transposon protein
| Domain Name | Pfam ID | Position | E-value | Description |
|---|---|---|---|---|
| Transpos_assoc | PF13963 | 24 - 101 | 4.3e-20 | Transposase-associated domain |
| Transposase_21 | PF02992 | 337 - 546 | 6.1e-102 | Transposase family tnp2 |
| DUF4218 | PF13960 | 734 - 846 | 4.4e-51 | Domain of unknown function (DUF4218) |
| DUF4216 | PF13952 | 926 - 975 | 2.7e-11 | Domain of unknown function (DUF4216) |
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| Enzyme | Recognition Site | Cut Count | Positions (bp) |
|---|---|---|---|
| AasI | GACNNNNNNGTC | 1 cut(s) | 655 |
| AatII | GACGTC | 1 cut(s) | 2813 |
| Acc16I | TGCGCA | 2 cut(s) | 2206, 3077 |
| Acc65I | GGTACC | 1 cut(s) | 2835 |
| AccB1I | GGYRCC | 1 cut(s) | 2835 |
| AccI | GTMKAC | 1 cut(s) | 2508 |
| AccII | CGCG | 2 cut(s) | 1651, 2337 |
| AccIII | TCCGGA | 1 cut(s) | 715 |
| AciI | CCGC | 4 cut(s) | 316, 1649, 2033, 2419 |
| AclI | AACGTT | 1 cut(s) | 2820 |
| AclWI | GGATC | 6 cut(s) | 89, 238, 1076, 1539, 2840, 2996 |
| AcsI | RAATTY | 8 cut(s) | 217, 1411, 1604, 1997, 2056, 2280, 2565, 2792 |
| AcvI | CACGTG | 1 cut(s) | 2701 |
| AcyI | GRCGYC | 1 cut(s) | 2810 |
| AfaI | GTAC | 8 cut(s) | 1064, 1144, 1984, 2256, 2589, 2725, 2837, 3067 |
| AfiI | CCNNNNNNNGG | 1 cut(s) | 2902 |
| AflII | CTTAAG | 1 cut(s) | 1301 |
| AflIII | ACRYGT | 1 cut(s) | 412 |
| AhlI | ACTAGT | 1 cut(s) | 3062 |
| AjnI | CCWGG | 1 cut(s) | 577 |
| Alw21I | GWGCWC | 4 cut(s) | 1430, 2328, 2700, 3208 |
| Alw26I | GTCTC | 4 cut(s) | 1322, 1582, 1980, 2737 |
| Alw44I | GTGCAC | 1 cut(s) | 2324 |
| AlwI | GGATC | 6 cut(s) | 89, 238, 1076, 1539, 2840, 2996 |
| AlwNI | CAGNNNCTG | 1 cut(s) | 1034 |
| Aor13HI | TCCGGA | 1 cut(s) | 715 |
| AoxI | GGCC | 3 cut(s) | 1102, 1160, 2353 |
| ApaLI | GTGCAC | 1 cut(s) | 2324 |
| ApeKI | GCWGC | 3 cut(s) | 1370, 1921, 3137 |
| ApoI | RAATTY | 8 cut(s) | 217, 1411, 1604, 1997, 2056, 2280, 2565, 2792 |
| ArsI | GACNNNNNNTTYG | 2 cut(s) | 175, 207 |
| Asp700I | GAANNNNTTC | 2 cut(s) | 774, 2757 |
| Asp718I | GGTACC | 1 cut(s) | 2835 |
| AspLEI | GCGC | 3 cut(s) | 1545, 2207, 3078 |
| AspS9I | GGNCC | 5 cut(s) | 648, 1244, 1383, 2354, 3193 |
| AsuC2I | CCSGG | 2 cut(s) | 1257, 3006 |
