Transposase-associated domain
| Domain Name | Pfam ID | Position | E-value | Description |
|---|---|---|---|---|
| Transpos_assoc | PF13963 | 3 - 75 | 4.1e-14 | Transposase-associated domain |
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| Enzyme | Recognition Site | Cut Count | Positions (bp) |
|---|---|---|---|
| Acc36I | ACCTGC | 1 cut(s) | 397 |
| AccI | GTMKAC | 1 cut(s) | 915 |
| AccII | CGCG | 2 cut(s) | 1172, 1439 |
| AciI | CCGC | 3 cut(s) | 145, 742, 1439 |
| AcoI | YGGCCR | 1 cut(s) | 648 |
| AcsI | RAATTY | 3 cut(s) | 41, 61, 254 |
| AcuI | CTGAAG | 1 cut(s) | 201 |
| AfaI | GTAC | 8 cut(s) | 164, 399, 665, 677, 722, 896, 1029, 1299 |
| AfeI | AGCGCT | 1 cut(s) | 1449 |
| AfiI | CCNNNNNNNGG | 5 cut(s) | 85, 283, 357, 358, 833 |
| AflIII | ACRYGT | 1 cut(s) | 1170 |
| AgeI | ACCGGT | 1 cut(s) | 833 |
| AgsI | TTSAA | 6 cut(s) | 59, 259, 453, 544, 1139, 1201 |
| AjnI | CCWGG | 4 cut(s) | 11, 151, 445, 1396 |
| AjuI | GAANNNNNNNTTGG | 2 cut(s) | 227, 259 |
| AluBI | AGCT | 5 cut(s) | 22, 179, 341, 547, 1338 |
| AluI | AGCT | 5 cut(s) | 22, 179, 341, 547, 1338 |
| Alw21I | GWGCWC | 1 cut(s) | 1365 |
| Alw26I | GTCTC | 5 cut(s) | 94, 520, 569, 1140, 1309 |
| Alw44I | GTGCAC | 1 cut(s) | 1361 |
| Aor51HI | AGCGCT | 1 cut(s) | 1449 |
| AoxI | GGCC | 3 cut(s) | 426, 648, 655 |
| ApaLI | GTGCAC | 1 cut(s) | 1361 |
| ApoI | RAATTY | 3 cut(s) | 41, 61, 254 |
| AsiGI | ACCGGT | 1 cut(s) | 833 |
| AspA2I | CCTAGG | 1 cut(s) | 1378 |
| AspLEI | GCGC | 3 cut(s) | 486, 1396, 1450 |
| AspS9I | GGNCC | 3 cut(s) | 185, 656, 1125 |
| AsuC2I | CCSGG | 1 cut(s) | 804 |
| AsuHPI | GGTGA | 7 cut(s) | 233, 339, 584, 848, 1105, 1250, 1453 |
| AvaII | GGWCC | 2 cut(s) | 185, 1125 |
| AvrII | CCTAGG | 1 cut(s) | 1378 |
| AxyI | CCTNAGG | 1 cut(s) | 282 |
| BaeGI | GKGCMC | 1 cut(s) | 1365 |
| BalI | TGGCCA | 1 cut(s) | 650 |
| BanII | GRGCYC | 1 cut(s) | 152 |
| BarI | GAAGNNNNNNTAC | 2 cut(s) | 668, 700 |
| BauI | CACGAG | 1 cut(s) | 95 |
| BbsI | GAAGAC | 1 cut(s) | 279 |
| Bbv12I | GWGCWC | 1 cut(s) | 1365 |
| BccI | CCATC | 7 cut(s) | 194, 359, 563, 911, 1037, 1268, 1286 |
| BceAI | ACGGC | 1 cut(s) | 694 |
| BciT130I | CCWGG | 4 cut(s) | 13, 153, 447, 1398 |
| BciVI | GTATCC | 2 cut(s) | 1167, 1185 |
| BclI | TGATCA | 1 cut(s) | 636 |
| BcnI | CCSGG | 1 cut(s) | 804 |
| BcoDI | GTCTC | 5 cut(s) | 94, 520, 569, 1140, 1309 |
| BfaI | CTAG | 4 cut(s) | 293, 342, 479, 1379 |
| BfmI | CTRYAG | 1 cut(s) | 390 |
| BfoI | RGCGCY | 2 cut(s) | 1397, 1451 |
| BfuAI | ACCTGC | 1 cut(s) | 397 |
