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| Enzyme | Recognition Site | Cut Count | Positions (bp) |
|---|---|---|---|
| AccB1I | GGYRCC | 1 cut(s) | 811 |
| AclWI | GGATC | 2 cut(s) | 184, 722 |
| AcoI | YGGCCR | 1 cut(s) | 630 |
| AcsI | RAATTY | 2 cut(s) | 219, 361 |
| AcyI | GRCGYC | 1 cut(s) | 812 |
| AfaI | GTAC | 1 cut(s) | 409 |
| AfiI | CCNNNNNNNGG | 1 cut(s) | 821 |
| AgsI | TTSAA | 5 cut(s) | 155, 173, 333, 398, 920 |
| AjuI | GAANNNNNNNTTGG | 2 cut(s) | 338, 370 |
| AluBI | AGCT | 3 cut(s) | 38, 401, 792 |
| AluI | AGCT | 3 cut(s) | 38, 401, 792 |
| Alw21I | GWGCWC | 1 cut(s) | 552 |
| Alw26I | GTCTC | 1 cut(s) | 477 |
| Alw44I | GTGCAC | 1 cut(s) | 548 |
| AlwI | GGATC | 2 cut(s) | 184, 722 |
| AoxI | GGCC | 4 cut(s) | 193, 452, 630, 651 |
| ApaLI | GTGCAC | 1 cut(s) | 548 |
| ApeKI | GCWGC | 1 cut(s) | 35 |
| ApoI | RAATTY | 2 cut(s) | 219, 361 |
| AseI | ATTAAT | 1 cut(s) | 492 |
| Asp700I | GAANNNNTTC | 1 cut(s) | 52 |
| AspLEI | GCGC | 1 cut(s) | 814 |
| AspS9I | GGNCC | 3 cut(s) | 7, 452, 651 |
| AsuHPI | GGTGA | 1 cut(s) | 682 |
| AvaII | GGWCC | 1 cut(s) | 7 |
| BaeGI | GKGCMC | 1 cut(s) | 552 |
| BanI | GGYRCC | 1 cut(s) | 811 |
| Bbv12I | GWGCWC | 1 cut(s) | 552 |
| BbvI | GCAGC | 1 cut(s) | 47 |
| BccI | CCATC | 2 cut(s) | 677, 892 |
| BceAI | ACGGC | 2 cut(s) | 617, 825 |
| BclI | TGATCA | 2 cut(s) | 310, 874 |
| BcoDI | GTCTC | 1 cut(s) | 477 |
| BfaI | CTAG | 2 cut(s) | 341, 771 |
| BfoI | RGCGCY | 1 cut(s) | 815 |
| BisI | GCNGC | 1 cut(s) | 36 |
| BlpI | GCTNAGC | 1 cut(s) | 753 |
| BlsI | GCNGC | 1 cut(s) | 37 |
| BmcAI | AGTACT | 1 cut(s) | 409 |
| Bme18I | GGWCC | 1 cut(s) | 7 |
| BmgT120I | GGNCC | 3 cut(s) | 7, 452, 651 |
| BmiI | GGNNCC | 2 cut(s) | 29, 813 |
| BmsI | GCATC | 1 cut(s) | 244 |
| BpmI | CTGGAG | 1 cut(s) | 24 |
| Bpu1102I | GCTNAGC | 1 cut(s) | 753 |
| BsaHI | GRCGYC | 1 cut(s) | 812 |
| BsaJI | CCNNGG | 1 cut(s) | 455 |
| Bsc4I | CCNNNNNNNGG | 1 cut(s) | 821 |
| Bse3DI | GCAATG | 1 cut(s) | 474 |
| BseDI | CCNNGG | 1 cut(s) | 455 |
| BseGI | GGATG | 1 cut(s) | 916 |
| BseLI | CCNNNNNNNGG | 1 cut(s) | 821 |
| BseMI | GCAATG | 1 cut(s) | 474 |
| BseSI | GKGCMC | 1 cut(s) | 552 |
| BseXI | GCAGC | 1 cut(s) | 47 |
| BsgI | GTGCAG | 2 cut(s) | 54, 873 |
| BshFI | GGCC | 4 cut(s) | 195, 454, 632, 653 |
| BshNI | GGYRCC | 1 cut(s) | 811 |