| AsuHPI | GGTGA | 7 cut(s) | 1022, 1245, 1625, 3020, 3161, 3224, 3242 |
| AsuNHI | GCTAGC | 1 cut(s) | 2857 |
| AvaII | GGWCC | 4 cut(s) | 648, 1244, 1383, 3193 |
| BaeGI | GKGCMC | 1 cut(s) | 2328 |
| BanI | GGYRCC | 1 cut(s) | 2835 |
| BanII | GRGCYC | 1 cut(s) | 3208 |
| BarI | GAAGNNNNNNTAC | 2 cut(s) | 3207, 3239 |
| BbrPI | CACGTG | 1 cut(s) | 2701 |
| BbsI | GAAGAC | 1 cut(s) | 456 |
| Bbv12I | GWGCWC | 4 cut(s) | 1430, 2328, 2700, 3208 |
| BbvCI | CCTCAGC | 1 cut(s) | 2451 |
| BbvI | GCAGC | 3 cut(s) | 1382, 1933, 3149 |
| BccI | CCATC | 3 cut(s) | 972, 1394, 2018 |
| BceAI | ACGGC | 2 cut(s) | 1132, 2306 |
| BciT130I | CCWGG | 1 cut(s) | 579 |
| BciVI | GTATCC | 4 cut(s) | 478, 1493, 2357, 2388 |
| BclI | TGATCA | 1 cut(s) | 3232 |
| BcnI | CCSGG | 2 cut(s) | 1257, 3006 |
| BcoDI | GTCTC | 4 cut(s) | 1322, 1582, 1980, 2737 |
| BcuI | ACTAGT | 1 cut(s) | 3062 |
| BfaI | CTAG | 8 cut(s) | 954, 1599, 1880, 2273, 2858, 3063, 3227, 3256 |
| BfmI | CTRYAG | 1 cut(s) | 1035 |
| BfrI | CTTAAG | 1 cut(s) | 1301 |
| BfuI | GTATCC | 4 cut(s) | 478, 1493, 2357, 2388 |
| BglII | AGATCT | 5 cut(s) | 741, 950, 1909, 2227, 2980 |
| BisI | GCNGC | 4 cut(s) | 1371, 1922, 2034, 3138 |
| BlsI | GCNGC | 4 cut(s) | 1372, 1923, 2035, 3139 |
| BmcAI | AGTACT | 2 cut(s) | 1144, 2725 |
| Bme1390I | CCNGG | 3 cut(s) | 579, 1257, 3006 |
| Bme18I | GGWCC | 4 cut(s) | 648, 1244, 1383, 3193 |
| BmgT120I | GGNCC | 5 cut(s) | 648, 1244, 1383, 2354, 3193 |
| BmiI | GGNNCC | 3 cut(s) | 894, 1176, 2837 |
| BmrFI | CCNGG | 3 cut(s) | 579, 1257, 3006 |
| BmrI | ACTGGG | 2 cut(s) | 335, 2351 |
| BmsI | GCATC | 4 cut(s) | 169, 337, 359, 1030 |
| BmtI | GCTAGC | 1 cut(s) | 2861 |
| BmuI | ACTGGG | 2 cut(s) | 335, 2351 |
| BoxI | GACNNNNGTC | 1 cut(s) | 834 |
| BpiI | GAAGAC | 1 cut(s) | 456 |
| BpmI | CTGGAG | 3 cut(s) | 1769, 2252, 2274 |
| Bpu10I | CCTNAGC | 1 cut(s) | 2451 |
| BpuEI | CTTGAG | 2 cut(s) | 167, 1988 |
| BpuMI | CCSGG | 2 cut(s) | 1257, 3006 |
| BsaAI | YACGTR | 2 cut(s) | 2701, 3046 |
| BsaBI | GATNNNNATC | 3 cut(s) | 2979, 3000, 3180 |
| BsaHI | GRCGYC | 1 cut(s) | 2810 |
| BsaI | GGTCTC | 1 cut(s) | 1582 |
| BsaJI | CCNNGG | 7 cut(s) | 234, 284, 490, 577, 929, 1193, 2912 |
