Transcription factor
| Domain Name | Pfam ID | Position | E-value | Description |
|---|---|---|---|---|
| Transposase_21 | PF02992 | 2 - 74 | 9.9e-13 | Transposase family tnp2 |
Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.
| Enzyme | Recognition Site | Cut Count | Positions (bp) |
|---|---|---|---|
| AccB7I | CCANNNNNTGG | 1 cut(s) | 189 |
| AccII | CGCG | 1 cut(s) | 479 |
| AciI | CCGC | 3 cut(s) | 266, 524, 632 |
| AclI | AACGTT | 1 cut(s) | 15 |
| AclWI | GGATC | 1 cut(s) | 677 |
| AcsI | RAATTY | 3 cut(s) | 204, 296, 648 |
| AcyI | GRCGYC | 1 cut(s) | 753 |
| AfaI | GTAC | 1 cut(s) | 227 |
| AfiI | CCNNNNNNNGG | 2 cut(s) | 189, 469 |
| AflIII | ACRYGT | 4 cut(s) | 288, 305, 444, 477 |
| AjiI | CACGTC | 1 cut(s) | 445 |
| AluBI | AGCT | 1 cut(s) | 241 |
| AluI | AGCT | 1 cut(s) | 241 |
| Alw21I | GWGCWC | 1 cut(s) | 504 |
| Alw44I | GTGCAC | 1 cut(s) | 500 |
| AlwI | GGATC | 1 cut(s) | 677 |
| AoxI | GGCC | 1 cut(s) | 540 |
| ApaLI | GTGCAC | 1 cut(s) | 500 |
| ApeKI | GCWGC | 2 cut(s) | 66, 238 |
| ApoI | RAATTY | 3 cut(s) | 204, 296, 648 |
| AseI | ATTAAT | 1 cut(s) | 744 |
| AspS9I | GGNCC | 1 cut(s) | 159 |
| AsuC2I | CCSGG | 1 cut(s) | 521 |
| AsuHPI | GGTGA | 2 cut(s) | 92, 485 |
| AvaII | GGWCC | 1 cut(s) | 159 |
| BaeGI | GKGCMC | 2 cut(s) | 413, 504 |
| BanII | GRGCYC | 1 cut(s) | 579 |
| BbsI | GAAGAC | 3 cut(s) | 552, 711, 768 |
| Bbv12I | GWGCWC | 1 cut(s) | 504 |
| BbvI | GCAGC | 2 cut(s) | 78, 250 |
| BccI | CCATC | 2 cut(s) | 149, 183 |
| BcgI | CGANNNNNNTGC | 2 cut(s) | 128, 162 |
| BciVI | GTATCC | 1 cut(s) | 20 |
| BclI | TGATCA | 2 cut(s) | 121, 351 |
| BcnI | CCSGG | 1 cut(s) | 521 |
| BfaI | CTAG | 1 cut(s) | 365 |
| BfuI | GTATCC | 1 cut(s) | 20 |
| BisI | GCNGC | 4 cut(s) | 67, 239, 267, 525 |
| BlpI | GCTNAGC | 1 cut(s) | 242 |
| BlsI | GCNGC | 4 cut(s) | 68, 240, 268, 526 |
| Bme1390I | CCNGG | 1 cut(s) | 521 |
| Bme18I | GGWCC | 1 cut(s) | 159 |
| BmgBI | CACGTC | 1 cut(s) | 445 |
| BmgT120I | GGNCC | 1 cut(s) | 159 |
| BmiI | GGNNCC | 1 cut(s) | 160 |
| BmrFI | CCNGG | 1 cut(s) | 521 |
| BmsI | GCATC | 2 cut(s) | 130, 363 |
| BpiI | GAAGAC | 3 cut(s) | 552, 711, 768 |
| BpmI | CTGGAG | 1 cut(s) | 358 |
| Bpu10I | CCTNAGC | 2 cut(s) | 50, 468 |