| BsiHKAI | GWGCWC | 1 cut(s) | 552 |
| BslI | CCNNNNNNNGG | 1 cut(s) | 821 |
| BsmAI | GTCTC | 1 cut(s) | 477 |
| BsnI | GGCC | 4 cut(s) | 195, 454, 632, 653 |
| Bsp1286I | GDGCHC | 1 cut(s) | 552 |
| Bsp143I | GATC | 6 cut(s) | 176, 197, 310, 727, 832, 874 |
| Bsp1720I | GCTNAGC | 1 cut(s) | 753 |
| BspANI | GGCC | 4 cut(s) | 195, 454, 632, 653 |
| BspHI | TCATGA | 1 cut(s) | 706 |
| BspLI | GGNNCC | 2 cut(s) | 29, 813 |
| BspPI | GGATC | 2 cut(s) | 184, 722 |
| BspT107I | GGYRCC | 1 cut(s) | 811 |
| BsrDI | GCAATG | 1 cut(s) | 474 |
| BssECI | CCNNGG | 1 cut(s) | 455 |
| BssMI | GATC | 6 cut(s) | 176, 197, 310, 727, 832, 874 |
| BssNI | GRCGYC | 1 cut(s) | 812 |
| BssT1I | CCWWGG | 1 cut(s) | 455 |
| Bst4CI | ACNGT | 5 cut(s) | 32, 207, 257, 503, 871 |
| Bst6I | CTCTTC | 1 cut(s) | 288 |
| BstACI | GRCGYC | 1 cut(s) | 812 |
| BstDEI | CTNAG | 5 cut(s) | 67, 384, 513, 694, 753 |
| BstF5I | GGATG | 1 cut(s) | 916 |
| BstH2I | RGCGCY | 1 cut(s) | 815 |
| BstHHI | GCGC | 1 cut(s) | 814 |
| BstKTI | GATC | 6 cut(s) | 179, 200, 313, 730, 835, 877 |
| BstMAI | GTCTC | 1 cut(s) | 477 |
| BstMBI | GATC | 6 cut(s) | 176, 197, 310, 727, 832, 874 |
| BstNSI | RCATGY | 1 cut(s) | 752 |
| BstSLI | GKGCMC | 1 cut(s) | 552 |
| BstV1I | GCAGC | 1 cut(s) | 47 |
| BstX2I | RGATCY | 1 cut(s) | 727 |
| BstYI | RGATCY | 1 cut(s) | 727 |
| BsuRI | GGCC | 4 cut(s) | 195, 454, 632, 653 |
| BtsCI | GGATG | 1 cut(s) | 916 |
| BtsI | GCAGTG | 1 cut(s) | 182 |
| BtsIMutI | CAGTG | 1 cut(s) | 182 |
| CciI | TCATGA | 1 cut(s) | 706 |
| CfoI | GCGC | 1 cut(s) | 814 |
| Cfr13I | GGNCC | 3 cut(s) | 7, 452, 651 |
| Csp6I | GTAC | 1 cut(s) | 408 |
| CviAII | CATG | 4 cut(s) | 103, 658, 707, 749 |
| CviQI | GTAC | 1 cut(s) | 408 |
| DdeI | CTNAG | 5 cut(s) | 67, 384, 513, 694, 753 |
| DinI | GGCGCC | 1 cut(s) | 813 |
| DpnI | GATC | 6 cut(s) | 178, 199, 312, 729, 834, 876 |
| DpnII | GATC | 6 cut(s) | 176, 197, 310, 727, 832, 874 |
| EaeI | YGGCCR | 1 cut(s) | 630 |
| Eam1104I | CTCTTC | 1 cut(s) | 288 |
| EarI | CTCTTC | 1 cut(s) | 288 |
| Eco130I | CCWWGG | 1 cut(s) | 455 |
| Eco47I | GGWCC | 1 cut(s) | 7 |
| EcoO109I | RGGNCCY | 1 cut(s) | 7 |
| EcoT14I | CCWWGG | 1 cut(s) | 455 |
| EgeI | GGCGCC | 1 cut(s) | 813 |
| EheI | GGCGCC | 1 cut(s) | 813 |
| ErhI | CCWWGG | 1 cut(s) | 455 |
| FaeI | CATG | 4 cut(s) | 106, 661, 710, 752 |