| BsaWI | WCCGGW | 5 cut(s) | 715, 838, 1450, 1610, 2067 |
| BsaXI | ACNNNNNCTCC | 2 cut(s) | 1742, 1772 |
| Bsc4I | CCNNNNNNNGG | 1 cut(s) | 2902 |
| Bse118I | RCCGGY | 1 cut(s) | 1512 |
| Bse1I | ACTGG | 7 cut(s) | 27, 59, 341, 1510, 2357, 2539, 2602 |
| Bse3DI | GCAATG | 2 cut(s) | 853, 2056 |
| Bse8I | GATNNNNATC | 3 cut(s) | 2979, 3000, 3180 |
| BseAI | TCCGGA | 1 cut(s) | 715 |
| BseBI | CCWGG | 1 cut(s) | 579 |
| BseDI | CCNNGG | 7 cut(s) | 234, 284, 490, 577, 929, 1193, 2912 |
| BseGI | GGATG | 8 cut(s) | 63, 451, 1021, 1666, 2379, 2908, 2959, 3181 |
| BseJI | GATNNNNATC | 3 cut(s) | 2979, 3000, 3180 |
| BseLI | CCNNNNNNNGG | 1 cut(s) | 2902 |
| BseMI | GCAATG | 2 cut(s) | 853, 2056 |
| BseMII | CTCAG | 2 cut(s) | 911, 2442 |
| BseNI | ACTGG | 7 cut(s) | 27, 59, 341, 1510, 2357, 2539, 2602 |
| BseSI | GKGCMC | 1 cut(s) | 2328 |
| BseXI | GCAGC | 3 cut(s) | 1382, 1933, 3149 |
| BseYI | CCCAGC | 1 cut(s) | 2395 |
| BsgI | GTGCAG | 2 cut(s) | 1389, 1940 |
| Bsh1236I | CGCG | 2 cut(s) | 1651, 2337 |
| BshFI | GGCC | 3 cut(s) | 1104, 1162, 2355 |
| BshNI | GGYRCC | 1 cut(s) | 2835 |
| BsiHKAI | GWGCWC | 4 cut(s) | 1430, 2328, 2700, 3208 |
| BsiSI | CCGG | 9 cut(s) | 716, 839, 1025, 1256, 1451, 1513, 1611, 2068, 3006 |
| BslFI | GGGAC | 1 cut(s) | 2919 |
| BslI | CCNNNNNNNGG | 1 cut(s) | 2902 |
| BsmAI | GTCTC | 4 cut(s) | 1322, 1582, 1980, 2737 |
| BsmBI | CGTCTC | 1 cut(s) | 1980 |
| BsmFI | GGGAC | 1 cut(s) | 2919 |
| BsmI | GAATGC | 3 cut(s) | 175, 2294, 3139 |
| BsnI | GGCC | 3 cut(s) | 1104, 1162, 2355 |
| Bso31I | GGTCTC | 1 cut(s) | 1582 |
| Bsp1286I | GDGCHC | 4 cut(s) | 1430, 2328, 2700, 3208 |
| Bsp13I | TCCGGA | 1 cut(s) | 715 |
| Bsp19I | CCATGG | 2 cut(s) | 284, 1193 |
| BspACI | CCGC | 4 cut(s) | 316, 1649, 2033, 2419 |
| BspANI | GGCC | 3 cut(s) | 1104, 1162, 2355 |
| BspCNI | CTCAG | 2 cut(s) | 910, 2443 |
| BspEI | TCCGGA | 1 cut(s) | 715 |
| BspFNI | CGCG | 2 cut(s) | 1651, 2337 |
| BspLI | GGNNCC | 3 cut(s) | 894, 1176, 2837 |
| BspOI | GCTAGC | 1 cut(s) | 2861 |
| BspPI | GGATC | 6 cut(s) | 89, 238, 1076, 1539, 2840, 2996 |
| BspT107I | GGYRCC | 1 cut(s) | 2835 |
| BspTI | CTTAAG | 1 cut(s) | 1301 |
| BspTNI | GGTCTC | 1 cut(s) | 1582 |
| BsrDI | GCAATG | 2 cut(s) | 853, 2056 |
