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| Enzyme | Recognition Site | Cut Count | Positions (bp) |
|---|---|---|---|
| AclWI | GGATC | 1 cut(s) | 196 |
| AfaI | GTAC | 3 cut(s) | 173, 269, 284 |
| AfiI | CCNNNNNNNGG | 1 cut(s) | 279 |
| AflIII | ACRYGT | 1 cut(s) | 555 |
| AgsI | TTSAA | 2 cut(s) | 85, 359 |
| AleI | CACNNNNGTG | 1 cut(s) | 514 |
| AluBI | AGCT | 2 cut(s) | 46, 121 |
| AluI | AGCT | 2 cut(s) | 46, 121 |
| AlwI | GGATC | 1 cut(s) | 196 |
| Asp700I | GAANNNNTTC | 1 cut(s) | 173 |
| AspLEI | GCGC | 1 cut(s) | 470 |
| AspS9I | GGNCC | 1 cut(s) | 245 |
| AsuC2I | CCSGG | 1 cut(s) | 179 |
| AsuII | TTCGAA | 1 cut(s) | 116 |
| AvaII | GGWCC | 1 cut(s) | 245 |
| AxyI | CCTNAGG | 1 cut(s) | 327 |
| BauI | CACGAG | 1 cut(s) | 435 |
| BccI | CCATC | 1 cut(s) | 213 |
| BcnI | CCSGG | 1 cut(s) | 179 |
| BfaI | CTAG | 1 cut(s) | 47 |
| BfoI | RGCGCY | 1 cut(s) | 471 |
| BmcAI | AGTACT | 1 cut(s) | 173 |
| Bme1390I | CCNGG | 1 cut(s) | 179 |
| Bme18I | GGWCC | 1 cut(s) | 245 |
| BmgT120I | GGNCC | 1 cut(s) | 245 |
| BmrFI | CCNGG | 1 cut(s) | 179 |
| BmsI | GCATC | 8 cut(s) | 226, 323, 331, 388, 458, 489, 511, 529 |
| Bpu14I | TTCGAA | 1 cut(s) | 116 |
| BpuEI | CTTGAG | 1 cut(s) | 59 |
| BpuMI | CCSGG | 1 cut(s) | 179 |
| BsaJI | CCNNGG | 1 cut(s) | 534 |
| BsaWI | WCCGGW | 1 cut(s) | 247 |
| Bsc4I | CCNNNNNNNGG | 1 cut(s) | 279 |
| Bse21I | CCTNAGG | 1 cut(s) | 327 |
| BseDI | CCNNGG | 1 cut(s) | 534 |
| BseGI | GGATG | 4 cut(s) | 322, 338, 449, 544 |
| BseLI | CCNNNNNNNGG | 1 cut(s) | 279 |
| BseMII | CTCAG | 1 cut(s) | 318 |
| BsiSI | CCGG | 2 cut(s) | 179, 248 |
| BslI | CCNNNNNNNGG | 1 cut(s) | 279 |
| Bsp119I | TTCGAA | 1 cut(s) | 116 |
| Bsp143I | GATC | 1 cut(s) | 201 |
| BspCNI | CTCAG | 1 cut(s) | 319 |
| BspPI | GGATC | 1 cut(s) | 196 |
| BspT104I | TTCGAA | 1 cut(s) | 116 |
| BssECI | CCNNGG | 1 cut(s) | 534 |
| BssMI | GATC | 1 cut(s) | 201 |
| BssSI | CACGAG | 1 cut(s) | 435 |
| Bst2BI | CACGAG | 1 cut(s) | 435 |
| Bst4CI | ACNGT | 1 cut(s) | 214 |
| BstAPI | GCANNNNNTGC | 1 cut(s) | 95 |
| BstBI | TTCGAA | 1 cut(s) | 116 |
| BstC8I | GCNNGC | 1 cut(s) | 135 |
| BstDEI | CTNAG | 2 cut(s) | 327, 392 |
| BstENI | CCTNNNNNAGG | 1 cut(s) | 277 |
| BstF5I | GGATG | 4 cut(s) | 322, 338, 449, 544 |
| BstH2I | RGCGCY | 1 cut(s) | 471 |
