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| Enzyme | Recognition Site | Cut Count | Positions (bp) |
|---|---|---|---|
| AasI | GACNNNNNNGTC | 1 cut(s) | 544 |
| AclWI | GGATC | 1 cut(s) | 68 |
| AcsI | RAATTY | 2 cut(s) | 50, 473 |
| AdeI | CACNNNGTG | 1 cut(s) | 437 |
| AfiI | CCNNNNNNNGG | 1 cut(s) | 641 |
| AflIII | ACRYGT | 1 cut(s) | 112 |
| AgsI | TTSAA | 4 cut(s) | 296, 427, 472, 516 |
| AluBI | AGCT | 4 cut(s) | 177, 252, 299, 456 |
| AluI | AGCT | 4 cut(s) | 177, 252, 299, 456 |
| AlwI | GGATC | 1 cut(s) | 68 |
| ApeKI | GCWGC | 2 cut(s) | 68, 299 |
| ApoI | RAATTY | 2 cut(s) | 50, 473 |
| Asp700I | GAANNNNTTC | 1 cut(s) | 489 |
| AspS9I | GGNCC | 1 cut(s) | 546 |
| AvaII | GGWCC | 1 cut(s) | 546 |
| BbsI | GAAGAC | 1 cut(s) | 542 |
| BbvI | GCAGC | 2 cut(s) | 55, 286 |
| BccI | CCATC | 3 cut(s) | 191, 550, 648 |
| BclI | TGATCA | 1 cut(s) | 169 |
| BfaI | CTAG | 4 cut(s) | 213, 347, 407, 651 |
| BfmI | CTRYAG | 1 cut(s) | 282 |
| BglII | AGATCT | 1 cut(s) | 220 |
| BisI | GCNGC | 2 cut(s) | 69, 300 |
| BlsI | GCNGC | 2 cut(s) | 70, 301 |
| Bme18I | GGWCC | 1 cut(s) | 546 |
| BmgT120I | GGNCC | 1 cut(s) | 546 |
| BmiI | GGNNCC | 1 cut(s) | 547 |
| BmsI | GCATC | 4 cut(s) | 343, 498, 603, 632 |
| BpiI | GAAGAC | 1 cut(s) | 542 |
| BsaJI | CCNNGG | 1 cut(s) | 549 |
| Bsc4I | CCNNNNNNNGG | 1 cut(s) | 641 |
| BseDI | CCNNGG | 1 cut(s) | 549 |
| BseGI | GGATG | 4 cut(s) | 202, 313, 561, 594 |
| BseLI | CCNNNNNNNGG | 1 cut(s) | 641 |
| BseXI | GCAGC | 2 cut(s) | 55, 286 |
| BslI | CCNNNNNNNGG | 1 cut(s) | 641 |
| Bsp143I | GATC | 5 cut(s) | 11, 37, 73, 169, 220 |
| BspLI | GGNNCC | 1 cut(s) | 547 |
| BspPI | GGATC | 1 cut(s) | 68 |
| BssECI | CCNNGG | 1 cut(s) | 549 |
| BssMI | GATC | 5 cut(s) | 11, 37, 73, 169, 220 |
| BssT1I | CCWWGG | 1 cut(s) | 549 |
| Bst4CI | ACNGT | 1 cut(s) | 283 |
| BstC8I | GCNNGC | 1 cut(s) | 580 |
| BstDEI | CTNAG | 1 cut(s) | 393 |
| BstF5I | GGATG | 4 cut(s) | 202, 313, 561, 594 |
| BstKTI | GATC | 5 cut(s) | 14, 40, 76, 172, 223 |
| BstMBI | GATC | 5 cut(s) | 11, 37, 73, 169, 220 |
| BstNSI | RCATGY | 2 cut(s) | 116, 582 |
| BstSFI | CTRYAG | 1 cut(s) | 282 |
| BstV1I | GCAGC | 2 cut(s) | 55, 286 |