| BsrFI | RCCGGY | 1 cut(s) | 1512 |
| BsrI | ACTGG | 7 cut(s) | 27, 59, 341, 1510, 2357, 2539, 2602 |
| BssAI | RCCGGY | 1 cut(s) | 1512 |
| BssECI | CCNNGG | 7 cut(s) | 234, 284, 490, 577, 929, 1193, 2912 |
| BssNI | GRCGYC | 1 cut(s) | 2810 |
| BssT1I | CCWWGG | 5 cut(s) | 284, 490, 929, 1193, 2912 |
| Bst2UI | CCWGG | 1 cut(s) | 579 |
| Bst4CI | ACNGT | 4 cut(s) | 235, 1974, 2369, 3149 |
| Bst6I | CTCTTC | 5 cut(s) | 1580, 1685, 1691, 2676, 2748 |
| BstACI | GRCGYC | 1 cut(s) | 2810 |
| BstAFI | CTTAAG | 1 cut(s) | 1301 |
| BstAPI | GCANNNNNTGC | 1 cut(s) | 204 |
| BstBAI | YACGTR | 2 cut(s) | 2701, 3046 |
| BstC8I | GCNNGC | 4 cut(s) | 733, 1368, 2353, 2859 |
| BstDEI | CTNAG | 3 cut(s) | 897, 1725, 2451 |
| BstDSI | CCRYGG | 3 cut(s) | 234, 284, 1193 |
| BstF5I | GGATG | 8 cut(s) | 63, 451, 1021, 1666, 2379, 2908, 2959, 3181 |
| BstFNI | CGCG | 2 cut(s) | 1651, 2337 |
| BstHHI | GCGC | 3 cut(s) | 1545, 2207, 3078 |
| BstMAI | GTCTC | 4 cut(s) | 1322, 1582, 1980, 2737 |
| BstMWI | GCNNNNNNNGC | 6 cut(s) | 32, 204, 1306, 1885, 2348, 2867 |
| BstNI | CCWGG | 1 cut(s) | 579 |
| BstNSI | RCATGY | 2 cut(s) | 416, 1449 |
| BstPAI | GACNNNNGTC | 1 cut(s) | 834 |
| BstSCI | CCNGG | 3 cut(s) | 577, 1255, 3004 |
| BstSFI | CTRYAG | 1 cut(s) | 1035 |
| BstSLI | GKGCMC | 1 cut(s) | 2328 |
| BstUI | CGCG | 2 cut(s) | 1651, 2337 |
| BstV1I | GCAGC | 3 cut(s) | 1382, 1933, 3149 |
| BstV2I | GAAGAC | 1 cut(s) | 456 |
| BstX2I | RGATCY | 8 cut(s) | 94, 243, 741, 950, 1081, 1909, 2227, 2980 |
| BstYI | RGATCY | 8 cut(s) | 94, 243, 741, 950, 1081, 1909, 2227, 2980 |
| BsuI | GTATCC | 4 cut(s) | 478, 1493, 2357, 2388 |
| BsuRI | GGCC | 3 cut(s) | 1104, 1162, 2355 |
| BtgI | CCRYGG | 3 cut(s) | 234, 284, 1193 |
| BtsCI | GGATG | 8 cut(s) | 63, 451, 1021, 1666, 2379, 2908, 2959, 3181 |
| BtsI | GCAGTG | 1 cut(s) | 625 |
| BtsIMutI | CAGTG | 6 cut(s) | 20, 89, 625, 1503, 1637, 2364 |
| Cac8I | GCNNGC | 4 cut(s) | 733, 1368, 2353, 2859 |
| CaiI | CAGNNNCTG | 1 cut(s) | 1034 |
| CfoI | GCGC | 3 cut(s) | 1545, 2207, 3078 |
| Cfr10I | RCCGGY | 1 cut(s) | 1512 |
| Cfr13I | GGNCC | 5 cut(s) | 648, 1244, 1383, 2354, 3193 |
| CseI | GACGC | 2 cut(s) | 1271, 3032 |