| Bpu1102I | GCTNAGC | 1 cut(s) | 242 |
| BpuMI | CCSGG | 1 cut(s) | 521 |
| BsaAI | YACGTR | 1 cut(s) | 308 |
| BsaBI | GATNNNNATC | 1 cut(s) | 681 |
| BsaHI | GRCGYC | 1 cut(s) | 753 |
| BsaJI | CCNNGG | 1 cut(s) | 665 |
| BsaXI | ACNNNNNCTCC | 2 cut(s) | 55, 85 |
| Bsc4I | CCNNNNNNNGG | 2 cut(s) | 189, 469 |
| Bse1I | ACTGG | 1 cut(s) | 341 |
| Bse3DI | GCAATG | 1 cut(s) | 73 |
| Bse8I | GATNNNNATC | 1 cut(s) | 681 |
| BseDI | CCNNGG | 1 cut(s) | 665 |
| BseGI | GGATG | 2 cut(s) | 250, 778 |
| BseJI | GATNNNNATC | 1 cut(s) | 681 |
| BseLI | CCNNNNNNNGG | 2 cut(s) | 189, 469 |
| BseMI | GCAATG | 1 cut(s) | 73 |
| BseNI | ACTGG | 1 cut(s) | 341 |
| BseRI | GAGGAG | 1 cut(s) | 592 |
| BseSI | GKGCMC | 2 cut(s) | 413, 504 |
| BseXI | GCAGC | 2 cut(s) | 78, 250 |
| Bsh1236I | CGCG | 1 cut(s) | 479 |
| BshFI | GGCC | 1 cut(s) | 542 |
| BsiHKAI | GWGCWC | 1 cut(s) | 504 |
| BsiSI | CCGG | 1 cut(s) | 520 |
| BslFI | GGGAC | 1 cut(s) | 172 |
| BslI | CCNNNNNNNGG | 2 cut(s) | 189, 469 |
| BsmFI | GGGAC | 1 cut(s) | 172 |
| BsnI | GGCC | 1 cut(s) | 542 |
| Bsp1286I | GDGCHC | 3 cut(s) | 413, 504, 579 |
| Bsp143I | GATC | 3 cut(s) | 121, 351, 682 |
| Bsp1720I | GCTNAGC | 1 cut(s) | 242 |
| BspACI | CCGC | 3 cut(s) | 266, 524, 632 |
| BspANI | GGCC | 1 cut(s) | 542 |
| BspFNI | CGCG | 1 cut(s) | 479 |
| BspLI | GGNNCC | 1 cut(s) | 160 |
| BspPI | GGATC | 1 cut(s) | 677 |
| BspQI | GCTCTTC | 1 cut(s) | 654 |
| BsrDI | GCAATG | 1 cut(s) | 73 |
| BsrI | ACTGG | 1 cut(s) | 341 |
| BssECI | CCNNGG | 1 cut(s) | 665 |
| BssMI | GATC | 3 cut(s) | 121, 351, 682 |
| BssNI | GRCGYC | 1 cut(s) | 753 |
| BssT1I | CCWWGG | 1 cut(s) | 665 |
| Bst4CI | ACNGT | 5 cut(s) | 104, 163, 401, 415, 610 |
| Bst6I | CTCTTC | 1 cut(s) | 654 |
| BstACI | GRCGYC | 1 cut(s) | 753 |
| BstAPI | GCANNNNNTGC | 1 cut(s) | 75 |
| BstBAI | YACGTR | 1 cut(s) | 308 |
| BstDEI | CTNAG | 3 cut(s) | 50, 242, 468 |
| BstEII | GGTNACC | 1 cut(s) | 98 |
| BstENI | CCTNNNNNAGG | 1 cut(s) | 467 |
| BstF5I | GGATG | 2 cut(s) | 250, 778 |
| BstFNI | CGCG | 1 cut(s) | 479 |
| BstKTI | GATC | 3 cut(s) | 124, 354, 685 |
| BstMBI | GATC | 3 cut(s) | 121, 351, 682 |
| BstMWI | GCNNNNNNNGC | 1 cut(s) | 75 |
