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| Enzyme | Recognition Site | Cut Count | Positions (bp) |
|---|---|---|---|
| AarI | CACCTGC | 1 cut(s) | 599 |
| Acc36I | ACCTGC | 1 cut(s) | 599 |
| Acc65I | GGTACC | 1 cut(s) | 838 |
| AccB1I | GGYRCC | 1 cut(s) | 838 |
| AccI | GTMKAC | 1 cut(s) | 11 |
| AccII | CGCG | 1 cut(s) | 682 |
| AccIII | TCCGGA | 2 cut(s) | 320, 1027 |
| AciI | CCGC | 1 cut(s) | 198 |
| AclWI | GGATC | 5 cut(s) | 30, 295, 308, 935, 983 |
| AcoI | YGGCCR | 1 cut(s) | 954 |
| AcsI | RAATTY | 1 cut(s) | 972 |
| AfaI | GTAC | 3 cut(s) | 273, 840, 1020 |
| AfiI | CCNNNNNNNGG | 2 cut(s) | 135, 350 |
| AflIII | ACRYGT | 1 cut(s) | 268 |
| AgsI | TTSAA | 7 cut(s) | 117, 242, 463, 505, 670, 704, 1079 |
| AleI | CACNNNNGTG | 1 cut(s) | 402 |
| AluBI | AGCT | 4 cut(s) | 164, 356, 391, 1066 |
| AluI | AGCT | 4 cut(s) | 164, 356, 391, 1066 |
| Alw26I | GTCTC | 2 cut(s) | 1029, 1115 |
| AlwI | GGATC | 5 cut(s) | 30, 295, 308, 935, 983 |
| AlwNI | CAGNNNCTG | 1 cut(s) | 29 |
| Aor13HI | TCCGGA | 2 cut(s) | 320, 1027 |
| AoxI | GGCC | 1 cut(s) | 954 |
| ApeKI | GCWGC | 2 cut(s) | 125, 336 |
| ApoI | RAATTY | 1 cut(s) | 972 |
| Asp718I | GGTACC | 1 cut(s) | 838 |
| AspLEI | GCGC | 1 cut(s) | 682 |
| AspS9I | GGNCC | 3 cut(s) | 200, 614, 628 |
| AsuHPI | GGTGA | 1 cut(s) | 1154 |
| AsuNHI | GCTAGC | 1 cut(s) | 391 |
| AvaII | GGWCC | 3 cut(s) | 200, 614, 628 |
| AxyI | CCTNAGG | 1 cut(s) | 210 |
| BalI | TGGCCA | 1 cut(s) | 956 |
| BamHI | GGATCC | 1 cut(s) | 300 |
| BanI | GGYRCC | 1 cut(s) | 838 |
| BbvI | GCAGC | 2 cut(s) | 112, 323 |
| BccI | CCATC | 3 cut(s) | 368, 1120, 1163 |
| BceAI | ACGGC | 1 cut(s) | 808 |
| BciVI | GTATCC | 1 cut(s) | 792 |
| BclI | TGATCA | 1 cut(s) | 1000 |
| BcoDI | GTCTC | 2 cut(s) | 1029, 1115 |
| BfaI | CTAG | 5 cut(s) | 386, 392, 747, 873, 1067 |
| BfmI | CTRYAG | 1 cut(s) | 60 |
| BfuAI | ACCTGC | 1 cut(s) | 599 |
| BfuI | GTATCC | 1 cut(s) | 792 |
| BisI | GCNGC | 2 cut(s) | 126, 337 |
| BlsI | GCNGC | 2 cut(s) | 127, 338 |
| Bme18I | GGWCC | 3 cut(s) | 200, 614, 628 |
| BmgT120I | GGNCC | 3 cut(s) | 200, 614, 628 |
| BmiI | GGNNCC | 3 cut(s) | 302, 630, 840 |
| BmsI | GCATC | 4 cut(s) | 35, 95, 415, 721 |
| BmtI | GCTAGC | 1 cut(s) | 395 |
| BplI | GAGNNNNNCTC | 4 cut(s) | 245, 277, 1139, 1171 |
| BsaBI | GATNNNNATC | 1 cut(s) | 85 |
| BsaJI | CCNNGG | 2 cut(s) | 476, 1042 |
| BsaWI | WCCGGW | 2 cut(s) | 320, 1027 |
| Bsc4I | CCNNNNNNNGG | 2 cut(s) | 135, 350 |