| Csp6I | GTAC | 8 cut(s) | 1063, 1143, 1983, 2255, 2588, 2724, 2836, 3066 |
| CviQI | GTAC | 8 cut(s) | 1063, 1143, 1983, 2255, 2588, 2724, 2836, 3066 |
| DdeI | CTNAG | 3 cut(s) | 897, 1725, 2451 |
| DraI | TTTAAA | 1 cut(s) | 2085 |
| DrdI | GACNNNNNNGTC | 1 cut(s) | 655 |
| DseDI | GACNNNNNNGTC | 1 cut(s) | 655 |
| Eam1104I | CTCTTC | 5 cut(s) | 1580, 1685, 1691, 2676, 2748 |
| EarI | CTCTTC | 5 cut(s) | 1580, 1685, 1691, 2676, 2748 |
| Ecl136II | GAGCTC | 1 cut(s) | 3206 |
| Eco130I | CCWWGG | 5 cut(s) | 284, 490, 929, 1193, 2912 |
| Eco147I | AGGCCT | 1 cut(s) | 1104 |
| Eco24I | GRGCYC | 1 cut(s) | 3208 |
| Eco31I | GGTCTC | 1 cut(s) | 1582 |
| Eco32I | GATATC | 1 cut(s) | 2076 |
| Eco47I | GGWCC | 4 cut(s) | 648, 1244, 1383, 3193 |
| Eco53kI | GAGCTC | 1 cut(s) | 3206 |
| Eco72I | CACGTG | 1 cut(s) | 2701 |
| EcoICRI | GAGCTC | 1 cut(s) | 3206 |
| EcoO109I | RGGNCCY | 1 cut(s) | 1244 |
| EcoRI | GAATTC | 1 cut(s) | 1997 |
| EcoRII | CCWGG | 1 cut(s) | 577 |
| EcoRV | GATATC | 1 cut(s) | 2076 |
| EcoT14I | CCWWGG | 5 cut(s) | 284, 490, 929, 1193, 2912 |
| EcoT22I | ATGCAT | 2 cut(s) | 352, 1205 |
| EcoT38I | GRGCYC | 1 cut(s) | 3208 |
| ErhI | CCWWGG | 5 cut(s) | 284, 490, 929, 1193, 2912 |
| Esp3I | CGTCTC | 1 cut(s) | 1980 |
| FalI | AAGNNNNNCTT | 4 cut(s) | 728, 760, 2331, 2363 |
| FaqI | GGGAC | 1 cut(s) | 2919 |
| FauNDI | CATATG | 2 cut(s) | 1842, 2748 |
| FbaI | TGATCA | 1 cut(s) | 3232 |
| FblI | GTMKAC | 1 cut(s) | 2508 |
| Fnu4HI | GCNGC | 4 cut(s) | 1371, 1922, 2034, 3138 |
| FokI | GGATG | 8 cut(s) | 70, 458, 1008, 1653, 2386, 2895, 2966, 3188 |
| FriOI | GRGCYC | 1 cut(s) | 3208 |
| Fsp4HI | GCNGC | 4 cut(s) | 1371, 1922, 2034, 3138 |
| FspBI | CTAG | 8 cut(s) | 954, 1599, 1880, 2273, 2858, 3063, 3227, 3256 |
| FspI | TGCGCA | 2 cut(s) | 2206, 3077 |
| GlaI | GCGC | 3 cut(s) | 1544, 2206, 3077 |
| GluI | GCNGC | 4 cut(s) | 1371, 1922, 2034, 3138 |
| GsaI | CCCAGC | 1 cut(s) | 2399 |
| GsuI | CTGGAG | 3 cut(s) | 1769, 2252, 2274 |
| HaeIII | GGCC | 3 cut(s) | 1104, 1162, 2355 |
| HapII | CCGG | 9 cut(s) | 716, 839, 1025, 1256, 1451, 1513, 1611, 2068, 3006 |
| HgaI | GACGC | 2 cut(s) | 1271, 3032 |
| HhaI | GCGC | 3 cut(s) | 1545, 2207, 3078 |
| Hin1I | GRCGYC | 1 cut(s) | 2810 |