| FatI | CATG | 4 cut(s) | 102, 657, 706, 748 |
| FbaI | TGATCA | 2 cut(s) | 310, 874 |
| Fnu4HI | GCNGC | 1 cut(s) | 36 |
| FokI | GGATG | 1 cut(s) | 923 |
| Fsp4HI | GCNGC | 1 cut(s) | 36 |
| FspBI | CTAG | 2 cut(s) | 341, 771 |
| GlaI | GCGC | 1 cut(s) | 813 |
| GluI | GCNGC | 1 cut(s) | 36 |
| GsuI | CTGGAG | 1 cut(s) | 24 |
| HaeII | RGCGCY | 1 cut(s) | 815 |
| HaeIII | GGCC | 4 cut(s) | 195, 454, 632, 653 |
| HhaI | GCGC | 1 cut(s) | 814 |
| Hin1I | GRCGYC | 1 cut(s) | 812 |
| Hin1II | CATG | 4 cut(s) | 106, 661, 710, 752 |
| Hin6I | GCGC | 1 cut(s) | 812 |
| HinP1I | GCGC | 1 cut(s) | 812 |
| HincII | GTYRAC | 3 cut(s) | 210, 700, 807 |
| HindII | GTYRAC | 3 cut(s) | 210, 700, 807 |
| HinfI | GANTC | 4 cut(s) | 329, 419, 687, 920 |
| HpaI | GTTAAC | 1 cut(s) | 700 |
| HphI | GGTGA | 1 cut(s) | 682 |
| Hpy166II | GTNNAC | 5 cut(s) | 131, 210, 550, 700, 807 |
| Hpy188I | TCNGA | 3 cut(s) | 58, 310, 427 |
| Hpy188III | TCNNGA | 6 cut(s) | 41, 260, 707, 836, 878, 924 |
| Hpy8I | GTNNAC | 5 cut(s) | 131, 210, 550, 700, 807 |
| HpyAV | CCTTC | 4 cut(s) | 38, 167, 704, 713 |
| HpyCH4III | ACNGT | 5 cut(s) | 32, 207, 257, 503, 871 |
| HpyCH4V | TGCA | 7 cut(s) | 35, 235, 352, 379, 467, 550, 890 |
| HpyF3I | CTNAG | 5 cut(s) | 67, 384, 513, 694, 753 |
| Hsp92I | GRCGYC | 1 cut(s) | 812 |
| Hsp92II | CATG | 4 cut(s) | 106, 661, 710, 752 |
| HspAI | GCGC | 1 cut(s) | 812 |
| KasI | GGCGCC | 1 cut(s) | 811 |
| Ksp22I | TGATCA | 2 cut(s) | 310, 874 |
| KspAI | GTTAAC | 1 cut(s) | 700 |
| Kzo9I | GATC | 6 cut(s) | 176, 197, 310, 727, 832, 874 |
| LmnI | GCTCC | 1 cut(s) | 43 |
| LpnPI | CCDG | 4 cut(s) | 54, 651, 778, 802 |
| Lsp1109I | GCAGC | 1 cut(s) | 47 |
| LweI | GCATC | 1 cut(s) | 244 |
| MaeI | CTAG | 2 cut(s) | 341, 771 |
| MalI | GATC | 6 cut(s) | 178, 199, 312, 729, 834, 876 |
| MboI | GATC | 6 cut(s) | 176, 197, 310, 727, 832, 874 |
| MboII | GAAGA | 2 cut(s) | 305, 685 |
| MflI | RGATCY | 1 cut(s) | 727 |
| MhlI | GDGCHC | 1 cut(s) | 552 |
| MluCI | AATT | 5 cut(s) | 168, 219, 361, 574, 842 |
| Mly113I | GGCGCC | 1 cut(s) | 812 |
| MlyI | GAGTC | 1 cut(s) | 428 |
| MnlI | CCTC | 3 cut(s) | 274, 511, 815 |
| MroXI | GAANNNNTTC | 1 cut(s) | 52 |
| MseI | TTAA | 9 cut(s) | 12, 252, 299, 390, 447, 492, 699, 716, 740 |
| MslI | CAYNNNNRTG | 1 cut(s) | 240 |
| MspA1I | CMGCKG | 1 cut(s) | 792 |
| NarI | GGCGCC | 1 cut(s) | 812 |