| Bse1I | ACTGG | 1 cut(s) | 842 |
| Bse21I | CCTNAGG | 1 cut(s) | 210 |
| Bse3DI | GCAATG | 2 cut(s) | 219, 741 |
| Bse8I | GATNNNNATC | 1 cut(s) | 85 |
| BseAI | TCCGGA | 2 cut(s) | 320, 1027 |
| BseDI | CCNNGG | 2 cut(s) | 476, 1042 |
| BseGI | GGATG | 1 cut(s) | 167 |
| BseJI | GATNNNNATC | 1 cut(s) | 85 |
| BseLI | CCNNNNNNNGG | 2 cut(s) | 135, 350 |
| BseMI | GCAATG | 2 cut(s) | 219, 741 |
| BseMII | CTCAG | 3 cut(s) | 201, 276, 435 |
| BseNI | ACTGG | 1 cut(s) | 842 |
| BseRI | GAGGAG | 1 cut(s) | 121 |
| BseXI | GCAGC | 2 cut(s) | 112, 323 |
| Bsh1236I | CGCG | 1 cut(s) | 682 |
| BshFI | GGCC | 1 cut(s) | 956 |
| BshNI | GGYRCC | 1 cut(s) | 838 |
| BsiSI | CCGG | 2 cut(s) | 321, 1028 |
| BslFI | GGGAC | 1 cut(s) | 614 |
| BslI | CCNNNNNNNGG | 2 cut(s) | 135, 350 |
| BsmAI | GTCTC | 2 cut(s) | 1029, 1115 |
| BsmFI | GGGAC | 1 cut(s) | 614 |
| BsnI | GGCC | 1 cut(s) | 956 |
| Bsp13I | TCCGGA | 2 cut(s) | 320, 1027 |
| Bsp143I | GATC | 8 cut(s) | 17, 35, 80, 300, 695, 940, 988, 1000 |
| Bsp19I | CCATGG | 1 cut(s) | 1042 |
| BspACI | CCGC | 1 cut(s) | 198 |
| BspANI | GGCC | 1 cut(s) | 956 |
| BspCNI | CTCAG | 3 cut(s) | 202, 275, 436 |
| BspEI | TCCGGA | 2 cut(s) | 320, 1027 |
| BspFNI | CGCG | 1 cut(s) | 682 |
| BspLI | GGNNCC | 3 cut(s) | 302, 630, 840 |
| BspMI | ACCTGC | 1 cut(s) | 599 |
| BspOI | GCTAGC | 1 cut(s) | 395 |
| BspPI | GGATC | 5 cut(s) | 30, 295, 308, 935, 983 |
| BspQI | GCTCTTC | 1 cut(s) | 1056 |
| BspT107I | GGYRCC | 1 cut(s) | 838 |
| BsrDI | GCAATG | 2 cut(s) | 219, 741 |
| BsrI | ACTGG | 1 cut(s) | 842 |
| BssECI | CCNNGG | 2 cut(s) | 476, 1042 |
| BssMI | GATC | 8 cut(s) | 17, 35, 80, 300, 695, 940, 988, 1000 |
| BssT1I | CCWWGG | 2 cut(s) | 476, 1042 |
| Bst4CI | ACNGT | 6 cut(s) | 9, 61, 75, 295, 710, 1023 |
| Bst6I | CTCTTC | 2 cut(s) | 237, 1056 |
| BstC8I | GCNNGC | 2 cut(s) | 341, 393 |
| BstDEI | CTNAG | 4 cut(s) | 47, 210, 262, 444 |
| BstDSI | CCRYGG | 1 cut(s) | 1042 |
| BstF5I | GGATG | 1 cut(s) | 167 |
| BstFNI | CGCG | 1 cut(s) | 682 |
| BstHHI | GCGC | 1 cut(s) | 682 |
| BstKTI | GATC | 8 cut(s) | 20, 38, 83, 303, 698, 943, 991, 1003 |
| BstMAI | GTCTC | 2 cut(s) | 1029, 1115 |
| BstMBI | GATC | 8 cut(s) | 17, 35, 80, 300, 695, 940, 988, 1000 |
| BstMWI | GCNNNNNNNGC | 2 cut(s) | 388, 578 |
| BstNSI | RCATGY | 1 cut(s) | 965 |
| BstSFI | CTRYAG | 1 cut(s) | 60 |
| BstUI | CGCG | 1 cut(s) | 682 |
| BstV1I | GCAGC | 2 cut(s) | 112, 323 |