| BstHHI | GCGC | 1 cut(s) | 470 |
| BstKTI | GATC | 1 cut(s) | 204 |
| BstMBI | GATC | 1 cut(s) | 201 |
| BstMWI | GCNNNNNNNGC | 2 cut(s) | 95, 446 |
| BstNSI | RCATGY | 1 cut(s) | 559 |
| BstSCI | CCNGG | 1 cut(s) | 177 |
| Bsu36I | CCTNAGG | 1 cut(s) | 327 |
| BtsCI | GGATG | 4 cut(s) | 322, 338, 449, 544 |
| BtsIMutI | CAGTG | 1 cut(s) | 378 |
| Cac8I | GCNNGC | 1 cut(s) | 135 |
| CfoI | GCGC | 1 cut(s) | 470 |
| Cfr13I | GGNCC | 1 cut(s) | 245 |
| Csp6I | GTAC | 3 cut(s) | 172, 268, 283 |
| CviAII | CATG | 3 cut(s) | 286, 475, 556 |
| CviJI | RGCY | 4 cut(s) | 46, 121, 182, 440 |
| CviKI_1 | RGCY | 4 cut(s) | 46, 121, 182, 440 |
| CviQI | GTAC | 3 cut(s) | 172, 268, 283 |
| DdeI | CTNAG | 2 cut(s) | 327, 392 |
| DpnI | GATC | 1 cut(s) | 203 |
| DpnII | GATC | 1 cut(s) | 201 |
| DraI | TTTAAA | 1 cut(s) | 298 |
| Eco47I | GGWCC | 1 cut(s) | 245 |
| Eco81I | CCTNAGG | 1 cut(s) | 327 |
| EcoNI | CCTNNNNNAGG | 1 cut(s) | 277 |
| EcoT22I | ATGCAT | 3 cut(s) | 338, 451, 504 |
| FaeI | CATG | 3 cut(s) | 289, 478, 559 |
| FalI | AAGNNNNNCTT | 2 cut(s) | 257, 289 |
| FatI | CATG | 3 cut(s) | 285, 474, 555 |
| FokI | GGATG | 4 cut(s) | 309, 345, 436, 551 |
| FspBI | CTAG | 1 cut(s) | 47 |
| GlaI | GCGC | 1 cut(s) | 469 |
| HaeII | RGCGCY | 1 cut(s) | 471 |
| HapII | CCGG | 2 cut(s) | 179, 248 |
| HhaI | GCGC | 1 cut(s) | 470 |
| Hin1II | CATG | 3 cut(s) | 289, 478, 559 |
| Hin6I | GCGC | 1 cut(s) | 468 |
| HinP1I | GCGC | 1 cut(s) | 468 |
| HinfI | GANTC | 3 cut(s) | 7, 344, 414 |
| HpaII | CCGG | 2 cut(s) | 179, 248 |
| Hpy188III | TCNNGA | 4 cut(s) | 38, 277, 326, 411 |
| HpyAV | CCTTC | 1 cut(s) | 283 |
| HpyCH4III | ACNGT | 1 cut(s) | 214 |
| HpyCH4IV | ACGT | 2 cut(s) | 28, 385 |
| HpyCH4V | TGCA | 9 cut(s) | 4, 133, 217, 336, 378, 449, 502, 526, 542 |
| HpyF10VI | GCNNNNNNNGC | 2 cut(s) | 95, 446 |
| HpyF3I | CTNAG | 2 cut(s) | 327, 392 |
| HpySE526I | ACGT | 2 cut(s) | 28, 385 |
| Hsp92II | CATG | 3 cut(s) | 289, 478, 559 |
| HspAI | GCGC | 1 cut(s) | 468 |
| Kzo9I | GATC | 1 cut(s) | 201 |
| LpnPI | CCDG | 6 cut(s) | 107, 192, 261, 339, 396, 450 |
| LweI | GCATC | 8 cut(s) | 226, 323, 331, 388, 458, 489, 511, 529 |
| MaeI | CTAG | 1 cut(s) | 47 |
| MaeII | ACGT | 2 cut(s) | 28, 385 |
| MaeIII | GTNAC | 1 cut(s) | 148 |
| MalI | GATC | 1 cut(s) | 203 |
| MboI | GATC | 1 cut(s) | 201 |
