 1 cut(s) | 949 |
| PfeI | GAWTC | 4 cut(s) | 269, 284, 509, 887 |
| PflMI | CCANNNNNTGG | 1 cut(s) | 1262 |
| PkrI | GCNGC | 6 cut(s) | 895, 1001, 1164, 1420, 1447, 1450 |
| PleI | GAGTC | 3 cut(s) | 244, 284, 758 |
| PpsI | GAGTC | 3 cut(s) | 244, 284, 758 |
| PscI | ACATGT | 1 cut(s) | 698 |
| PshBI | ATTAAT | 1 cut(s) | 1145 |
| Psp6I | CCWGG | 2 cut(s) | 433, 1111 |
| PspEI | GGTNACC | 2 cut(s) | 1030, 1265 |
| PspGI | CCWGG | 2 cut(s) | 433, 1111 |
| PspN4I | GGNNCC | 1 cut(s) | 1101 |
| PspOMI | GGGCCC | 1 cut(s) | 1099 |
| PspPI | GGNCC | 3 cut(s) | 1017, 1099, 1100 |
| PstI | CTGCAG | 1 cut(s) | 886 |
| PstNI | CAGNNNCTG | 1 cut(s) | 890 |
| PsuI | RGATCY | 1 cut(s) | 32 |
| RsaI | GTAC | 6 cut(s) | 297, 327, 431, 584, 662, 706 |
| RsaNI | GTAC | 6 cut(s) | 296, 326, 430, 583, 661, 705 |
| RseI | CAYNNNNRTG | 2 cut(s) | 455, 712 |
| SaqAI | TTAA | 6 cut(s) | 189, 833, 869, 995, 1145, 1157 |
| SatI | GCNGC | 6 cut(s) | 894, 1000, 1163, 1419, 1446, 1449 |
| Sau3AI | GATC | 3 cut(s) | 32, 166, 242 |
| Sau96I | GGNCC | 3 cut(s) | 1017, 1099, 1100 |
| SchI | GAGTC | 3 cut(s) | 245, 284, 759 |
| ScrFI | CCNGG | 2 cut(s) | 435, 1113 |
| SduI | GDGCHC | 2 cut(s) | 1103, 1228 |
| SfaNI | GCATC | 3 cut(s) | 403, 1068, 1183 |
| SfcI | CTRYAG | 1 cut(s) | 882 |
| SmiMI | CAYNNNNRTG | 2 cut(s) | 455, 712 |
| SmlI | CTYRAG | 1 cut(s) | 994 |
| SmoI | CTYRAG | 1 cut(s) | 994 |
| SphI | GCATGC | 2 cut(s) | 23, 845 |
| Sse9I | AATT | 5 cut(s) | 279, 329, 392, 401, 870 |
| SseBI | AGGCCT | 1 cut(s) | 830 |
| SsiI | CCGC | 1 cut(s) | 893 |
| SspMI | CTAG | 5 cut(s) | 90, 711, 789, 1340, 1521 |
| StuI | AGGCCT | 1 cut(s) | 830 |
| StyD4I | CCNGG | 2 cut(s) | 433, 1111 |
| StyI | CCWWGG | 2 cut(s) | 788, 1049 |
| TaaI | ACNGT | 1 cut(s) | 104 |
| TaqI | TCGA | 3 cut(s) | 377, 1125, 1544 |
| TasI | AATT | 5 cut(s) | 279, 329, 392, 401, 870 |
| TatI | WGTACW | 3 cut(s) | 295, 325, 660 |
| TauI | GCSGC | 1 cut(s) | 896 |
| TfiI | GAWTC | 4 cut(s) | 269, 284, 509, 887 |
| Tru1I | TTAA | 6 cut(s) | 189, 833, 869, 995, 1145, 1157 |
| Tru9I | TTAA | 6 cut(s) | 189, 833, 869, 995, 1145, 1157 |
| TseI | GCWGC | 5 cut(s) | 999, 1162, 1418, 1445, 1448 |
| TspDTI | ATGAA | 9 cut(s) | 54, 336, 405, 473, 927, 1076, 1221, 1361, 1530 |
| TspGWI | ACGGA | 1 cut(s) | 266 |
| Van91I | CCANNNNNTGG | 1 cut(s) | 1262 |
| Vha464I | CTTAAG | 1 cut(s) | 994 |
| VspI | ATTAAT | 1 cut(s) | 1145 |
| XapI | RAATTY | 2 cut(s) | 392, 401 |
| XceI | RCATGY | 6 cut(s) | 23, 638, 702, 845, 1305, 1445 |
| XmaJI | CCTAGG | 1 cut(s) | 788 |
| XspI | CTAG | 5 cut(s) | 90, 711, 789, 1340, 1521 |
| Zsp2I | ATGCAT | 1 cut(s) | 1303 |