| BstX2I | RGATCY | 3 cut(s) | 35, 300, 988 |
| BstXI | CCANNNNNNTGG | 1 cut(s) | 1049 |
| BstYI | RGATCY | 3 cut(s) | 35, 300, 988 |
| Bsu36I | CCTNAGG | 1 cut(s) | 210 |
| BsuI | GTATCC | 1 cut(s) | 792 |
| BsuRI | GGCC | 1 cut(s) | 956 |
| BtgI | CCRYGG | 1 cut(s) | 1042 |
| BtgZI | GCGATG | 2 cut(s) | 80, 1188 |
| BtsCI | GGATG | 1 cut(s) | 167 |
| BtsIMutI | CAGTG | 3 cut(s) | 155, 441, 715 |
| BveI | ACCTGC | 1 cut(s) | 599 |
| Cac8I | GCNNGC | 2 cut(s) | 341, 393 |
| CaiI | CAGNNNCTG | 1 cut(s) | 29 |
| CfoI | GCGC | 1 cut(s) | 682 |
| Cfr13I | GGNCC | 3 cut(s) | 200, 614, 628 |
| CpoI | CGGWCCG | 1 cut(s) | 200 |
| Csp6I | GTAC | 3 cut(s) | 272, 839, 1019 |
| CspI | CGGWCCG | 1 cut(s) | 200 |
| CviAII | CATG | 4 cut(s) | 278, 650, 962, 1043 |
| CviQI | GTAC | 3 cut(s) | 272, 839, 1019 |
| DdeI | CTNAG | 4 cut(s) | 47, 210, 262, 444 |
| DpnI | GATC | 8 cut(s) | 19, 37, 82, 302, 697, 942, 990, 1002 |
| DpnII | GATC | 8 cut(s) | 17, 35, 80, 300, 695, 940, 988, 1000 |
| DraI | TTTAAA | 1 cut(s) | 936 |
| EaeI | YGGCCR | 1 cut(s) | 954 |
| Eam1104I | CTCTTC | 2 cut(s) | 237, 1056 |
| EarI | CTCTTC | 2 cut(s) | 237, 1056 |
| Eco130I | CCWWGG | 2 cut(s) | 476, 1042 |
| Eco47I | GGWCC | 3 cut(s) | 200, 614, 628 |
| Eco81I | CCTNAGG | 1 cut(s) | 210 |
| EcoO109I | RGGNCCY | 1 cut(s) | 628 |
| EcoT14I | CCWWGG | 2 cut(s) | 476, 1042 |
| ErhI | CCWWGG | 2 cut(s) | 476, 1042 |
| FaeI | CATG | 4 cut(s) | 281, 653, 965, 1046 |
| FalI | AAGNNNNNCTT | 2 cut(s) | 978, 1010 |
| FaqI | GGGAC | 1 cut(s) | 614 |
| FatI | CATG | 4 cut(s) | 277, 649, 961, 1042 |
| FauNDI | CATATG | 1 cut(s) | 450 |
| FbaI | TGATCA | 1 cut(s) | 1000 |
| FblI | GTMKAC | 1 cut(s) | 11 |
| Fnu4HI | GCNGC | 2 cut(s) | 126, 337 |
| FokI | GGATG | 1 cut(s) | 154 |
| Fsp4HI | GCNGC | 2 cut(s) | 126, 337 |
| FspBI | CTAG | 5 cut(s) | 386, 392, 747, 873, 1067 |
| GlaI | GCGC | 1 cut(s) | 681 |
| GluI | GCNGC | 2 cut(s) | 126, 337 |
| HaeIII | GGCC | 1 cut(s) | 956 |
| HapII | CCGG | 2 cut(s) | 321, 1028 |
| HhaI | GCGC | 1 cut(s) | 682 |
| Hin1II | CATG | 4 cut(s) | 281, 653, 965, 1046 |
| Hin6I | GCGC | 1 cut(s) | 680 |
| HinP1I | GCGC | 1 cut(s) | 680 |
| HincII | GTYRAC | 1 cut(s) | 870 |
| HindII | GTYRAC | 1 cut(s) | 870 |
| HinfI | GANTC | 4 cut(s) | 324, 373, 866, 879 |
| HpaII | CCGG | 2 cut(s) | 321, 1028 |
| HphI | GGTGA | 1 cut(s) | 1154 |
| Hpy166II | GTNNAC | 5 cut(s) | 12, 272, 614, 820, 870 |