| BstNSI | RCATGY | 2 cut(s) | 149, 292 |
| BstPI | GGTNACC | 1 cut(s) | 98 |
| BstSCI | CCNGG | 1 cut(s) | 519 |
| BstSLI | GKGCMC | 2 cut(s) | 413, 504 |
| BstUI | CGCG | 1 cut(s) | 479 |
| BstV1I | GCAGC | 2 cut(s) | 78, 250 |
| BstV2I | GAAGAC | 3 cut(s) | 552, 711, 768 |
| BstXI | CCANNNNNNTGG | 1 cut(s) | 262 |
| BsuI | GTATCC | 1 cut(s) | 20 |
| BsuRI | GGCC | 1 cut(s) | 542 |
| BtgZI | GCGATG | 2 cut(s) | 69, 729 |
| BtrI | CACGTC | 1 cut(s) | 445 |
| BtsCI | GGATG | 2 cut(s) | 250, 778 |
| BtsI | GCAGTG | 1 cut(s) | 219 |
| BtsIMutI | CAGTG | 3 cut(s) | 219, 406, 420 |
| Cfr13I | GGNCC | 1 cut(s) | 159 |
| CseI | GACGC | 2 cut(s) | 485, 761 |
| Csp6I | GTAC | 1 cut(s) | 226 |
| CviAII | CATG | 2 cut(s) | 146, 289 |
| CviJI | RGCY | 8 cut(s) | 35, 241, 527, 542, 577, 664, 670, 790 |
| CviKI_1 | RGCY | 8 cut(s) | 35, 241, 527, 542, 577, 664, 670, 790 |
| CviQI | GTAC | 1 cut(s) | 226 |
| DdeI | CTNAG | 3 cut(s) | 50, 242, 468 |
| DpnI | GATC | 3 cut(s) | 123, 353, 684 |
| DpnII | GATC | 3 cut(s) | 121, 351, 682 |
| DraI | TTTAAA | 1 cut(s) | 628 |
| Eam1104I | CTCTTC | 1 cut(s) | 654 |
| EarI | CTCTTC | 1 cut(s) | 654 |
| Eco130I | CCWWGG | 1 cut(s) | 665 |
| Eco24I | GRGCYC | 1 cut(s) | 579 |
| Eco47I | GGWCC | 1 cut(s) | 159 |
| Eco91I | GGTNACC | 1 cut(s) | 98 |
| EcoNI | CCTNNNNNAGG | 1 cut(s) | 467 |
| EcoO65I | GGTNACC | 1 cut(s) | 98 |
| EcoRI | GAATTC | 1 cut(s) | 648 |
| EcoT14I | CCWWGG | 1 cut(s) | 665 |
| EcoT22I | ATGCAT | 1 cut(s) | 151 |
| EcoT38I | GRGCYC | 1 cut(s) | 579 |
| ErhI | CCWWGG | 1 cut(s) | 665 |
| FaeI | CATG | 2 cut(s) | 149, 292 |
| FaqI | GGGAC | 1 cut(s) | 172 |
| FatI | CATG | 2 cut(s) | 145, 288 |
| FauI | CCCGC | 1 cut(s) | 625 |
| FauNDI | CATATG | 1 cut(s) | 118 |
| FbaI | TGATCA | 2 cut(s) | 121, 351 |
| Fnu4HI | GCNGC | 4 cut(s) | 67, 239, 267, 525 |
| FokI | GGATG | 2 cut(s) | 237, 785 |
| FriOI | GRGCYC | 1 cut(s) | 579 |
| Fsp4HI | GCNGC | 4 cut(s) | 67, 239, 267, 525 |
| FspBI | CTAG | 1 cut(s) | 365 |
| GluI | GCNGC | 4 cut(s) | 67, 239, 267, 525 |
| GsuI | CTGGAG | 1 cut(s) | 358 |
| HaeIII | GGCC | 1 cut(s) | 542 |
| HapII | CCGG | 1 cut(s) | 520 |
| HgaI | GACGC | 2 cut(s) | 485, 761 |
| Hin1I | GRCGYC | 1 cut(s) | 753 |