| BfuI | GTATCC | 2 cut(s) | 1167, 1185 |
| BisI | GCNGC | 1 cut(s) | 742 |
| BlnI | CCTAGG | 1 cut(s) | 1378 |
| BlsI | GCNGC | 1 cut(s) | 743 |
| BmcAI | AGTACT | 1 cut(s) | 1029 |
| Bme1390I | CCNGG | 5 cut(s) | 13, 153, 447, 804, 1398 |
| Bme18I | GGWCC | 2 cut(s) | 185, 1125 |
| BmgT120I | GGNCC | 3 cut(s) | 185, 656, 1125 |
| BmiI | GGNNCC | 3 cut(s) | 149, 658, 776 |
| BmrFI | CCNGG | 5 cut(s) | 13, 153, 447, 804, 1398 |
| BmsI | GCATC | 2 cut(s) | 307, 1314 |
| BpiI | GAAGAC | 1 cut(s) | 279 |
| BpuMI | CCSGG | 1 cut(s) | 804 |
| BsaAI | YACGTR | 1 cut(s) | 1057 |
| BsaI | GGTCTC | 1 cut(s) | 94 |
| BsaJI | CCNNGG | 6 cut(s) | 12, 151, 802, 1160, 1378, 1397 |
| BsaWI | WCCGGW | 1 cut(s) | 833 |
| BsaXI | ACNNNNNCTCC | 2 cut(s) | 139, 169 |
| Bsc4I | CCNNNNNNNGG | 5 cut(s) | 85, 283, 357, 358, 833 |
| Bse118I | RCCGGY | 2 cut(s) | 653, 833 |
| Bse1I | ACTGG | 1 cut(s) | 718 |
| Bse21I | CCTNAGG | 1 cut(s) | 282 |
| Bse3DI | GCAATG | 1 cut(s) | 775 |
| BseBI | CCWGG | 4 cut(s) | 13, 153, 447, 1398 |
| BseDI | CCNNGG | 6 cut(s) | 12, 151, 802, 1160, 1378, 1397 |
| BseGI | GGATG | 6 cut(s) | 66, 217, 307, 367, 1048, 1329 |
| BseLI | CCNNNNNNNGG | 5 cut(s) | 85, 283, 357, 358, 833 |
| BseMI | GCAATG | 1 cut(s) | 775 |
| BseMII | CTCAG | 1 cut(s) | 273 |
| BseNI | ACTGG | 1 cut(s) | 718 |
| BseRI | GAGGAG | 1 cut(s) | 525 |
| BseSI | GKGCMC | 1 cut(s) | 1365 |
| Bsh1236I | CGCG | 2 cut(s) | 1172, 1439 |
| BshFI | GGCC | 3 cut(s) | 428, 650, 657 |
| BshTI | ACCGGT | 1 cut(s) | 833 |
| BsiHKAI | GWGCWC | 1 cut(s) | 1365 |
| BsiSI | CCGG | 4 cut(s) | 654, 804, 834, 1465 |
| BslFI | GGGAC | 2 cut(s) | 772, 885 |
| BslI | CCNNNNNNNGG | 5 cut(s) | 85, 283, 357, 358, 833 |
| BsmAI | GTCTC | 5 cut(s) | 94, 520, 569, 1140, 1309 |
| BsmFI | GGGAC | 2 cut(s) | 772, 885 |
| BsnI | GGCC | 3 cut(s) | 428, 650, 657 |
| Bso31I | GGTCTC | 1 cut(s) | 94 |
| Bsp1286I | GDGCHC | 2 cut(s) | 152, 1365 |
| Bsp1407I | TGTACA | 1 cut(s) | 162 |
| Bsp143I | GATC | 2 cut(s) | 636, 1240 |
| BspACI | CCGC | 3 cut(s) | 145, 742, 1439 |
| BspANI | GGCC | 3 cut(s) | 428, 650, 657 |
| BspCNI | CTCAG | 1 cut(s) | 274 |
| BspFNI | CGCG | 2 cut(s) | 1172, 1439 |
| BspHI | TCATGA | 1 cut(s) | 963 |
| BspLI | GGNNCC | 3 cut(s) | 149, 658, 776 |
| BspMAI | CTGCAG | 1 cut(s) | 394 |
| BspMI | ACCTGC | 1 cut(s) | 397 |
| BspQI | GCTCTTC | 1 cut(s) | 1422 |
| BspTNI | GGTCTC | 1 cut(s) | 94 |
| BsrDI | GCAATG | 1 cut(s) | 775 |
| BsrFI | RCCGGY | 2 cut(s) | 653, 833 |
| BsrGI | TGTACA | 1 cut(s) | 162 |
| BsrI | ACTGG | 1 cut(s) | 718 |
