Transposase-associated domain
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| Enzyme | Recognition Site | Cut Count | Positions (bp) |
|---|---|---|---|
| AcoI | YGGCCR | 3 cut(s) | 384, 388, 440 |
| AcsI | RAATTY | 1 cut(s) | 183 |
| AfaI | GTAC | 1 cut(s) | 380 |
| AfiI | CCNNNNNNNGG | 1 cut(s) | 296 |
| AgsI | TTSAA | 3 cut(s) | 51, 92, 328 |
| AjuI | GAANNNNNNNTTGG | 2 cut(s) | 7, 39 |
| AleI | CACNNNNGTG | 1 cut(s) | 26 |
| AluBI | AGCT | 2 cut(s) | 80, 219 |
| AluI | AGCT | 2 cut(s) | 80, 219 |
| Alw21I | GWGCWC | 1 cut(s) | 13 |
| AoxI | GGCC | 6 cut(s) | 30, 299, 342, 384, 388, 440 |
| ApeKI | GCWGC | 1 cut(s) | 314 |
| ApoI | RAATTY | 1 cut(s) | 183 |
| AspS9I | GGNCC | 2 cut(s) | 299, 343 |
| AsuHPI | GGTGA | 2 cut(s) | 167, 179 |
| BalI | TGGCCA | 1 cut(s) | 442 |
| BarI | GAAGNNNNNNTAC | 2 cut(s) | 84, 116 |
| BbsI | GAAGAC | 1 cut(s) | 276 |
| Bbv12I | GWGCWC | 1 cut(s) | 13 |
| BbvI | GCAGC | 1 cut(s) | 301 |
| BfmI | CTRYAG | 2 cut(s) | 81, 101 |
| BisI | GCNGC | 1 cut(s) | 315 |
| BlsI | GCNGC | 1 cut(s) | 316 |
| BmgT120I | GGNCC | 2 cut(s) | 299, 343 |
| BmsI | GCATC | 2 cut(s) | 220, 231 |
| BpiI | GAAGAC | 1 cut(s) | 276 |
| BpuEI | CTTGAG | 1 cut(s) | 440 |
| BsaBI | GATNNNNATC | 1 cut(s) | 66 |
| BsaJI | CCNNGG | 1 cut(s) | 27 |
| Bsc4I | CCNNNNNNNGG | 1 cut(s) | 296 |
| Bse118I | RCCGGY | 1 cut(s) | 386 |
| Bse8I | GATNNNNATC | 1 cut(s) | 66 |
| BseDI | CCNNGG | 1 cut(s) | 27 |
| BseGI | GGATG | 2 cut(s) | 124, 246 |
| BseJI | GATNNNNATC | 1 cut(s) | 66 |
| BseLI | CCNNNNNNNGG | 1 cut(s) | 296 |
| BseRI | GAGGAG | 3 cut(s) | 279, 353, 437 |
| BseXI | GCAGC | 1 cut(s) | 301 |
| BshFI | GGCC | 6 cut(s) | 32, 301, 344, 386, 390, 442 |
| BsiHKAI | GWGCWC | 1 cut(s) | 13 |
| BsiSI | CCGG | 1 cut(s) | 387 |
| BslFI | GGGAC | 1 cut(s) | 158 |
| BslI | CCNNNNNNNGG | 1 cut(s) | 296 |
| BsmFI | GGGAC | 1 cut(s) | 158 |
| BsnI | GGCC | 6 cut(s) | 32, 301, 344, 386, 390, 442 |
| Bsp1286I | GDGCHC | 1 cut(s) | 13 |
| Bsp1407I | TGTACA | 1 cut(s) | 378 |
| Bsp143I | GATC | 2 cut(s) | 74, 94 |
| BspANI | GGCC | 6 cut(s) | 32, 301, 344, 386, 390, 442 |
| BsrFI | RCCGGY | 1 cut(s) | 386 |
| BsrGI | TGTACA | 1 cut(s) | 378 |
| BssAI | RCCGGY | 1 cut(s) | 386 |
