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| Enzyme | Recognition Site | Cut Count | Positions (bp) |
|---|---|---|---|
| AanI | TTATAA | 1 cut(s) | 249 |
| AclWI | GGATC | 2 cut(s) | 68, 782 |
| AcuI | CTGAAG | 1 cut(s) | 651 |
| AfaI | GTAC | 3 cut(s) | 127, 226, 413 |
| AfiI | CCNNNNNNNGG | 1 cut(s) | 635 |
| AgsI | TTSAA | 7 cut(s) | 219, 290, 387, 511, 785, 817, 881 |
| AjnI | CCWGG | 2 cut(s) | 121, 367 |
| AloI | GAACNNNNNNTCC | 2 cut(s) | 192, 224 |
| AluBI | AGCT | 3 cut(s) | 240, 293, 731 |
| AluI | AGCT | 3 cut(s) | 240, 293, 731 |
| Alw21I | GWGCWC | 1 cut(s) | 242 |
| Alw26I | GTCTC | 2 cut(s) | 261, 668 |
| AlwI | GGATC | 2 cut(s) | 68, 782 |
| AoxI | GGCC | 1 cut(s) | 437 |
| ApeKI | GCWGC | 1 cut(s) | 293 |
| AseI | ATTAAT | 1 cut(s) | 171 |
| Asp700I | GAANNNNTTC | 1 cut(s) | 207 |
| AsuHPI | GGTGA | 1 cut(s) | 6 |
| BanII | GRGCYC | 1 cut(s) | 242 |
| BbsI | GAAGAC | 2 cut(s) | 261, 668 |
| Bbv12I | GWGCWC | 1 cut(s) | 242 |
| BbvI | GCAGC | 1 cut(s) | 280 |
| BccI | CCATC | 2 cut(s) | 277, 642 |
| BciT130I | CCWGG | 2 cut(s) | 123, 369 |
| BcoDI | GTCTC | 2 cut(s) | 261, 668 |
| BfaI | CTAG | 1 cut(s) | 645 |
| BfmI | CTRYAG | 1 cut(s) | 276 |
| BisI | GCNGC | 1 cut(s) | 294 |
| BlsI | GCNGC | 1 cut(s) | 295 |
| Bme1390I | CCNGG | 2 cut(s) | 123, 369 |
| BmrFI | CCNGG | 2 cut(s) | 123, 369 |
| BmsI | GCATC | 2 cut(s) | 337, 604 |
| BpiI | GAAGAC | 2 cut(s) | 261, 668 |
| BpuEI | CTTGAG | 1 cut(s) | 711 |
| BsaAI | YACGTR | 1 cut(s) | 757 |
| BsaJI | CCNNGG | 1 cut(s) | 367 |
| BsaXI | ACNNNNNCTCC | 2 cut(s) | 192, 222 |
| Bsc4I | CCNNNNNNNGG | 1 cut(s) | 635 |
| BseBI | CCWGG | 2 cut(s) | 123, 369 |
| BseDI | CCNNGG | 1 cut(s) | 367 |
| BseGI | GGATG | 1 cut(s) | 619 |
| BseLI | CCNNNNNNNGG | 1 cut(s) | 635 |
| BseMII | CTCAG | 3 cut(s) | 9, 342, 468 |
| BseRI | GAGGAG | 1 cut(s) | 491 |
| BseXI | GCAGC | 1 cut(s) | 280 |
| BsgI | GTGCAG | 1 cut(s) | 279 |
| BshFI | GGCC | 1 cut(s) | 439 |
| BsiHKAI | GWGCWC | 1 cut(s) | 242 |
| BslFI | GGGAC | 1 cut(s) | 612 |
| BslI | CCNNNNNNNGG | 1 cut(s) | 635 |
| BsmAI | GTCTC | 2 cut(s) | 261, 668 |
| BsmFI | GGGAC | 1 cut(s) | 612 |
| BsmI | GAATGC | 1 cut(s) | 588 |