| BssAI | RCCGGY | 2 cut(s) | 653, 833 |
| BssECI | CCNNGG | 6 cut(s) | 12, 151, 802, 1160, 1378, 1397 |
| BssMI | GATC | 2 cut(s) | 636, 1240 |
| BssSI | CACGAG | 1 cut(s) | 95 |
| BssT1I | CCWWGG | 1 cut(s) | 1378 |
| Bst2BI | CACGAG | 1 cut(s) | 95 |
| Bst2UI | CCWGG | 4 cut(s) | 13, 153, 447, 1398 |
| Bst4CI | ACNGT | 4 cut(s) | 529, 899, 970, 1063 |
| Bst6I | CTCTTC | 1 cut(s) | 1422 |
| BstAUI | TGTACA | 1 cut(s) | 162 |
| BstBAI | YACGTR | 1 cut(s) | 1057 |
| BstC8I | GCNNGC | 1 cut(s) | 1218 |
| BstDEI | CTNAG | 2 cut(s) | 247, 282 |
| BstDSI | CCRYGG | 1 cut(s) | 1160 |
| BstF5I | GGATG | 6 cut(s) | 66, 217, 307, 367, 1048, 1329 |
| BstFNI | CGCG | 2 cut(s) | 1172, 1439 |
| BstH2I | RGCGCY | 2 cut(s) | 1397, 1451 |
| BstHHI | GCGC | 3 cut(s) | 486, 1396, 1450 |
| BstKTI | GATC | 2 cut(s) | 639, 1243 |
| BstMAI | GTCTC | 5 cut(s) | 94, 520, 569, 1140, 1309 |
| BstMBI | GATC | 2 cut(s) | 636, 1240 |
| BstMWI | GCNNNNNNNGC | 5 cut(s) | 1222, 1383, 1445, 1456, 1465 |
| BstNI | CCWGG | 4 cut(s) | 13, 153, 447, 1398 |
| BstSCI | CCNGG | 5 cut(s) | 11, 151, 445, 802, 1396 |
| BstSFI | CTRYAG | 1 cut(s) | 390 |
| BstSLI | GKGCMC | 1 cut(s) | 1365 |
| BstSNI | TACGTA | 1 cut(s) | 1057 |
| BstUI | CGCG | 2 cut(s) | 1172, 1439 |
| BstV2I | GAAGAC | 1 cut(s) | 279 |
| Bsu36I | CCTNAGG | 1 cut(s) | 282 |
| BsuI | GTATCC | 2 cut(s) | 1167, 1185 |
| BsuRI | GGCC | 3 cut(s) | 428, 650, 657 |
| BtgI | CCRYGG | 1 cut(s) | 1160 |
| BtsCI | GGATG | 6 cut(s) | 66, 217, 307, 367, 1048, 1329 |
| BtsIMutI | CAGTG | 1 cut(s) | 646 |
| BveI | ACCTGC | 1 cut(s) | 397 |
| Cac8I | GCNNGC | 1 cut(s) | 1218 |
| CciI | TCATGA | 1 cut(s) | 963 |
| CfoI | GCGC | 3 cut(s) | 486, 1396, 1450 |
| Cfr10I | RCCGGY | 2 cut(s) | 653, 833 |
| Cfr13I | GGNCC | 3 cut(s) | 185, 656, 1125 |
| Csp6I | GTAC | 8 cut(s) | 163, 398, 664, 676, 721, 895, 1028, 1298 |
| CspAI | ACCGGT | 1 cut(s) | 833 |
| CviAII | CATG | 8 cut(s) | 172, 218, 298, 376, 765, 791, 829, 964 |
| CviQI | GTAC | 8 cut(s) | 163, 398, 664, 676, 721, 895, 1028, 1298 |
| DdeI | CTNAG | 2 cut(s) | 247, 282 |
| DpnI | GATC | 2 cut(s) | 638, 1242 |
| DpnII | GATC | 2 cut(s) | 636, 1240 |
| EaeI | YGGCCR | 1 cut(s) | 648 |
| Eam1104I | CTCTTC | 1 cut(s) | 1422 |
| EarI | CTCTTC | 1 cut(s) | 1422 |
| EciI | GGCGGA | 1 cut(s) | 160 |
| Eco105I | TACGTA | 1 cut(s) | 1057 |
| Eco130I | CCWWGG | 1 cut(s) | 1378 |
| Eco24I | GRGCYC | 1 cut(s) | 152 |
| Eco31I | GGTCTC | 1 cut(s) | 94 |
| Eco47I | GGWCC | 2 cut(s) | 185, 1125 |
| Eco47III | AGCGCT | 1 cut(s) | 1449 |
