TdcA1-ORF2 protein
| Domain Name | Pfam ID | Position | E-value | Description |
|---|---|---|---|---|
| DUF4218 | PF13960 | 86 - 188 | 3.9e-39 | Domain of unknown function (DUF4218) |
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| Enzyme | Recognition Site | Cut Count | Positions (bp) |
|---|---|---|---|
| Acc16I | TGCGCA | 1 cut(s) | 522 |
| AccII | CGCG | 1 cut(s) | 488 |
| AciI | CCGC | 4 cut(s) | 486, 575, 813, 821 |
| AclWI | GGATC | 2 cut(s) | 373, 866 |
| AcsI | RAATTY | 4 cut(s) | 326, 349, 645, 837 |
| AcuI | CTGAAG | 2 cut(s) | 63, 528 |
| AfaI | GTAC | 4 cut(s) | 134, 417, 597, 782 |
| AfiI | CCNNNNNNNGG | 5 cut(s) | 214, 444, 699, 700, 790 |
| AgeI | ACCGGT | 1 cut(s) | 407 |
| AgsI | TTSAA | 6 cut(s) | 142, 565, 607, 635, 728, 767 |
| AjuI | GAANNNNNNNTTGG | 2 cut(s) | 435, 467 |
| AluBI | AGCT | 4 cut(s) | 11, 506, 682, 853 |
| AluI | AGCT | 4 cut(s) | 11, 506, 682, 853 |
| Alw26I | GTCTC | 3 cut(s) | 179, 450, 625 |
| AlwI | GGATC | 2 cut(s) | 373, 866 |
| Ama87I | CYCGRG | 2 cut(s) | 389, 776 |
| ApoI | RAATTY | 4 cut(s) | 326, 349, 645, 837 |
| AseI | ATTAAT | 1 cut(s) | 933 |
| AsiGI | ACCGGT | 1 cut(s) | 407 |
| AspLEI | GCGC | 2 cut(s) | 490, 523 |
| AspS9I | GGNCC | 1 cut(s) | 410 |
| AsuC2I | CCSGG | 3 cut(s) | 103, 119, 290 |
| AsuHPI | GGTGA | 3 cut(s) | 362, 526, 782 |
| AvaI | CYCGRG | 2 cut(s) | 389, 776 |
| AvaII | GGWCC | 1 cut(s) | 410 |
| BbsI | GAAGAC | 1 cut(s) | 900 |
| BccI | CCATC | 2 cut(s) | 390, 753 |
| BciVI | GTATCC | 2 cut(s) | 84, 444 |
| BcnI | CCSGG | 3 cut(s) | 103, 119, 290 |
| BcoDI | GTCTC | 3 cut(s) | 179, 450, 625 |
| BfaI | CTAG | 1 cut(s) | 683 |
| BfuI | GTATCC | 2 cut(s) | 84, 444 |
| BisI | GCNGC | 1 cut(s) | 814 |
| BlsI | GCNGC | 1 cut(s) | 815 |
| Bme1390I | CCNGG | 3 cut(s) | 103, 119, 290 |
| Bme18I | GGWCC | 1 cut(s) | 410 |
| BmeT110I | CYCGRG | 2 cut(s) | 389, 776 |
| BmgT120I | GGNCC | 1 cut(s) | 410 |
| BmiI | GGNNCC | 1 cut(s) | 222 |
| BmrFI | CCNGG | 3 cut(s) | 103, 119, 290 |
| BpiI | GAAGAC | 1 cut(s) | 900 |
| BpmI | CTGGAG | 1 cut(s) | 607 |
| Bpu10I | CCTNAGC | 1 cut(s) | 854 |
| BpuMI | CCSGG | 3 cut(s) | 103, 119, 290 |
| BsaBI | GATNNNNATC | 2 cut(s) | 870, 876 |