| Hin6I | GCGC | 3 cut(s) | 1543, 2205, 3076 |
| HinP1I | GCGC | 3 cut(s) | 1543, 2205, 3076 |
| HincII | GTYRAC | 5 cut(s) | 136, 637, 1227, 1485, 2509 |
| HindII | GTYRAC | 5 cut(s) | 136, 637, 1227, 1485, 2509 |
| HpaI | GTTAAC | 1 cut(s) | 136 |
| HpaII | CCGG | 9 cut(s) | 716, 839, 1025, 1256, 1451, 1513, 1611, 2068, 3006 |
| HphI | GGTGA | 7 cut(s) | 1022, 1245, 1625, 3020, 3161, 3224, 3242 |
| Hpy188I | TCNGA | 8 cut(s) | 94, 333, 355, 699, 900, 1097, 1775, 2742 |
| Hpy99I | CGWCG | 3 cut(s) | 2675, 2815, 3164 |
| HpyAV | CCTTC | 6 cut(s) | 122, 815, 1312, 1841, 2432, 2527 |
| HpyCH4III | ACNGT | 4 cut(s) | 235, 1974, 2369, 3149 |
| HpyCH4IV | ACGT | 6 cut(s) | 1981, 2590, 2700, 2810, 2820, 3045 |
| HpyF10VI | GCNNNNNNNGC | 6 cut(s) | 32, 204, 1306, 1885, 2348, 2867 |
| HpyF3I | CTNAG | 3 cut(s) | 897, 1725, 2451 |
| HpySE526I | ACGT | 6 cut(s) | 1981, 2590, 2700, 2810, 2820, 3045 |
| Hsp92I | GRCGYC | 1 cut(s) | 2810 |
| HspAI | GCGC | 3 cut(s) | 1543, 2205, 3076 |
| Kpn2I | TCCGGA | 1 cut(s) | 715 |
| KpnI | GGTACC | 1 cut(s) | 2839 |
| Ksp22I | TGATCA | 1 cut(s) | 3232 |
| KspAI | GTTAAC | 1 cut(s) | 136 |
| LmnI | GCTCC | 3 cut(s) | 1306, 1425, 2170 |
| Lsp1109I | GCAGC | 3 cut(s) | 1382, 1933, 3149 |
| LweI | GCATC | 4 cut(s) | 169, 337, 359, 1030 |
| MaeI | CTAG | 8 cut(s) | 954, 1599, 1880, 2273, 2858, 3063, 3227, 3256 |
| MaeII | ACGT | 6 cut(s) | 1981, 2590, 2700, 2810, 2820, 3045 |
| MaeIII | GTNAC | 8 cut(s) | 268, 415, 933, 1634, 2090, 3008, 3239, 3251 |
| MfeI | CAATTG | 1 cut(s) | 2382 |
| MflI | RGATCY | 8 cut(s) | 94, 243, 741, 950, 1081, 1909, 2227, 2980 |
| MhlI | GDGCHC | 4 cut(s) | 1430, 2328, 2700, 3208 |
| MlyI | GAGTC | 3 cut(s) | 328, 1025, 2098 |
| MmeI | TCCRAC | 6 cut(s) | 1403, 1807, 2110, 2351, 2618, 3171 |
| Mph1103I | ATGCAT | 2 cut(s) | 352, 1205 |
| MroI | TCCGGA | 1 cut(s) | 715 |
| MroXI | GAANNNNTTC | 2 cut(s) | 774, 2757 |
| MslI | CAYNNNNRTG | 5 cut(s) | 168, 193, 1198, 1990, 2997 |
| MspA1I | CMGCKG | 1 cut(s) | 1373 |
| MspCI | CTTAAG | 1 cut(s) | 1301 |
| MspI | CCGG | 9 cut(s) | 716, 839, 1025, 1256, 1451, 1513, 1611, 2068, 3006 |
| MspR9I | CCNGG | 3 cut(s) | 579, 1257, 3006 |
| MunI | CAATTG | 1 cut(s) | 2382 |