| NdeII | GATC | 6 cut(s) | 176, 197, 310, 727, 832, 874 |
| NlaIII | CATG | 4 cut(s) | 106, 661, 710, 752 |
| NlaIV | GGNNCC | 2 cut(s) | 29, 813 |
| NspI | RCATGY | 1 cut(s) | 752 |
| PagI | TCATGA | 1 cut(s) | 706 |
| PdmI | GAANNNNTTC | 1 cut(s) | 52 |
| PfeI | GAWTC | 3 cut(s) | 329, 687, 920 |
| PkrI | GCNGC | 1 cut(s) | 37 |
| PleI | GAGTC | 1 cut(s) | 427 |
| PluTI | GGCGCC | 1 cut(s) | 815 |
| PpsI | GAGTC | 1 cut(s) | 427 |
| PpuMI | RGGWCCY | 1 cut(s) | 7 |
| PshBI | ATTAAT | 1 cut(s) | 492 |
| Psp5II | RGGWCCY | 1 cut(s) | 7 |
| PspN4I | GGNNCC | 2 cut(s) | 29, 813 |
| PspPI | GGNCC | 3 cut(s) | 7, 452, 651 |
| PspPPI | RGGWCCY | 1 cut(s) | 7 |
| PsuI | RGATCY | 1 cut(s) | 727 |
| PvuII | CAGCTG | 1 cut(s) | 792 |
| RsaI | GTAC | 1 cut(s) | 409 |
| RsaNI | GTAC | 1 cut(s) | 408 |
| RseI | CAYNNNNRTG | 1 cut(s) | 240 |
| SaqAI | TTAA | 9 cut(s) | 12, 252, 299, 390, 447, 492, 699, 716, 740 |
| SatI | GCNGC | 1 cut(s) | 36 |
| Sau3AI | GATC | 6 cut(s) | 176, 197, 310, 727, 832, 874 |
| Sau96I | GGNCC | 3 cut(s) | 7, 452, 651 |
| ScaI | AGTACT | 1 cut(s) | 409 |
| SchI | GAGTC | 1 cut(s) | 428 |
| SduI | GDGCHC | 1 cut(s) | 552 |
| SfaNI | GCATC | 1 cut(s) | 244 |
| SfoI | GGCGCC | 1 cut(s) | 813 |
| SinI | GGWCC | 1 cut(s) | 7 |
| SmiMI | CAYNNNNRTG | 1 cut(s) | 240 |
| Sse9I | AATT | 5 cut(s) | 168, 219, 361, 574, 842 |
| SspDI | GGCGCC | 1 cut(s) | 811 |
| SspMI | CTAG | 2 cut(s) | 341, 771 |
| StyI | CCWWGG | 1 cut(s) | 455 |
| TaaI | ACNGT | 5 cut(s) | 32, 207, 257, 503, 871 |
| TaqI | TCGA | 3 cut(s) | 179, 417, 837 |
| TasI | AATT | 5 cut(s) | 168, 219, 361, 574, 842 |
| TatI | WGTACW | 1 cut(s) | 407 |
| TfiI | GAWTC | 3 cut(s) | 329, 687, 920 |
| Tru1I | TTAA | 9 cut(s) | 12, 252, 299, 390, 447, 492, 699, 716, 740 |
| Tru9I | TTAA | 9 cut(s) | 12, 252, 299, 390, 447, 492, 699, 716, 740 |
| TscAI | CASTG | 1 cut(s) | 189 |
| TseI | GCWGC | 1 cut(s) | 35 |
| TspDTI | ATGAA | 8 cut(s) | 17, 119, 231, 275, 497, 695, 723, 795 |
| TspGWI | ACGGA | 2 cut(s) | 154, 614 |
| TspRI | CASTG | 1 cut(s) | 189 |
| VneI | GTGCAC | 1 cut(s) | 548 |
| VpaK11BI | GGWCC | 1 cut(s) | 7 |
| VspI | ATTAAT | 1 cut(s) | 492 |
| XapI | RAATTY | 2 cut(s) | 219, 361 |
| XceI | RCATGY | 1 cut(s) | 752 |
| XmnI | GAANNNNTTC | 1 cut(s) | 52 |
| XspI | CTAG | 2 cut(s) | 341, 771 |
| ZrmI | AGTACT | 1 cut(s) | 409 |