| BsaJI | CCNNGG | 1 cut(s) | 438 |
| BsaWI | WCCGGW | 1 cut(s) | 407 |
| Bsc4I | CCNNNNNNNGG | 5 cut(s) | 214, 444, 699, 700, 790 |
| Bse118I | RCCGGY | 2 cut(s) | 407, 586 |
| Bse1I | ACTGG | 4 cut(s) | 413, 624, 701, 737 |
| Bse3DI | GCAATG | 1 cut(s) | 687 |
| Bse8I | GATNNNNATC | 2 cut(s) | 870, 876 |
| BseDI | CCNNGG | 1 cut(s) | 438 |
| BseGI | GGATG | 5 cut(s) | 63, 435, 503, 741, 967 |
| BseJI | GATNNNNATC | 2 cut(s) | 870, 876 |
| BseLI | CCNNNNNNNGG | 5 cut(s) | 214, 444, 699, 700, 790 |
| BseMI | GCAATG | 1 cut(s) | 687 |
| BseNI | ACTGG | 4 cut(s) | 413, 624, 701, 737 |
| BseYI | CCCAGC | 1 cut(s) | 816 |
| Bsh1236I | CGCG | 1 cut(s) | 488 |
| Bsh1285I | CGRYCG | 1 cut(s) | 197 |
| BshTI | ACCGGT | 1 cut(s) | 407 |
| BsiEI | CGRYCG | 1 cut(s) | 197 |
| BsiHKCI | CYCGRG | 2 cut(s) | 389, 776 |
| BsiSI | CCGG | 5 cut(s) | 103, 118, 289, 408, 587 |
| BslFI | GGGAC | 1 cut(s) | 134 |
| BslI | CCNNNNNNNGG | 5 cut(s) | 214, 444, 699, 700, 790 |
| BsmAI | GTCTC | 3 cut(s) | 179, 450, 625 |
| BsmBI | CGTCTC | 1 cut(s) | 179 |
| BsmFI | GGGAC | 1 cut(s) | 134 |
| BsmI | GAATGC | 1 cut(s) | 533 |
| BsoBI | CYCGRG | 2 cut(s) | 389, 776 |
| Bsp143I | GATC | 4 cut(s) | 283, 378, 772, 871 |
| Bsp19I | CCATGG | 1 cut(s) | 438 |
| BspACI | CCGC | 4 cut(s) | 486, 575, 813, 821 |
| BspFNI | CGCG | 1 cut(s) | 488 |
| BspHI | TCATGA | 1 cut(s) | 148 |
| BspLI | GGNNCC | 1 cut(s) | 222 |
| BspPI | GGATC | 2 cut(s) | 373, 866 |
| BspQI | GCTCTTC | 1 cut(s) | 843 |
| BsrDI | GCAATG | 1 cut(s) | 687 |
| BsrFI | RCCGGY | 2 cut(s) | 407, 586 |
| BsrI | ACTGG | 4 cut(s) | 413, 624, 701, 737 |
| BssAI | RCCGGY | 2 cut(s) | 407, 586 |
| BssECI | CCNNGG | 1 cut(s) | 438 |
| BssMI | GATC | 4 cut(s) | 283, 378, 772, 871 |
| BssT1I | CCWWGG | 1 cut(s) | 438 |
| Bst4CI | ACNGT | 4 cut(s) | 22, 155, 198, 716 |
| Bst6I | CTCTTC | 3 cut(s) | 137, 182, 843 |
| BstAPI | GCANNNNNTGC | 3 cut(s) | 400, 518, 583 |
| BstDEI | CTNAG | 2 cut(s) | 854, 981 |
| BstDSI | CCRYGG | 1 cut(s) | 438 |
| BstF5I | GGATG | 5 cut(s) | 63, 435, 503, 741, 967 |
| BstFNI | CGCG | 1 cut(s) | 488 |
| BstHHI | GCGC | 2 cut(s) | 490, 523 |