| Hin1II | CATG | 2 cut(s) | 149, 292 |
| HincII | GTYRAC | 1 cut(s) | 493 |
| HindII | GTYRAC | 1 cut(s) | 493 |
| HinfI | GANTC | 3 cut(s) | 707, 764, 776 |
| HpaII | CCGG | 1 cut(s) | 520 |
| HphI | GGTGA | 2 cut(s) | 92, 485 |
| Hpy166II | GTNNAC | 2 cut(s) | 493, 502 |
| Hpy188I | TCNGA | 3 cut(s) | 751, 772, 781 |
| Hpy188III | TCNNGA | 4 cut(s) | 41, 125, 572, 653 |
| Hpy8I | GTNNAC | 2 cut(s) | 493, 502 |
| HpyAV | CCTTC | 1 cut(s) | 122 |
| HpyCH4III | ACNGT | 5 cut(s) | 104, 163, 401, 415, 610 |
| HpyCH4IV | ACGT | 3 cut(s) | 15, 307, 444 |
| HpyCH4V | TGCA | 6 cut(s) | 78, 90, 143, 149, 376, 502 |
| HpyF10VI | GCNNNNNNNGC | 1 cut(s) | 75 |
| HpyF3I | CTNAG | 3 cut(s) | 50, 242, 468 |
| HpySE526I | ACGT | 3 cut(s) | 15, 307, 444 |
| Hsp92I | GRCGYC | 1 cut(s) | 753 |
| Hsp92II | CATG | 2 cut(s) | 149, 292 |
| Ksp22I | TGATCA | 2 cut(s) | 121, 351 |
| Kzo9I | GATC | 3 cut(s) | 121, 351, 682 |
| LguI | GCTCTTC | 1 cut(s) | 654 |
| LmnI | GCTCC | 1 cut(s) | 63 |
| LpnPI | CCDG | 9 cut(s) | 54, 196, 288, 307, 322, 340, 533, 696, 750 |
| Lsp1109I | GCAGC | 2 cut(s) | 78, 250 |
| LweI | GCATC | 2 cut(s) | 130, 363 |
| MaeI | CTAG | 1 cut(s) | 365 |
| MaeII | ACGT | 3 cut(s) | 15, 307, 444 |
| MaeIII | GTNAC | 2 cut(s) | 98, 473 |
| MalI | GATC | 3 cut(s) | 123, 353, 684 |
| MboI | GATC | 3 cut(s) | 121, 351, 682 |
| MboII | GAAGA | 9 cut(s) | 198, 212, 557, 566, 569, 671, 716, 770, 773 |
| MhlI | GDGCHC | 3 cut(s) | 413, 504, 579 |
| MluCI | AATT | 7 cut(s) | 92, 204, 296, 622, 648, 741, 745 |
| MluI | ACGCGT | 1 cut(s) | 477 |
| MlyI | GAGTC | 2 cut(s) | 701, 758 |
| MnlI | CCTC | 8 cut(s) | 52, 189, 421, 516, 532, 544, 613, 712 |
| Mph1103I | ATGCAT | 1 cut(s) | 151 |
| MseI | TTAA | 5 cut(s) | 219, 618, 627, 744, 793 |
| MspI | CCGG | 1 cut(s) | 520 |
| MspR9I | CCNGG | 1 cut(s) | 521 |
| MvnI | CGCG | 1 cut(s) | 479 |
| MwoI | GCNNNNNNNGC | 1 cut(s) | 75 |
| NciI | CCSGG | 1 cut(s) | 521 |
| NdeI | CATATG | 1 cut(s) | 118 |
| NdeII | GATC | 3 cut(s) | 121, 351, 682 |
| NlaIII | CATG | 2 cut(s) | 149, 292 |
| NlaIV | GGNNCC | 1 cut(s) | 160 |
| NmuCI | GTSAC | 2 cut(s) | 98, 473 |
| NsiI | ATGCAT | 1 cut(s) | 151 |
| NspI | RCATGY | 2 cut(s) | 149, 292 |