| BstV2I | GAAGAC | 1 cut(s) | 542 |
| BstX2I | RGATCY | 1 cut(s) | 220 |
| BstYI | RGATCY | 1 cut(s) | 220 |
| BtsCI | GGATG | 4 cut(s) | 202, 313, 561, 594 |
| BtsIMutI | CAGTG | 1 cut(s) | 279 |
| Cac8I | GCNNGC | 1 cut(s) | 580 |
| Cfr13I | GGNCC | 1 cut(s) | 546 |
| CspCI | CAANNNNNGTGG | 2 cut(s) | 422, 457 |
| CviAII | CATG | 4 cut(s) | 65, 113, 186, 579 |
| CviJI | RGCY | 5 cut(s) | 177, 205, 252, 299, 456 |
| CviKI_1 | RGCY | 5 cut(s) | 177, 205, 252, 299, 456 |
| DdeI | CTNAG | 1 cut(s) | 393 |
| DpnI | GATC | 5 cut(s) | 13, 39, 75, 171, 222 |
| DpnII | GATC | 5 cut(s) | 11, 37, 73, 169, 220 |
| DraIII | CACNNNGTG | 1 cut(s) | 437 |
| DrdI | GACNNNNNNGTC | 1 cut(s) | 544 |
| DseDI | GACNNNNNNGTC | 1 cut(s) | 544 |
| Eco130I | CCWWGG | 1 cut(s) | 549 |
| Eco47I | GGWCC | 1 cut(s) | 546 |
| EcoO109I | RGGNCCY | 1 cut(s) | 546 |
| EcoT14I | CCWWGG | 1 cut(s) | 549 |
| ErhI | CCWWGG | 1 cut(s) | 549 |
| FaeI | CATG | 4 cut(s) | 68, 116, 189, 582 |
| FalI | AAGNNNNNCTT | 2 cut(s) | 474, 506 |
| FatI | CATG | 4 cut(s) | 64, 112, 185, 578 |
| FbaI | TGATCA | 1 cut(s) | 169 |
| Fnu4HI | GCNGC | 2 cut(s) | 69, 300 |
| FokI | GGATG | 4 cut(s) | 209, 320, 568, 581 |
| Fsp4HI | GCNGC | 2 cut(s) | 69, 300 |
| FspBI | CTAG | 4 cut(s) | 213, 347, 407, 651 |
| GluI | GCNGC | 2 cut(s) | 69, 300 |
| Hin1II | CATG | 4 cut(s) | 68, 116, 189, 582 |
| HindIII | AAGCTT | 1 cut(s) | 454 |
| HinfI | GANTC | 2 cut(s) | 240, 329 |
| Hpy166II | GTNNAC | 2 cut(s) | 110, 390 |
| Hpy188I | TCNGA | 5 cut(s) | 16, 220, 413, 448, 619 |
| Hpy188III | TCNNGA | 2 cut(s) | 326, 651 |
| Hpy8I | GTNNAC | 2 cut(s) | 110, 390 |
| HpyAV | CCTTC | 2 cut(s) | 298, 522 |
| HpyCH4III | ACNGT | 1 cut(s) | 283 |
| HpyCH4V | TGCA | 2 cut(s) | 464, 594 |
| HpyF3I | CTNAG | 1 cut(s) | 393 |
| Hsp92II | CATG | 4 cut(s) | 68, 116, 189, 582 |
| Ksp22I | TGATCA | 1 cut(s) | 169 |
| Kzo9I | GATC | 5 cut(s) | 11, 37, 73, 169, 220 |
| LpnPI | CCDG | 4 cut(s) | 209, 229, 339, 360 |
| Lsp1109I | GCAGC | 2 cut(s) | 55, 286 |
| LweI | GCATC | 4 cut(s) | 343, 498, 603, 632 |
| MaeI | CTAG | 4 cut(s) | 213, 347, 407, 651 |
| MaeIII | GTNAC | 1 cut(s) | 181 |
| MalI | GATC | 5 cut(s) | 13, 39, 75, 171, 222 |
