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| Enzyme | Recognition Site | Cut Count | Positions (bp) |
|---|---|---|---|
| AciI | CCGC | 1 cut(s) | 403 |
| AclWI | GGATC | 3 cut(s) | 70, 83, 230 |
| AcsI | RAATTY | 1 cut(s) | 151 |
| AfaI | GTAC | 1 cut(s) | 398 |
| AgsI | TTSAA | 4 cut(s) | 157, 224, 296, 359 |
| AjnI | CCWGG | 1 cut(s) | 364 |
| AjuI | GAANNNNNNNTTGG | 2 cut(s) | 288, 320 |
| AloI | GAACNNNNNNTCC | 2 cut(s) | 186, 218 |
| AluBI | AGCT | 4 cut(s) | 24, 55, 133, 304 |
| AluI | AGCT | 4 cut(s) | 24, 55, 133, 304 |
| Alw21I | GWGCWC | 1 cut(s) | 57 |
| AlwI | GGATC | 3 cut(s) | 70, 83, 230 |
| ApoI | RAATTY | 1 cut(s) | 151 |
| AsuHPI | GGTGA | 4 cut(s) | 46, 160, 317, 328 |
| BaeI | ACNNNNGTAYC | 2 cut(s) | 171, 204 |
| BamHI | GGATCC | 1 cut(s) | 75 |
| BanII | GRGCYC | 1 cut(s) | 57 |
| Bbv12I | GWGCWC | 1 cut(s) | 57 |
| BccI | CCATC | 4 cut(s) | 336, 341, 358, 425 |
| BciT130I | CCWGG | 1 cut(s) | 366 |
| BfaI | CTAG | 1 cut(s) | 270 |
| BfmI | CTRYAG | 1 cut(s) | 231 |
| Bme1390I | CCNGG | 1 cut(s) | 366 |
| BmiI | GGNNCC | 1 cut(s) | 77 |
| BmrFI | CCNGG | 1 cut(s) | 366 |
| BmsI | GCATC | 1 cut(s) | 336 |
| BsaBI | GATNNNNATC | 1 cut(s) | 80 |
| Bse8I | GATNNNNATC | 1 cut(s) | 80 |
| BseBI | CCWGG | 1 cut(s) | 366 |
| BseGI | GGATG | 1 cut(s) | 328 |
| BseJI | GATNNNNATC | 1 cut(s) | 80 |
| BseRI | GAGGAG | 1 cut(s) | 428 |
| BsiHKAI | GWGCWC | 1 cut(s) | 57 |
| BslFI | GGGAC | 1 cut(s) | 323 |
| BsmFI | GGGAC | 1 cut(s) | 323 |
| Bsp1286I | GDGCHC | 1 cut(s) | 57 |
| Bsp143I | GATC | 2 cut(s) | 75, 235 |
| BspACI | CCGC | 1 cut(s) | 403 |
| BspLI | GGNNCC | 1 cut(s) | 77 |
| BspPI | GGATC | 3 cut(s) | 70, 83, 230 |
| BssMI | GATC | 2 cut(s) | 75, 235 |
| Bst2UI | CCWGG | 1 cut(s) | 366 |
| Bst4CI | ACNGT | 1 cut(s) | 281 |
| BstDEI | CTNAG | 1 cut(s) | 373 |
| BstF5I | GGATG | 1 cut(s) | 328 |
| BstKTI | GATC | 2 cut(s) | 78, 238 |
| BstMBI | GATC | 2 cut(s) | 75, 235 |
| BstNI | CCWGG | 1 cut(s) | 366 |
| BstNSI | RCATGY | 1 cut(s) | 403 |
| BstSCI | CCNGG | 1 cut(s) | 364 |
| BstSFI | CTRYAG | 1 cut(s) | 231 |
| BstX2I | RGATCY | 2 cut(s) | 75, 235 |
| BstYI | RGATCY | 2 cut(s) | 75, 235 |
| BtsCI | GGATG | 1 cut(s) | 328 |
| BtsIMutI | CAGTG | 1 cut(s) | 286 |
| CsiI | ACCWGGT | 1 cut(s) | 364 |
| Csp6I | GTAC | 1 cut(s) | 397 |
| CviAII | CATG | 3 cut(s) | 19, 343, 400 |
| CviJI | RGCY | 4 cut(s) | 24, 55, 133, 304 |
| CviKI_1 | RGCY | 4 cut(s) | 24, 55, 133, 304 |
| CviQI | GTAC | 1 cut(s) | 397 |
| DdeI | CTNAG | 1 cut(s) | 373 |
| DpnI | GATC | 2 cut(s) | 77, 237 |
| DpnII | GATC | 2 cut(s) | 75, 235 |
| DraI | TTTAAA | 1 cut(s) | 174 |
| Ecl136II | GAGCTC | 1 cut(s) | 55 |
| Eco24I | GRGCYC | 1 cut(s) | 57 |
| Eco53kI | GAGCTC | 1 cut(s) | 55 |
| EcoICRI | GAGCTC | 1 cut(s) | 55 |
| EcoRII | CCWGG | 1 cut(s) | 364 |
| EcoT38I | GRGCYC | 1 cut(s) | 57 |
| FaeI | CATG | 3 cut(s) | 22, 346, 403 |