| BstKTI | GATC | 4 cut(s) | 286, 381, 775, 874 |
| BstMAI | GTCTC | 3 cut(s) | 179, 450, 625 |
| BstMBI | GATC | 4 cut(s) | 283, 378, 772, 871 |
| BstMCI | CGRYCG | 1 cut(s) | 197 |
| BstMWI | GCNNNNNNNGC | 3 cut(s) | 400, 518, 583 |
| BstSCI | CCNGG | 3 cut(s) | 101, 117, 288 |
| BstUI | CGCG | 1 cut(s) | 488 |
| BstV2I | GAAGAC | 1 cut(s) | 900 |
| BsuI | GTATCC | 2 cut(s) | 84, 444 |
| BtgI | CCRYGG | 1 cut(s) | 438 |
| BtgZI | GCGATG | 1 cut(s) | 918 |
| BtsCI | GGATG | 5 cut(s) | 63, 435, 503, 741, 967 |
| BtsIMutI | CAGTG | 2 cut(s) | 631, 694 |
| CciI | TCATGA | 1 cut(s) | 148 |
| CfoI | GCGC | 2 cut(s) | 490, 523 |
| Cfr10I | RCCGGY | 2 cut(s) | 407, 586 |
| Cfr13I | GGNCC | 1 cut(s) | 410 |
| CseI | GACGC | 1 cut(s) | 520 |
| Csp6I | GTAC | 4 cut(s) | 133, 416, 596, 781 |
| CspAI | ACCGGT | 1 cut(s) | 407 |
| CviAII | CATG | 7 cut(s) | 149, 319, 364, 439, 541, 583, 677 |
| CviQI | GTAC | 4 cut(s) | 133, 416, 596, 781 |
| DdeI | CTNAG | 2 cut(s) | 854, 981 |
| DpnI | GATC | 4 cut(s) | 285, 380, 774, 873 |
| DpnII | GATC | 4 cut(s) | 283, 378, 772, 871 |
| Eam1104I | CTCTTC | 3 cut(s) | 137, 182, 843 |
| EarI | CTCTTC | 3 cut(s) | 137, 182, 843 |
| Eco130I | CCWWGG | 1 cut(s) | 438 |
| Eco47I | GGWCC | 1 cut(s) | 410 |
| Eco57I | CTGAAG | 2 cut(s) | 63, 528 |
| Eco88I | CYCGRG | 2 cut(s) | 389, 776 |
| EcoRI | GAATTC | 1 cut(s) | 837 |
| EcoT14I | CCWWGG | 1 cut(s) | 438 |
| ErhI | CCWWGG | 1 cut(s) | 438 |
| Esp3I | CGTCTC | 1 cut(s) | 179 |
| FaeI | CATG | 7 cut(s) | 152, 322, 367, 442, 544, 586, 680 |
| FaqI | GGGAC | 1 cut(s) | 134 |
| FatI | CATG | 7 cut(s) | 148, 318, 363, 438, 540, 582, 676 |
| FauI | CCCGC | 1 cut(s) | 814 |
| Fnu4HI | GCNGC | 1 cut(s) | 814 |
| FokI | GGATG | 5 cut(s) | 70, 442, 510, 728, 974 |
| Fsp4HI | GCNGC | 1 cut(s) | 814 |
| FspBI | CTAG | 1 cut(s) | 683 |
| FspI | TGCGCA | 1 cut(s) | 522 |
| GlaI | GCGC | 2 cut(s) | 489, 522 |
| GluI | GCNGC | 1 cut(s) | 814 |
| GsaI | CCCAGC | 1 cut(s) | 820 |
| GsuI | CTGGAG | 1 cut(s) | 607 |
| HapII | CCGG | 5 cut(s) | 103, 118, 289, 408, 587 |
| HgaI | GACGC | 1 cut(s) | 520 |
| HhaI | GCGC | 2 cut(s) | 490, 523 |
| Hin1II | CATG | 7 cut(s) | 152, 322, 367, 442, 544, 586, 680 |