| Mva1269I | GAATGC | 3 cut(s) | 175, 2294, 3139 |
| MvaI | CCWGG | 1 cut(s) | 579 |
| MvnI | CGCG | 2 cut(s) | 1651, 2337 |
| MwoI | GCNNNNNNNGC | 6 cut(s) | 32, 204, 1306, 1885, 2348, 2867 |
| NciI | CCSGG | 2 cut(s) | 1257, 3006 |
| NcoI | CCATGG | 2 cut(s) | 284, 1193 |
| NdeI | CATATG | 2 cut(s) | 1842, 2748 |
| NheI | GCTAGC | 1 cut(s) | 2857 |
| NlaIV | GGNNCC | 3 cut(s) | 894, 1176, 2837 |
| NmuCI | GTSAC | 5 cut(s) | 1634, 2090, 3008, 3239, 3251 |
| NsbI | TGCGCA | 2 cut(s) | 2206, 3077 |
| NsiI | ATGCAT | 2 cut(s) | 352, 1205 |
| NspI | RCATGY | 2 cut(s) | 416, 1449 |
| PceI | AGGCCT | 1 cut(s) | 1104 |
| PciI | ACATGT | 1 cut(s) | 412 |
| PcsI | WCGNNNNNNNCGW | 1 cut(s) | 2530 |
| PctI | GAATGC | 3 cut(s) | 175, 2294, 3139 |
| PdmI | GAANNNNTTC | 2 cut(s) | 774, 2757 |
| PfeI | GAWTC | 7 cut(s) | 79, 622, 719, 1349, 2471, 2932, 3167 |
| PkrI | GCNGC | 4 cut(s) | 1372, 1923, 2035, 3139 |
| PleI | GAGTC | 3 cut(s) | 327, 1025, 2097 |
| PmaCI | CACGTG | 1 cut(s) | 2701 |
| PmlI | CACGTG | 1 cut(s) | 2701 |
| PpsI | GAGTC | 3 cut(s) | 327, 1025, 2097 |
| Ppu21I | YACGTR | 2 cut(s) | 2701, 3046 |
| PpuMI | RGGWCCY | 1 cut(s) | 1244 |
| PscI | ACATGT | 1 cut(s) | 412 |
| PshAI | GACNNNNGTC | 1 cut(s) | 834 |
| Psp124BI | GAGCTC | 1 cut(s) | 3208 |
| Psp1406I | AACGTT | 1 cut(s) | 2820 |
| Psp5II | RGGWCCY | 1 cut(s) | 1244 |
| Psp6I | CCWGG | 1 cut(s) | 577 |
| PspCI | CACGTG | 1 cut(s) | 2701 |
| PspFI | CCCAGC | 1 cut(s) | 2395 |
| PspGI | CCWGG | 1 cut(s) | 577 |
| PspN4I | GGNNCC | 3 cut(s) | 894, 1176, 2837 |
| PspPI | GGNCC | 5 cut(s) | 648, 1244, 1383, 2354, 3193 |
| PspPPI | RGGWCCY | 1 cut(s) | 1244 |
| PstNI | CAGNNNCTG | 1 cut(s) | 1034 |
| PsuI | RGATCY | 8 cut(s) | 94, 243, 741, 950, 1081, 1909, 2227, 2980 |
| PvuII | CAGCTG | 1 cut(s) | 1373 |
| RsaI | GTAC | 8 cut(s) | 1064, 1144, 1984, 2256, 2589, 2725, 2837, 3067 |
| RsaNI | GTAC | 8 cut(s) | 1063, 1143, 1983, 2255, 2588, 2724, 2836, 3066 |
| RseI | CAYNNNNRTG | 5 cut(s) | 168, 193, 1198, 1990, 2997 |
| SacI | GAGCTC | 1 cut(s) | 3208 |
| SalI | GTCGAC | 1 cut(s) | 2507 |
| SatI | GCNGC | 4 cut(s) | 1371, 1922, 2034, 3138 |
| Sau96I | GGNCC | 5 cut(s) | 648, 1244, 1383, 2354, 3193 |
| ScaI | AGTACT | 2 cut(s) | 1144, 2725 |