| PciI | ACATGT | 1 cut(s) | 288 |
| PciSI | GCTCTTC | 1 cut(s) | 654 |
| PfeI | GAWTC | 1 cut(s) | 776 |
| PflMI | CCANNNNNTGG | 1 cut(s) | 189 |
| PkrI | GCNGC | 4 cut(s) | 68, 240, 268, 526 |
| PleI | GAGTC | 2 cut(s) | 701, 758 |
| PpsI | GAGTC | 2 cut(s) | 701, 758 |
| Ppu21I | YACGTR | 1 cut(s) | 308 |
| PscI | ACATGT | 1 cut(s) | 288 |
| PshBI | ATTAAT | 1 cut(s) | 744 |
| Psp1406I | AACGTT | 1 cut(s) | 15 |
| PspEI | GGTNACC | 1 cut(s) | 98 |
| PspN4I | GGNNCC | 1 cut(s) | 160 |
| PspPI | GGNCC | 1 cut(s) | 159 |
| RsaI | GTAC | 1 cut(s) | 227 |
| RsaNI | GTAC | 1 cut(s) | 226 |
| SapI | GCTCTTC | 1 cut(s) | 654 |
| SaqAI | TTAA | 5 cut(s) | 219, 618, 627, 744, 793 |
| SatI | GCNGC | 4 cut(s) | 67, 239, 267, 525 |
| Sau3AI | GATC | 3 cut(s) | 121, 351, 682 |
| Sau96I | GGNCC | 1 cut(s) | 159 |
| SchI | GAGTC | 2 cut(s) | 701, 758 |
| ScrFI | CCNGG | 1 cut(s) | 521 |
| SduI | GDGCHC | 3 cut(s) | 413, 504, 579 |
| SfaNI | GCATC | 2 cut(s) | 130, 363 |
| SinI | GGWCC | 1 cut(s) | 159 |
| Sse9I | AATT | 7 cut(s) | 92, 204, 296, 622, 648, 741, 745 |
| SsiI | CCGC | 3 cut(s) | 266, 524, 632 |
| SspI | AATATT | 1 cut(s) | 259 |
| SspMI | CTAG | 1 cut(s) | 365 |
| StyD4I | CCNGG | 1 cut(s) | 519 |
| StyI | CCWWGG | 1 cut(s) | 665 |
| TaaI | ACNGT | 5 cut(s) | 104, 163, 401, 415, 610 |
| TaiI | ACGT | 3 cut(s) | 18, 310, 447 |
| TaqI | TCGA | 2 cut(s) | 138, 508 |
| TasI | AATT | 7 cut(s) | 92, 204, 296, 622, 648, 741, 745 |
| TauI | GCSGC | 2 cut(s) | 269, 527 |
| TfiI | GAWTC | 1 cut(s) | 776 |
| Tru1I | TTAA | 5 cut(s) | 219, 618, 627, 744, 793 |
| Tru9I | TTAA | 5 cut(s) | 219, 618, 627, 744, 793 |
| TscAI | CASTG | 3 cut(s) | 219, 406, 420 |
| TseFI | GTSAC | 2 cut(s) | 98, 473 |
| TseI | GCWGC | 2 cut(s) | 66, 238 |
| Tsp45I | GTSAC | 2 cut(s) | 98, 473 |
| TspDTI | ATGAA | 1 cut(s) | 672 |
| TspRI | CASTG | 3 cut(s) | 219, 406, 420 |
| Van91I | CCANNNNNTGG | 1 cut(s) | 189 |
| VneI | GTGCAC | 1 cut(s) | 500 |
| VpaK11BI | GGWCC | 1 cut(s) | 159 |
| VspI | ATTAAT | 1 cut(s) | 744 |
| XagI | CCTNNNNNAGG | 1 cut(s) | 467 |
| XapI | RAATTY | 3 cut(s) | 204, 296, 648 |
| XceI | RCATGY | 2 cut(s) | 149, 292 |
| XspI | CTAG | 1 cut(s) | 365 |
| Zsp2I | ATGCAT | 1 cut(s) | 151 |