| Hin6I | GCGC | 2 cut(s) | 488, 521 |
| HinP1I | GCGC | 2 cut(s) | 488, 521 |
| HinfI | GANTC | 5 cut(s) | 145, 656, 896, 953, 965 |
| HpaII | CCGG | 5 cut(s) | 103, 118, 289, 408, 587 |
| HphI | GGTGA | 3 cut(s) | 362, 526, 782 |
| Hpy166II | GTNNAC | 2 cut(s) | 112, 418 |
| Hpy188I | TCNGA | 4 cut(s) | 283, 940, 961, 970 |
| Hpy188III | TCNNGA | 8 cut(s) | 149, 250, 389, 719, 758, 776, 842, 881 |
| Hpy8I | GTNNAC | 2 cut(s) | 112, 418 |
| HpyAV | CCTTC | 3 cut(s) | 87, 212, 559 |
| HpyCH4III | ACNGT | 4 cut(s) | 22, 155, 198, 716 |
| HpyCH4IV | ACGT | 1 cut(s) | 172 |
| HpyCH4V | TGCA | 4 cut(s) | 89, 261, 298, 670 |
| HpyF10VI | GCNNNNNNNGC | 3 cut(s) | 400, 518, 583 |
| HpyF3I | CTNAG | 2 cut(s) | 854, 981 |
| HpySE526I | ACGT | 1 cut(s) | 172 |
| Hsp92II | CATG | 7 cut(s) | 152, 322, 367, 442, 544, 586, 680 |
| HspAI | GCGC | 2 cut(s) | 488, 521 |
| Kzo9I | GATC | 4 cut(s) | 283, 378, 772, 871 |
| LguI | GCTCTTC | 1 cut(s) | 843 |
| LmnI | GCTCC | 3 cut(s) | 16, 220, 557 |
| MaeI | CTAG | 1 cut(s) | 683 |
| MaeII | ACGT | 1 cut(s) | 172 |
| MaeIII | GTNAC | 1 cut(s) | 532 |
| MalI | GATC | 4 cut(s) | 285, 380, 774, 873 |
| MboI | GATC | 4 cut(s) | 283, 378, 772, 871 |
| MboII | GAAGA | 6 cut(s) | 49, 154, 169, 377, 860, 905 |
| MfeI | CAATTG | 1 cut(s) | 395 |
| MluCI | AATT | 8 cut(s) | 45, 326, 349, 395, 645, 837, 930, 934 |
| MlyI | GAGTC | 4 cut(s) | 154, 650, 890, 947 |
| MnlI | CCTC | 6 cut(s) | 15, 295, 327, 354, 378, 901 |
| MseI | TTAA | 2 cut(s) | 711, 933 |
| MslI | CAYNNNNRTG | 2 cut(s) | 428, 539 |
| MspI | CCGG | 5 cut(s) | 103, 118, 289, 408, 587 |
| MspR9I | CCNGG | 3 cut(s) | 103, 119, 290 |
| MunI | CAATTG | 1 cut(s) | 395 |
| Mva1269I | GAATGC | 1 cut(s) | 533 |
| MvnI | CGCG | 1 cut(s) | 488 |
| MwoI | GCNNNNNNNGC | 3 cut(s) | 400, 518, 583 |
| NciI | CCSGG | 3 cut(s) | 103, 119, 290 |
| NcoI | CCATGG | 1 cut(s) | 438 |
| NdeII | GATC | 4 cut(s) | 283, 378, 772, 871 |
| NlaIII | CATG | 7 cut(s) | 152, 322, 367, 442, 544, 586, 680 |
| NlaIV | GGNNCC | 1 cut(s) | 222 |
| NmuCI | GTSAC | 1 cut(s) | 532 |
| NsbI | TGCGCA | 1 cut(s) | 522 |
| PaeR7I | CTCGAG | 1 cut(s) | 776 |