| FaiI | YATR | 7 cut(s) | 20, 30, 49, 63, 344, 401, 422 |
| FalI | AAGNNNNNCTT | 2 cut(s) | 288, 320 |
| FaqI | GGGAC | 1 cut(s) | 323 |
| FatI | CATG | 3 cut(s) | 18, 342, 399 |
| FauI | CCCGC | 1 cut(s) | 396 |
| FokI | GGATG | 1 cut(s) | 315 |
| FriOI | GRGCYC | 1 cut(s) | 57 |
| FspBI | CTAG | 1 cut(s) | 270 |
| Hin1II | CATG | 3 cut(s) | 22, 346, 403 |
| HphI | GGTGA | 4 cut(s) | 46, 160, 317, 328 |
| Hpy166II | GTNNAC | 1 cut(s) | 141 |
| Hpy188III | TCNNGA | 1 cut(s) | 224 |
| Hpy8I | GTNNAC | 1 cut(s) | 141 |
| HpyAV | CCTTC | 3 cut(s) | 105, 115, 401 |
| HpyCH4III | ACNGT | 1 cut(s) | 281 |
| HpyF3I | CTNAG | 1 cut(s) | 373 |
| Hsp92II | CATG | 3 cut(s) | 22, 346, 403 |
| Kzo9I | GATC | 2 cut(s) | 75, 235 |
| LmnI | GCTCC | 1 cut(s) | 52 |
| LpnPI | CCDG | 3 cut(s) | 243, 351, 378 |
| LweI | GCATC | 1 cut(s) | 336 |
| MabI | ACCWGGT | 1 cut(s) | 364 |
| MaeI | CTAG | 1 cut(s) | 270 |
| MaeIII | GTNAC | 1 cut(s) | 368 |
| MalI | GATC | 2 cut(s) | 77, 237 |
| MboI | GATC | 2 cut(s) | 75, 235 |
| MboII | GAAGA | 2 cut(s) | 308, 398 |
| MflI | RGATCY | 2 cut(s) | 75, 235 |
| MhlI | GDGCHC | 1 cut(s) | 57 |
| MluCI | AATT | 5 cut(s) | 6, 151, 196, 261, 359 |
| MnlI | CCTC | 4 cut(s) | 283, 376, 406, 409 |
| MseI | TTAA | 2 cut(s) | 87, 173 |
| MslI | CAYNNNNRTG | 3 cut(s) | 174, 341, 344 |
| MspR9I | CCNGG | 1 cut(s) | 366 |
| MvaI | CCWGG | 1 cut(s) | 366 |
| NdeII | GATC | 2 cut(s) | 75, 235 |
| NlaIII | CATG | 3 cut(s) | 22, 346, 403 |
| NlaIV | GGNNCC | 1 cut(s) | 77 |
| NspI | RCATGY | 1 cut(s) | 403 |
| Psp124BI | GAGCTC | 1 cut(s) | 57 |
| Psp6I | CCWGG | 1 cut(s) | 364 |
| PspGI | CCWGG | 1 cut(s) | 364 |
| PspN4I | GGNNCC | 1 cut(s) | 77 |
| PsuI | RGATCY | 2 cut(s) | 75, 235 |
| RsaI | GTAC | 1 cut(s) | 398 |
| RsaNI | GTAC | 1 cut(s) | 397 |
| RseI | CAYNNNNRTG | 3 cut(s) | 174, 341, 344 |
| SacI | GAGCTC | 1 cut(s) | 57 |
| SaqAI | TTAA | 2 cut(s) | 87, 173 |
| Sau3AI | GATC | 2 cut(s) | 75, 235 |
| ScrFI | CCNGG | 1 cut(s) | 366 |
| SduI | GDGCHC | 1 cut(s) | 57 |
| SetI | ASST | 8 cut(s) | 26, 57, 126, 135, 169, 294, 306, 367 |
| SexAI | ACCWGGT | 1 cut(s) | 364 |
| SfaNI | GCATC | 1 cut(s) | 336 |
| SfcI | CTRYAG | 1 cut(s) | 231 |
| SmiI | ATTTAAAT | 1 cut(s) | 174 |
| SmiMI | CAYNNNNRTG | 3 cut(s) | 174, 341, 344 |
| Sse9I | AATT | 5 cut(s) | 6, 151, 196, 261, 359 |
| SsiI | CCGC | 1 cut(s) | 403 |
| SspMI | CTAG | 1 cut(s) | 270 |
| SstI | GAGCTC | 1 cut(s) | 57 |
| StyD4I | CCNGG | 1 cut(s) | 364 |
| SwaI | ATTTAAAT | 1 cut(s) | 174 |
| TaaI | ACNGT | 1 cut(s) | 281 |
| TaqI | TCGA | 1 cut(s) | 57 |
| TasI | AATT | 5 cut(s) | 6, 151, 196, 261, 359 |
| Tru1I | TTAA | 2 cut(s) | 87, 173 |
| Tru9I | TTAA | 2 cut(s) | 87, 173 |
| TscAI | CASTG | 1 cut(s) | 286 |
| TspDTI | ATGAA | 1 cut(s) | 78 |
| TspRI | CASTG | 1 cut(s) | 286 |
| XapI | RAATTY | 1 cut(s) | 151 |
| XceI | RCATGY | 1 cut(s) | 403 |
| XspI | CTAG | 1 cut(s) | 270 |