| Hpy188I | TCNGA | 3 cut(s) | 265, 589, 695 |
| Hpy188III | TCNNGA | 6 cut(s) | 78, 209, 321, 351, 1028, 1166 |
| Hpy8I | GTNNAC | 5 cut(s) | 12, 272, 614, 820, 870 |
| HpyAV | CCTTC | 1 cut(s) | 1172 |
| HpyCH4III | ACNGT | 6 cut(s) | 9, 61, 75, 295, 710, 1023 |
| HpyCH4IV | ACGT | 1 cut(s) | 268 |
| HpyF10VI | GCNNNNNNNGC | 2 cut(s) | 388, 578 |
| HpyF3I | CTNAG | 4 cut(s) | 47, 210, 262, 444 |
| HpySE526I | ACGT | 1 cut(s) | 268 |
| Hsp92II | CATG | 4 cut(s) | 281, 653, 965, 1046 |
| HspAI | GCGC | 1 cut(s) | 680 |
| Kpn2I | TCCGGA | 2 cut(s) | 320, 1027 |
| KpnI | GGTACC | 1 cut(s) | 842 |
| Ksp22I | TGATCA | 1 cut(s) | 1000 |
| Kzo9I | GATC | 8 cut(s) | 17, 35, 80, 300, 695, 940, 988, 1000 |
| LguI | GCTCTTC | 1 cut(s) | 1056 |
| LmnI | GCTCC | 1 cut(s) | 353 |
| Lsp1109I | GCAGC | 2 cut(s) | 112, 323 |
| LweI | GCATC | 4 cut(s) | 35, 95, 415, 721 |
| MaeI | CTAG | 5 cut(s) | 386, 392, 747, 873, 1067 |
| MaeII | ACGT | 1 cut(s) | 268 |
| MaeIII | GTNAC | 5 cut(s) | 3, 145, 286, 683, 1052 |
| MalI | GATC | 8 cut(s) | 19, 37, 82, 302, 697, 942, 990, 1002 |
| MboI | GATC | 8 cut(s) | 17, 35, 80, 300, 695, 940, 988, 1000 |
| MboII | GAAGA | 6 cut(s) | 254, 434, 517, 998, 1073, 1082 |
| MfeI | CAATTG | 2 cut(s) | 249, 1116 |
| MflI | RGATCY | 3 cut(s) | 35, 300, 988 |
| MlsI | TGGCCA | 1 cut(s) | 956 |
| MluCI | AATT | 5 cut(s) | 249, 455, 972, 1094, 1116 |
| MluNI | TGGCCA | 1 cut(s) | 956 |
| MlyI | GAGTC | 2 cut(s) | 318, 875 |
| MmeI | TCCRAC | 1 cut(s) | 1170 |
| MnlI | CCTC | 8 cut(s) | 139, 142, 162, 205, 238, 540, 619, 1165 |
| Mox20I | TGGCCA | 1 cut(s) | 956 |
| MroI | TCCGGA | 2 cut(s) | 320, 1027 |
| MscI | TGGCCA | 1 cut(s) | 956 |
| MseI | TTAA | 8 cut(s) | 54, 308, 329, 467, 539, 654, 912, 935 |
| MslI | CAYNNNNRTG | 5 cut(s) | 282, 368, 402, 654, 936 |
| Msp20I | TGGCCA | 1 cut(s) | 956 |
| MspI | CCGG | 2 cut(s) | 321, 1028 |
| MunI | CAATTG | 2 cut(s) | 249, 1116 |
| MvnI | CGCG | 1 cut(s) | 682 |
| MwoI | GCNNNNNNNGC | 2 cut(s) | 388, 578 |
| NcoI | CCATGG | 1 cut(s) | 1042 |
| NdeI | CATATG | 1 cut(s) | 450 |
| NdeII | GATC | 8 cut(s) | 17, 35, 80, 300, 695, 940, 988, 1000 |
| NheI | GCTAGC | 1 cut(s) | 391 |
| NlaIII | CATG | 4 cut(s) | 281, 653, 965, 1046 |
| NlaIV | GGNNCC | 3 cut(s) | 302, 630, 840 |
| NmuCI | GTSAC | 3 cut(s) | 3, 145, 683 |
| NspI | RCATGY | 1 cut(s) | 965 |
| OliI | CACNNNNGTG | 1 cut(s) | 402 |
| PaqCI | CACCTGC | 1 cut(s) | 599 |
| PciSI | GCTCTTC | 1 cut(s) | 1056 |