| MboII | GAAGA | 2 cut(s) | 5, 73 |
| MlyI | GAGTC | 1 cut(s) | 353 |
| MnlI | CCTC | 3 cut(s) | 273, 322, 529 |
| Mph1103I | ATGCAT | 3 cut(s) | 338, 451, 504 |
| MroXI | GAANNNNTTC | 1 cut(s) | 173 |
| MseI | TTAA | 1 cut(s) | 297 |
| MslI | CAYNNNNRTG | 1 cut(s) | 514 |
| MspI | CCGG | 2 cut(s) | 179, 248 |
| MspR9I | CCNGG | 1 cut(s) | 179 |
| MwoI | GCNNNNNNNGC | 2 cut(s) | 95, 446 |
| NciI | CCSGG | 1 cut(s) | 179 |
| NdeII | GATC | 1 cut(s) | 201 |
| NlaIII | CATG | 3 cut(s) | 289, 478, 559 |
| NsiI | ATGCAT | 3 cut(s) | 338, 451, 504 |
| NspI | RCATGY | 1 cut(s) | 559 |
| NspV | TTCGAA | 1 cut(s) | 116 |
| OliI | CACNNNNGTG | 1 cut(s) | 514 |
| PciI | ACATGT | 1 cut(s) | 555 |
| PdmI | GAANNNNTTC | 1 cut(s) | 173 |
| PfeI | GAWTC | 2 cut(s) | 7, 414 |
| PleI | GAGTC | 1 cut(s) | 352 |
| PpsI | GAGTC | 1 cut(s) | 352 |
| PscI | ACATGT | 1 cut(s) | 555 |
| PspPI | GGNCC | 1 cut(s) | 245 |
| PsrI | GAACNNNNNNTAC | 2 cut(s) | 216, 248 |
| RsaI | GTAC | 3 cut(s) | 173, 269, 284 |
| RsaNI | GTAC | 3 cut(s) | 172, 268, 283 |
| RseI | CAYNNNNRTG | 1 cut(s) | 514 |
| SaqAI | TTAA | 1 cut(s) | 297 |
| Sau3AI | GATC | 1 cut(s) | 201 |
| Sau96I | GGNCC | 1 cut(s) | 245 |
| ScaI | AGTACT | 1 cut(s) | 173 |
| SchI | GAGTC | 1 cut(s) | 353 |
| ScrFI | CCNGG | 1 cut(s) | 179 |
| SetI | ASST | 7 cut(s) | 31, 48, 56, 123, 284, 366, 388 |
| SfaNI | GCATC | 8 cut(s) | 226, 323, 331, 388, 458, 489, 511, 529 |
| SfuI | TTCGAA | 1 cut(s) | 116 |
| SinI | GGWCC | 1 cut(s) | 245 |
| SmiMI | CAYNNNNRTG | 1 cut(s) | 514 |
| SmlI | CTYRAG | 1 cut(s) | 38 |
| SmoI | CTYRAG | 1 cut(s) | 38 |
| SspMI | CTAG | 1 cut(s) | 47 |
| StyD4I | CCNGG | 1 cut(s) | 177 |
| TaaI | ACNGT | 1 cut(s) | 214 |
| TaiI | ACGT | 2 cut(s) | 31, 388 |
| TaqI | TCGA | 4 cut(s) | 116, 192, 276, 316 |
| TatI | WGTACW | 1 cut(s) | 171 |
| TfiI | GAWTC | 2 cut(s) | 7, 414 |
| Tru1I | TTAA | 1 cut(s) | 297 |
| Tru9I | TTAA | 1 cut(s) | 297 |
| TscAI | CASTG | 1 cut(s) | 385 |
| TspDTI | ATGAA | 2 cut(s) | 174, 302 |
| TspRI | CASTG | 1 cut(s) | 385 |
| VpaK11BI | GGWCC | 1 cut(s) | 245 |
| XagI | CCTNNNNNAGG | 1 cut(s) | 277 |
| XceI | RCATGY | 1 cut(s) | 559 |
| XmnI | GAANNNNTTC | 1 cut(s) | 173 |
| XspI | CTAG | 1 cut(s) | 47 |
| ZrmI | AGTACT | 1 cut(s) | 173 |
| Zsp2I | ATGCAT | 3 cut(s) | 338, 451, 504 |