| BssECI | CCNNGG | 1 cut(s) | 27 |
| BssMI | GATC | 2 cut(s) | 74, 94 |
| Bst4CI | ACNGT | 2 cut(s) | 163, 282 |
| Bst6I | CTCTTC | 1 cut(s) | 40 |
| BstAUI | TGTACA | 1 cut(s) | 378 |
| BstC8I | GCNNGC | 1 cut(s) | 388 |
| BstDSI | CCRYGG | 1 cut(s) | 27 |
| BstENI | CCTNNNNNAGG | 1 cut(s) | 294 |
| BstF5I | GGATG | 2 cut(s) | 124, 246 |
| BstKTI | GATC | 2 cut(s) | 77, 97 |
| BstMBI | GATC | 2 cut(s) | 74, 94 |
| BstSFI | CTRYAG | 2 cut(s) | 81, 101 |
| BstV1I | GCAGC | 1 cut(s) | 301 |
| BstV2I | GAAGAC | 1 cut(s) | 276 |
| BstXI | CCANNNNNNTGG | 1 cut(s) | 223 |
| BsuRI | GGCC | 6 cut(s) | 32, 301, 344, 386, 390, 442 |
| BtgI | CCRYGG | 1 cut(s) | 27 |
| BtsCI | GGATG | 2 cut(s) | 124, 246 |
| BtsIMutI | CAGTG | 1 cut(s) | 168 |
| Cac8I | GCNNGC | 1 cut(s) | 388 |
| Cfr10I | RCCGGY | 1 cut(s) | 386 |
| Cfr13I | GGNCC | 2 cut(s) | 299, 343 |
| Csp6I | GTAC | 1 cut(s) | 379 |
| CspCI | CAANNNNNGTGG | 4 cut(s) | 357, 392, 393, 428 |
| CviAII | CATG | 3 cut(s) | 152, 245, 382 |
| CviQI | GTAC | 1 cut(s) | 379 |
| DpnI | GATC | 2 cut(s) | 76, 96 |
| DpnII | GATC | 2 cut(s) | 74, 94 |
| EaeI | YGGCCR | 3 cut(s) | 384, 388, 440 |
| Eam1104I | CTCTTC | 1 cut(s) | 40 |
| EarI | CTCTTC | 1 cut(s) | 40 |
| EcoNI | CCTNNNNNAGG | 1 cut(s) | 294 |
| EcoT22I | ATGCAT | 1 cut(s) | 246 |
| FaeI | CATG | 3 cut(s) | 155, 248, 385 |
| FalI | AAGNNNNNCTT | 2 cut(s) | 7, 39 |
| FaqI | GGGAC | 1 cut(s) | 158 |
| FatI | CATG | 3 cut(s) | 151, 244, 381 |
| FauNDI | CATATG | 1 cut(s) | 192 |
| Fnu4HI | GCNGC | 1 cut(s) | 315 |
| FokI | GGATG | 2 cut(s) | 131, 253 |
| FseI | GGCCGGCC | 1 cut(s) | 390 |
| Fsp4HI | GCNGC | 1 cut(s) | 315 |
| GluI | GCNGC | 1 cut(s) | 315 |
| HaeIII | GGCC | 6 cut(s) | 32, 301, 344, 386, 390, 442 |
| HapII | CCGG | 1 cut(s) | 387 |
| Hin1II | CATG | 3 cut(s) | 155, 248, 385 |
| HinfI | GANTC | 1 cut(s) | 138 |
| HpaII | CCGG | 1 cut(s) | 387 |
| HphI | GGTGA | 2 cut(s) | 167, 179 |
| Hpy188I | TCNGA | 2 cut(s) | 72, 201 |
| Hpy188III | TCNNGA | 1 cut(s) | 419 |
| HpyCH4III | ACNGT | 2 cut(s) | 163, 282 |
| HpyCH4V | TGCA | 2 cut(s) | 4, 244 |
| Hsp92II | CATG | 3 cut(s) | 155, 248, 385 |
| KroI | GCCGGC | 1 cut(s) | 386 |
| KroNI | GCCGGC | 1 cut(s) | 388 |
| Kzo9I | GATC | 2 cut(s) | 74, 94 |