| SchI | GAGTC | 3 cut(s) | 328, 1025, 2098 |
| ScrFI | CCNGG | 3 cut(s) | 579, 1257, 3006 |
| SduI | GDGCHC | 4 cut(s) | 1430, 2328, 2700, 3208 |
| SfaNI | GCATC | 4 cut(s) | 169, 337, 359, 1030 |
| SfcI | CTRYAG | 1 cut(s) | 1035 |
| SgrAI | CRCCGGYG | 1 cut(s) | 1512 |
| SinI | GGWCC | 4 cut(s) | 648, 1244, 1383, 3193 |
| SmiMI | CAYNNNNRTG | 5 cut(s) | 168, 193, 1198, 1990, 2997 |
| SmlI | CTYRAG | 3 cut(s) | 146, 1301, 2003 |
| SmoI | CTYRAG | 3 cut(s) | 146, 1301, 2003 |
| SpeI | ACTAGT | 1 cut(s) | 3062 |
| SseBI | AGGCCT | 1 cut(s) | 1104 |
| SsiI | CCGC | 4 cut(s) | 316, 1649, 2033, 2419 |
| SspI | AATATT | 3 cut(s) | 593, 712, 1900 |
| SspMI | CTAG | 8 cut(s) | 954, 1599, 1880, 2273, 2858, 3063, 3227, 3256 |
| SstI | GAGCTC | 1 cut(s) | 3208 |
| StuI | AGGCCT | 1 cut(s) | 1104 |
| StyD4I | CCNGG | 3 cut(s) | 577, 1255, 3004 |
| StyI | CCWWGG | 5 cut(s) | 284, 490, 929, 1193, 2912 |
| TaaI | ACNGT | 4 cut(s) | 235, 1974, 2369, 3149 |
| TaiI | ACGT | 6 cut(s) | 1984, 2593, 2703, 2813, 2823, 3048 |
| TaqI | TCGA | 4 cut(s) | 965, 1941, 2508, 3159 |
| TatI | WGTACW | 4 cut(s) | 1142, 2254, 2723, 3065 |
| TauI | GCSGC | 1 cut(s) | 2036 |
| TfiI | GAWTC | 7 cut(s) | 79, 622, 719, 1349, 2471, 2932, 3167 |
| TscAI | CASTG | 6 cut(s) | 27, 89, 632, 1510, 1637, 2364 |
| TseFI | GTSAC | 5 cut(s) | 1634, 2090, 3008, 3239, 3251 |
| TseI | GCWGC | 3 cut(s) | 1370, 1921, 3137 |
| Tsp45I | GTSAC | 5 cut(s) | 1634, 2090, 3008, 3239, 3251 |
| TspGWI | ACGGA | 7 cut(s) | 183, 312, 1167, 1275, 1587, 1944, 3188 |
| TspRI | CASTG | 6 cut(s) | 27, 89, 632, 1510, 1637, 2364 |
| Vha464I | CTTAAG | 1 cut(s) | 1301 |
| VneI | GTGCAC | 1 cut(s) | 2324 |
| VpaK11BI | GGWCC | 4 cut(s) | 648, 1244, 1383, 3193 |
| XapI | RAATTY | 8 cut(s) | 217, 1411, 1604, 1997, 2056, 2280, 2565, 2792 |
| XbaI | TCTAGA | 1 cut(s) | 953 |
| XceI | RCATGY | 2 cut(s) | 416, 1449 |
| XcmI | CCANNNNNNNNNTGG | 1 cut(s) | 1438 |
| XmiI | GTMKAC | 1 cut(s) | 2508 |
| XmnI | GAANNNNTTC | 2 cut(s) | 774, 2757 |
| XspI | CTAG | 8 cut(s) | 954, 1599, 1880, 2273, 2858, 3063, 3227, 3256 |
| ZraI | GACGTC | 1 cut(s) | 2811 |
| ZrmI | AGTACT | 2 cut(s) | 1144, 2725 |
| Zsp2I | ATGCAT | 2 cut(s) | 352, 1205 |