| PagI | TCATGA | 1 cut(s) | 148 |
| PciSI | GCTCTTC | 1 cut(s) | 843 |
| PcsI | WCGNNNNNNNCGW | 1 cut(s) | 832 |
| PctI | GAATGC | 1 cut(s) | 533 |
| PfeI | GAWTC | 1 cut(s) | 965 |
| PfoI | TCCNGGA | 2 cut(s) | 117, 288 |
| PinAI | ACCGGT | 1 cut(s) | 407 |
| PkrI | GCNGC | 1 cut(s) | 815 |
| PleI | GAGTC | 4 cut(s) | 153, 650, 890, 947 |
| PpsI | GAGTC | 4 cut(s) | 153, 650, 890, 947 |
| PshBI | ATTAAT | 1 cut(s) | 933 |
| PspFI | CCCAGC | 1 cut(s) | 816 |
| PspN4I | GGNNCC | 1 cut(s) | 222 |
| PspPI | GGNCC | 1 cut(s) | 410 |
| RsaI | GTAC | 4 cut(s) | 134, 417, 597, 782 |
| RsaNI | GTAC | 4 cut(s) | 133, 416, 596, 781 |
| RseI | CAYNNNNRTG | 2 cut(s) | 428, 539 |
| SapI | GCTCTTC | 1 cut(s) | 843 |
| SaqAI | TTAA | 2 cut(s) | 711, 933 |
| SatI | GCNGC | 1 cut(s) | 814 |
| Sau3AI | GATC | 4 cut(s) | 283, 378, 772, 871 |
| Sau96I | GGNCC | 1 cut(s) | 410 |
| SchI | GAGTC | 4 cut(s) | 154, 650, 890, 947 |
| ScrFI | CCNGG | 3 cut(s) | 103, 119, 290 |
| Sfr274I | CTCGAG | 1 cut(s) | 776 |
| SinI | GGWCC | 1 cut(s) | 410 |
| SlaI | CTCGAG | 1 cut(s) | 776 |
| SmiMI | CAYNNNNRTG | 2 cut(s) | 428, 539 |
| SmlI | CTYRAG | 2 cut(s) | 6, 776 |
| SmoI | CTYRAG | 2 cut(s) | 6, 776 |
| Sse9I | AATT | 8 cut(s) | 45, 326, 349, 395, 645, 837, 930, 934 |
| SsiI | CCGC | 4 cut(s) | 486, 575, 813, 821 |
| SspMI | CTAG | 1 cut(s) | 683 |
| StyD4I | CCNGG | 3 cut(s) | 101, 117, 288 |
| StyI | CCWWGG | 1 cut(s) | 438 |
| TaaI | ACNGT | 4 cut(s) | 22, 155, 198, 716 |
| TaiI | ACGT | 1 cut(s) | 175 |
| TaqI | TCGA | 2 cut(s) | 193, 777 |
| TasI | AATT | 8 cut(s) | 45, 326, 349, 395, 645, 837, 930, 934 |
| TatI | WGTACW | 1 cut(s) | 415 |
| TauI | GCSGC | 1 cut(s) | 816 |
| TfiI | GAWTC | 1 cut(s) | 965 |
| Tru1I | TTAA | 2 cut(s) | 711, 933 |
| Tru9I | TTAA | 2 cut(s) | 711, 933 |
| TscAI | CASTG | 2 cut(s) | 631, 701 |
| TseFI | GTSAC | 1 cut(s) | 532 |
| Tsp45I | GTSAC | 1 cut(s) | 532 |
| TspDTI | ATGAA | 3 cut(s) | 178, 557, 861 |
| TspRI | CASTG | 2 cut(s) | 631, 701 |
| VpaK11BI | GGWCC | 1 cut(s) | 410 |
| VspI | ATTAAT | 1 cut(s) | 933 |
| XapI | RAATTY | 4 cut(s) | 326, 349, 645, 837 |
| XhoI | CTCGAG | 1 cut(s) | 776 |
| XspI | CTAG | 1 cut(s) | 683 |