| LpnPI | CCDG | 5 cut(s) | 127, 229, 276, 400, 418 |
| Lsp1109I | GCAGC | 1 cut(s) | 301 |
| LweI | GCATC | 2 cut(s) | 220, 231 |
| MaeIII | GTNAC | 1 cut(s) | 172 |
| MalI | GATC | 2 cut(s) | 76, 96 |
| MboI | GATC | 2 cut(s) | 74, 94 |
| MboII | GAAGA | 5 cut(s) | 27, 30, 104, 276, 316 |
| MhlI | GDGCHC | 1 cut(s) | 13 |
| MlsI | TGGCCA | 1 cut(s) | 442 |
| MluCI | AATT | 3 cut(s) | 183, 353, 371 |
| MluNI | TGGCCA | 1 cut(s) | 442 |
| MnlI | CCTC | 7 cut(s) | 29, 43, 199, 300, 331, 334, 415 |
| Mox20I | TGGCCA | 1 cut(s) | 442 |
| Mph1103I | ATGCAT | 1 cut(s) | 246 |
| MroNI | GCCGGC | 1 cut(s) | 386 |
| MscI | TGGCCA | 1 cut(s) | 442 |
| MslI | CAYNNNNRTG | 1 cut(s) | 26 |
| Msp20I | TGGCCA | 1 cut(s) | 442 |
| MspI | CCGG | 1 cut(s) | 387 |
| NaeI | GCCGGC | 1 cut(s) | 388 |
| NdeI | CATATG | 1 cut(s) | 192 |
| NdeII | GATC | 2 cut(s) | 74, 94 |
| NgoMIV | GCCGGC | 1 cut(s) | 386 |
| NlaIII | CATG | 3 cut(s) | 155, 248, 385 |
| NsiI | ATGCAT | 1 cut(s) | 246 |
| OliI | CACNNNNGTG | 1 cut(s) | 26 |
| PdiI | GCCGGC | 1 cut(s) | 388 |
| PfeI | GAWTC | 1 cut(s) | 138 |
| PkrI | GCNGC | 1 cut(s) | 316 |
| PspPI | GGNCC | 2 cut(s) | 299, 343 |
| RigI | GGCCGGCC | 1 cut(s) | 390 |
| RsaI | GTAC | 1 cut(s) | 380 |
| RsaNI | GTAC | 1 cut(s) | 379 |
| RseI | CAYNNNNRTG | 1 cut(s) | 26 |
| SatI | GCNGC | 1 cut(s) | 315 |
| Sau3AI | GATC | 2 cut(s) | 74, 94 |
| Sau96I | GGNCC | 2 cut(s) | 299, 343 |
| SduI | GDGCHC | 1 cut(s) | 13 |
| SetI | ASST | 5 cut(s) | 57, 82, 221, 265, 437 |
| SfaNI | GCATC | 2 cut(s) | 220, 231 |
| SfcI | CTRYAG | 2 cut(s) | 81, 101 |
| SmiMI | CAYNNNNRTG | 1 cut(s) | 26 |
| SmlI | CTYRAG | 1 cut(s) | 419 |
| SmoI | CTYRAG | 1 cut(s) | 419 |
| Sse9I | AATT | 3 cut(s) | 183, 353, 371 |
| TaaI | ACNGT | 2 cut(s) | 163, 282 |
| TaqI | TCGA | 1 cut(s) | 336 |
| TasI | AATT | 3 cut(s) | 183, 353, 371 |
| TatI | WGTACW | 1 cut(s) | 378 |
| TfiI | GAWTC | 1 cut(s) | 138 |
| TscAI | CASTG | 1 cut(s) | 168 |
| TseI | GCWGC | 1 cut(s) | 314 |
| TspDTI | ATGAA | 3 cut(s) | 195, 291, 411 |
| TspGWI | ACGGA | 1 cut(s) | 16 |
| TspRI | CASTG | 1 cut(s) | 168 |
| XagI | CCTNNNNNAGG | 1 cut(s) | 294 |
| XapI | RAATTY | 1 cut(s) | 183 |
| Zsp2I | ATGCAT | 1 cut(s) | 246 |