| PfeI | GAWTC | 2 cut(s) | 373, 879 |
| PflFI | GACNNNGTC | 1 cut(s) | 689 |
| PkrI | GCNGC | 2 cut(s) | 127, 338 |
| PleI | GAGTC | 2 cut(s) | 318, 874 |
| PpsI | GAGTC | 2 cut(s) | 318, 874 |
| PpuMI | RGGWCCY | 1 cut(s) | 628 |
| Psp5II | RGGWCCY | 1 cut(s) | 628 |
| PspN4I | GGNNCC | 3 cut(s) | 302, 630, 840 |
| PspPI | GGNCC | 3 cut(s) | 200, 614, 628 |
| PspPPI | RGGWCCY | 1 cut(s) | 628 |
| PstNI | CAGNNNCTG | 1 cut(s) | 29 |
| PsuI | RGATCY | 3 cut(s) | 35, 300, 988 |
| PsyI | GACNNNGTC | 1 cut(s) | 689 |
| RsaI | GTAC | 3 cut(s) | 273, 840, 1020 |
| RsaNI | GTAC | 3 cut(s) | 272, 839, 1019 |
| RseI | CAYNNNNRTG | 5 cut(s) | 282, 368, 402, 654, 936 |
| Rsr2I | CGGWCCG | 1 cut(s) | 200 |
| RsrII | CGGWCCG | 1 cut(s) | 200 |
| SapI | GCTCTTC | 1 cut(s) | 1056 |
| SaqAI | TTAA | 8 cut(s) | 54, 308, 329, 467, 539, 654, 912, 935 |
| SatI | GCNGC | 2 cut(s) | 126, 337 |
| Sau3AI | GATC | 8 cut(s) | 17, 35, 80, 300, 695, 940, 988, 1000 |
| Sau96I | GGNCC | 3 cut(s) | 200, 614, 628 |
| SchI | GAGTC | 2 cut(s) | 318, 875 |
| SfaNI | GCATC | 4 cut(s) | 35, 95, 415, 721 |
| SfcI | CTRYAG | 1 cut(s) | 60 |
| SinI | GGWCC | 3 cut(s) | 200, 614, 628 |
| SmiI | ATTTAAAT | 1 cut(s) | 936 |
| SmiMI | CAYNNNNRTG | 5 cut(s) | 282, 368, 402, 654, 936 |
| Sse9I | AATT | 5 cut(s) | 249, 455, 972, 1094, 1116 |
| SsiI | CCGC | 1 cut(s) | 198 |
| SspMI | CTAG | 5 cut(s) | 386, 392, 747, 873, 1067 |
| StyI | CCWWGG | 2 cut(s) | 476, 1042 |
| SwaI | ATTTAAAT | 1 cut(s) | 936 |
| TaaI | ACNGT | 6 cut(s) | 9, 61, 75, 295, 710, 1023 |
| TaiI | ACGT | 1 cut(s) | 271 |
| TaqI | TCGA | 1 cut(s) | 1165 |
| TasI | AATT | 5 cut(s) | 249, 455, 972, 1094, 1116 |
| TatI | WGTACW | 1 cut(s) | 271 |
| TfiI | GAWTC | 2 cut(s) | 373, 879 |
| Tru1I | TTAA | 8 cut(s) | 54, 308, 329, 467, 539, 654, 912, 935 |
| Tru9I | TTAA | 8 cut(s) | 54, 308, 329, 467, 539, 654, 912, 935 |
| TscAI | CASTG | 3 cut(s) | 162, 448, 715 |
| TseFI | GTSAC | 3 cut(s) | 3, 145, 683 |
| TseI | GCWGC | 2 cut(s) | 125, 336 |
| Tsp45I | GTSAC | 3 cut(s) | 3, 145, 683 |
| TspDTI | ATGAA | 6 cut(s) | 83, 266, 573, 906, 1074, 1191 |
| TspGWI | ACGGA | 1 cut(s) | 192 |
| TspRI | CASTG | 3 cut(s) | 162, 448, 715 |
| Tth111I | GACNNNGTC | 1 cut(s) | 689 |
| VpaK11BI | GGWCC | 3 cut(s) | 200, 614, 628 |
| XapI | RAATTY | 1 cut(s) | 972 |
| XceI | RCATGY | 1 cut(s) | 965 |
| XmiI | GTMKAC | 1 cut(s) | 11 |
| XspI | CTAG | 5 cut(s) | 386, 392, 747, 873, 1067 |