| BsnI | GGCC | 1 cut(s) | 439 |
| Bsp1286I | GDGCHC | 1 cut(s) | 242 |
| Bsp1407I | TGTACA | 1 cut(s) | 411 |
| Bsp143I | GATC | 5 cut(s) | 11, 73, 145, 787, 871 |
| BspANI | GGCC | 1 cut(s) | 439 |
| BspCNI | CTCAG | 3 cut(s) | 10, 343, 467 |
| BspHI | TCATGA | 1 cut(s) | 768 |
| BspPI | GGATC | 2 cut(s) | 68, 782 |
| BspQI | GCTCTTC | 1 cut(s) | 230 |
| BsrGI | TGTACA | 1 cut(s) | 411 |
| BssECI | CCNNGG | 1 cut(s) | 367 |
| BssMI | GATC | 5 cut(s) | 11, 73, 145, 787, 871 |
| Bst2UI | CCWGG | 2 cut(s) | 123, 369 |
| Bst4CI | ACNGT | 1 cut(s) | 277 |
| Bst6I | CTCTTC | 2 cut(s) | 230, 834 |
| BstAUI | TGTACA | 1 cut(s) | 411 |
| BstBAI | YACGTR | 1 cut(s) | 757 |
| BstDEI | CTNAG | 5 cut(s) | 18, 46, 351, 454, 550 |
| BstF5I | GGATG | 1 cut(s) | 619 |
| BstKTI | GATC | 5 cut(s) | 14, 76, 148, 790, 874 |
| BstMAI | GTCTC | 2 cut(s) | 261, 668 |
| BstMBI | GATC | 5 cut(s) | 11, 73, 145, 787, 871 |
| BstNI | CCWGG | 2 cut(s) | 123, 369 |
| BstNSI | RCATGY | 3 cut(s) | 572, 576, 627 |
| BstSCI | CCNGG | 2 cut(s) | 121, 367 |
| BstSFI | CTRYAG | 1 cut(s) | 276 |
| BstSNI | TACGTA | 1 cut(s) | 757 |
| BstV1I | GCAGC | 1 cut(s) | 280 |
| BstV2I | GAAGAC | 2 cut(s) | 261, 668 |
| BstX2I | RGATCY | 1 cut(s) | 787 |
| BstYI | RGATCY | 1 cut(s) | 787 |
| BsuRI | GGCC | 1 cut(s) | 439 |
| BtsCI | GGATG | 1 cut(s) | 619 |
| CciI | TCATGA | 1 cut(s) | 768 |
| CsiI | ACCWGGT | 1 cut(s) | 121 |
| Csp6I | GTAC | 3 cut(s) | 126, 225, 412 |
| CviAII | CATG | 8 cut(s) | 65, 197, 299, 418, 569, 573, 624, 769 |
| CviJI | RGCY | 8 cut(s) | 240, 293, 439, 491, 549, 701, 731, 869 |
| CviKI_1 | RGCY | 8 cut(s) | 240, 293, 439, 491, 549, 701, 731, 869 |
| CviQI | GTAC | 3 cut(s) | 126, 225, 412 |
| DdeI | CTNAG | 5 cut(s) | 18, 46, 351, 454, 550 |
| DpnI | GATC | 5 cut(s) | 13, 75, 147, 789, 873 |
| DpnII | GATC | 5 cut(s) | 11, 73, 145, 787, 871 |
| Eam1104I | CTCTTC | 2 cut(s) | 230, 834 |
| EarI | CTCTTC | 2 cut(s) | 230, 834 |
| Ecl136II | GAGCTC | 1 cut(s) | 240 |
| Eco105I | TACGTA | 1 cut(s) | 757 |
| Eco24I | GRGCYC | 1 cut(s) | 242 |
| Eco53kI | GAGCTC | 1 cut(s) | 240 |
| Eco57I | CTGAAG | 1 cut(s) | 651 |
| EcoICRI | GAGCTC | 1 cut(s) | 240 |