| MboI | GATC | 5 cut(s) | 11, 37, 73, 169, 220 |
| MboII | GAAGA | 3 cut(s) | 21, 362, 547 |
| MflI | RGATCY | 1 cut(s) | 220 |
| MluCI | AATT | 2 cut(s) | 50, 473 |
| MnlI | CCTC | 1 cut(s) | 130 |
| MroXI | GAANNNNTTC | 1 cut(s) | 489 |
| MseI | TTAA | 2 cut(s) | 117, 384 |
| MslI | CAYNNNNRTG | 2 cut(s) | 269, 628 |
| NdeII | GATC | 5 cut(s) | 11, 37, 73, 169, 220 |
| NlaIII | CATG | 4 cut(s) | 68, 116, 189, 582 |
| NlaIV | GGNNCC | 1 cut(s) | 547 |
| NmeAIII | GCCGAG | 1 cut(s) | 382 |
| NspI | RCATGY | 2 cut(s) | 116, 582 |
| PaeI | GCATGC | 1 cut(s) | 582 |
| PciI | ACATGT | 1 cut(s) | 112 |
| PdmI | GAANNNNTTC | 1 cut(s) | 489 |
| PfeI | GAWTC | 2 cut(s) | 240, 329 |
| PkrI | GCNGC | 2 cut(s) | 70, 301 |
| PpuMI | RGGWCCY | 1 cut(s) | 546 |
| PscI | ACATGT | 1 cut(s) | 112 |
| Psp5II | RGGWCCY | 1 cut(s) | 546 |
| PspN4I | GGNNCC | 1 cut(s) | 547 |
| PspPI | GGNCC | 1 cut(s) | 546 |
| PspPPI | RGGWCCY | 1 cut(s) | 546 |
| PsuI | RGATCY | 1 cut(s) | 220 |
| RseI | CAYNNNNRTG | 2 cut(s) | 269, 628 |
| SaqAI | TTAA | 2 cut(s) | 117, 384 |
| SatI | GCNGC | 2 cut(s) | 69, 300 |
| Sau3AI | GATC | 5 cut(s) | 11, 37, 73, 169, 220 |
| Sau96I | GGNCC | 1 cut(s) | 546 |
| SetI | ASST | 7 cut(s) | 141, 179, 254, 301, 439, 458, 521 |
| SfaNI | GCATC | 4 cut(s) | 343, 498, 603, 632 |
| SfcI | CTRYAG | 1 cut(s) | 282 |
| SinI | GGWCC | 1 cut(s) | 546 |
| SmiMI | CAYNNNNRTG | 2 cut(s) | 269, 628 |
| SphI | GCATGC | 1 cut(s) | 582 |
| Sse9I | AATT | 2 cut(s) | 50, 473 |
| SspMI | CTAG | 4 cut(s) | 213, 347, 407, 651 |
| StyI | CCWWGG | 1 cut(s) | 549 |
| TaaI | ACNGT | 1 cut(s) | 283 |
| TasI | AATT | 2 cut(s) | 50, 473 |
| TfiI | GAWTC | 2 cut(s) | 240, 329 |
| Tru1I | TTAA | 2 cut(s) | 117, 384 |
| Tru9I | TTAA | 2 cut(s) | 117, 384 |
| TscAI | CASTG | 1 cut(s) | 286 |
| TseI | GCWGC | 2 cut(s) | 68, 299 |
| TspDTI | ATGAA | 4 cut(s) | 33, 324, 515, 540 |
| TspRI | CASTG | 1 cut(s) | 286 |
| VpaK11BI | GGWCC | 1 cut(s) | 546 |
| XapI | RAATTY | 2 cut(s) | 50, 473 |
| XbaI | TCTAGA | 1 cut(s) | 650 |
| XceI | RCATGY | 2 cut(s) | 116, 582 |
| XmnI | GAANNNNTTC | 1 cut(s) | 489 |
| XspI | CTAG | 4 cut(s) | 213, 347, 407, 651 |