| EcoRII | CCWGG | 2 cut(s) | 121, 367 |
| EcoT22I | ATGCAT | 1 cut(s) | 574 |
| EcoT38I | GRGCYC | 1 cut(s) | 242 |
| FaeI | CATG | 8 cut(s) | 68, 200, 302, 421, 572, 576, 627, 772 |
| FaqI | GGGAC | 1 cut(s) | 612 |
| FatI | CATG | 8 cut(s) | 64, 196, 298, 417, 568, 572, 623, 768 |
| Fnu4HI | GCNGC | 1 cut(s) | 294 |
| FokI | GGATG | 1 cut(s) | 626 |
| FriOI | GRGCYC | 1 cut(s) | 242 |
| Fsp4HI | GCNGC | 1 cut(s) | 294 |
| FspBI | CTAG | 1 cut(s) | 645 |
| GluI | GCNGC | 1 cut(s) | 294 |
| HaeIII | GGCC | 1 cut(s) | 439 |
| Hin1II | CATG | 8 cut(s) | 68, 200, 302, 421, 572, 576, 627, 772 |
| HinfI | GANTC | 2 cut(s) | 85, 706 |
| HphI | GGTGA | 1 cut(s) | 6 |
| Hpy188I | TCNGA | 2 cut(s) | 457, 670 |
| Hpy188III | TCNNGA | 4 cut(s) | 320, 645, 769, 836 |
| HpyAV | CCTTC | 1 cut(s) | 646 |
| HpyCH4III | ACNGT | 1 cut(s) | 277 |
| HpyCH4IV | ACGT | 1 cut(s) | 756 |
| HpyCH4V | TGCA | 8 cut(s) | 159, 296, 542, 572, 588, 617, 623, 713 |
| HpyF3I | CTNAG | 5 cut(s) | 18, 46, 351, 454, 550 |
| HpySE526I | ACGT | 1 cut(s) | 756 |
| Hsp92II | CATG | 8 cut(s) | 68, 200, 302, 421, 572, 576, 627, 772 |
| Kzo9I | GATC | 5 cut(s) | 11, 73, 145, 787, 871 |
| LguI | GCTCTTC | 1 cut(s) | 230 |
| LmnI | GCTCC | 1 cut(s) | 245 |
| Lsp1109I | GCAGC | 1 cut(s) | 280 |
| LweI | GCATC | 2 cut(s) | 337, 604 |
| MabI | ACCWGGT | 1 cut(s) | 121 |
| MaeI | CTAG | 1 cut(s) | 645 |
| MaeII | ACGT | 1 cut(s) | 756 |
| MaeIII | GTNAC | 3 cut(s) | 336, 480, 827 |
| MalI | GATC | 5 cut(s) | 13, 75, 147, 789, 873 |
| MboI | GATC | 5 cut(s) | 11, 73, 145, 787, 871 |
| MfeI | CAATTG | 1 cut(s) | 618 |
| MflI | RGATCY | 1 cut(s) | 787 |
| MhlI | GDGCHC | 1 cut(s) | 242 |
| MluCI | AATT | 3 cut(s) | 129, 244, 618 |
| MmeI | TCCRAC | 1 cut(s) | 815 |
| MnlI | CCTC | 4 cut(s) | 19, 295, 469, 756 |
| Mph1103I | ATGCAT | 1 cut(s) | 574 |
| MroXI | GAANNNNTTC | 1 cut(s) | 207 |
| MseI | TTAA | 6 cut(s) | 117, 171, 464, 657, 680, 800 |
| MslI | CAYNNNNRTG | 1 cut(s) | 69 |
| MspR9I | CCNGG | 2 cut(s) | 123, 369 |
| MunI | CAATTG | 1 cut(s) | 618 |
| Mva1269I | GAATGC | 1 cut(s) | 588 |
| MvaI | CCWGG | 2 cut(s) | 123, 369 |
| NdeII | GATC | 5 cut(s) | 11, 73, 145, 787, 871 |
| NlaIII | CATG | 8 cut(s) | 68, 200, 302, 421, 572, 576, 627, 772 |
| NsiI | ATGCAT | 1 cut(s) | 574 |
| NspI | RCATGY | 3 cut(s) | 572, 576, 627 |
| PagI | TCATGA | 1 cut(s) | 768 |
| PciSI | GCTCTTC | 1 cut(s) | 230 |
| PctI | GAATGC | 1 cut(s) | 588 |
| PdmI | GAANNNNTTC | 1 cut(s) | 207 |
| PfeI | GAWTC | 2 cut(s) | 85, 706 |
| PkrI | GCNGC | 1 cut(s) | 295 |
| Ppu21I | YACGTR | 1 cut(s) | 757 |
| PshBI | ATTAAT | 1 cut(s) | 171 |
| PsiI | TTATAA | 1 cut(s) | 249 |
| Psp124BI | GAGCTC | 1 cut(s) | 242 |
| Psp6I | CCWGG | 2 cut(s) | 121, 367 |
| PspGI | CCWGG | 2 cut(s) | 121, 367 |
| PsrI | GAACNNNNNNTAC | 2 cut(s) | 270, 302 |
| PsuI | RGATCY | 1 cut(s) | 787 |
| RsaI | GTAC | 3 cut(s) | 127, 226, 413 |
| RsaNI | GTAC | 3 cut(s) | 126, 225, 412 |
| RseI | CAYNNNNRTG | 1 cut(s) | 69 |
| SacI | GAGCTC | 1 cut(s) | 242 |
| SapI | GCTCTTC | 1 cut(s) | 230 |
| SaqAI | TTAA | 6 cut(s) | 117, 171, 464, 657, 680, 800 |
| SatI | GCNGC | 1 cut(s) | 294 |
| Sau3AI | GATC | 5 cut(s) | 11, 73, 145, 787, 871 |
| ScrFI | CCNGG | 2 cut(s) | 123, 369 |
| SduI | GDGCHC | 1 cut(s) | 242 |
| SexAI | ACCWGGT | 1 cut(s) | 121 |
| SfaNI | GCATC | 2 cut(s) | 337, 604 |
| SfcI | CTRYAG | 1 cut(s) | 276 |
| SmiMI | CAYNNNNRTG | 1 cut(s) | 69 |
| SmlI | CTYRAG | 1 cut(s) | 726 |
| SmoI | CTYRAG | 1 cut(s) | 726 |
| SnaBI | TACGTA | 1 cut(s) | 757 |
| Sse9I | AATT | 3 cut(s) | 129, 244, 618 |
| SspMI | CTAG | 1 cut(s) | 645 |
| SstI | GAGCTC | 1 cut(s) | 242 |
| StyD4I | CCNGG | 2 cut(s) | 121, 367 |
| TaaI | ACNGT | 1 cut(s) | 277 |
| TaiI | ACGT | 1 cut(s) | 759 |
| TaqI | TCGA | 1 cut(s) | 856 |
| TasI | AATT | 3 cut(s) | 129, 244, 618 |
| TatI | WGTACW | 2 cut(s) | 224, 411 |
| TfiI | GAWTC | 2 cut(s) | 85, 706 |
| Tru1I | TTAA | 6 cut(s) | 117, 171, 464, 657, 680, 800 |
| Tru9I | TTAA | 6 cut(s) | 117, 171, 464, 657, 680, 800 |
| TseI | GCWGC | 1 cut(s) | 293 |
| TspDTI | ATGAA | 5 cut(s) | 434, 513, 534, 757, 785 |
| TspGWI | ACGGA | 2 cut(s) | 84, 626 |
| VspI | ATTAAT | 1 cut(s) | 171 |
| XbaI | TCTAGA | 1 cut(s) | 644 |
| XceI | RCATGY | 3 cut(s) | 572, 576, 627 |
| XmnI | GAANNNNTTC | 1 cut(s) | 207 |
| XspI | CTAG | 1 cut(s) | 645 |
| Zsp2I | ATGCAT | 1 cut(s) | 574 |