| Eco57I | CTGAAG | 1 cut(s) | 201 |
| Eco81I | CCTNAGG | 1 cut(s) | 282 |
| EcoRI | GAATTC | 1 cut(s) | 254 |
| EcoRII | CCWGG | 4 cut(s) | 11, 151, 445, 1396 |
| EcoT14I | CCWWGG | 1 cut(s) | 1378 |
| EcoT22I | ATGCAT | 2 cut(s) | 322, 1329 |
| EcoT38I | GRGCYC | 1 cut(s) | 152 |
| ErhI | CCWWGG | 1 cut(s) | 1378 |
| FaeI | CATG | 8 cut(s) | 175, 221, 301, 379, 768, 794, 832, 967 |
| FaqI | GGGAC | 2 cut(s) | 772, 885 |
| FatI | CATG | 8 cut(s) | 171, 217, 297, 375, 764, 790, 828, 963 |
| FbaI | TGATCA | 1 cut(s) | 636 |
| FblI | GTMKAC | 1 cut(s) | 915 |
| Fnu4HI | GCNGC | 1 cut(s) | 742 |
| FokI | GGATG | 6 cut(s) | 53, 224, 314, 374, 1055, 1336 |
| FriOI | GRGCYC | 1 cut(s) | 152 |
| Fsp4HI | GCNGC | 1 cut(s) | 742 |
| FspBI | CTAG | 4 cut(s) | 293, 342, 479, 1379 |
| GlaI | GCGC | 3 cut(s) | 485, 1395, 1449 |
| GluI | GCNGC | 1 cut(s) | 742 |
| HaeII | RGCGCY | 2 cut(s) | 1397, 1451 |
| HaeIII | GGCC | 3 cut(s) | 428, 650, 657 |
| HapII | CCGG | 4 cut(s) | 654, 804, 834, 1465 |
| HhaI | GCGC | 3 cut(s) | 486, 1396, 1450 |
| Hin1II | CATG | 8 cut(s) | 175, 221, 301, 379, 768, 794, 832, 967 |
| Hin6I | GCGC | 3 cut(s) | 484, 1394, 1448 |
| HinP1I | GCGC | 3 cut(s) | 484, 1394, 1448 |
| HincII | GTYRAC | 1 cut(s) | 312 |
| HindII | GTYRAC | 1 cut(s) | 312 |
| HinfI | GANTC | 5 cut(s) | 405, 513, 1118, 1309, 1434 |
| HpaII | CCGG | 4 cut(s) | 654, 804, 834, 1465 |
| HphI | GGTGA | 7 cut(s) | 233, 339, 584, 848, 1105, 1250, 1453 |
| Hpy166II | GTNNAC | 5 cut(s) | 163, 312, 347, 916, 1363 |
| Hpy188III | TCNNGA | 4 cut(s) | 188, 507, 566, 964 |
| Hpy8I | GTNNAC | 5 cut(s) | 163, 312, 347, 916, 1363 |
| HpyAV | CCTTC | 3 cut(s) | 176, 1093, 1449 |
| HpyCH4III | ACNGT | 4 cut(s) | 529, 899, 970, 1063 |
| HpyCH4IV | ACGT | 1 cut(s) | 1056 |
| HpyCH4V | TGCA | 7 cut(s) | 197, 320, 371, 392, 768, 1327, 1363 |
| HpyF10VI | GCNNNNNNNGC | 5 cut(s) | 1222, 1383, 1445, 1456, 1465 |
| HpyF3I | CTNAG | 2 cut(s) | 247, 282 |
| HpySE526I | ACGT | 1 cut(s) | 1056 |
| Hsp92II | CATG | 8 cut(s) | 175, 221, 301, 379, 768, 794, 832, 967 |
| HspAI | GCGC | 3 cut(s) | 484, 1394, 1448 |
| Ksp22I | TGATCA | 1 cut(s) | 636 |
| Kzo9I | GATC | 2 cut(s) | 636, 1240 |
| LguI | GCTCTTC | 1 cut(s) | 1422 |
| LmnI | GCTCC | 1 cut(s) | 147 |
| LweI | GCATC | 2 cut(s) | 307, 1314 |
| MaeI | CTAG | 4 cut(s) | 293, 342, 479, 1379 |
| MaeII | ACGT | 1 cut(s) | 1056 |
| MaeIII | GTNAC | 2 cut(s) | 1057, 1404 |
| MalI | GATC | 2 cut(s) | 638, 1242 |
| MboI | GATC | 2 cut(s) | 636, 1240 |
| MboII | GAAGA | 4 cut(s) | 236, 284, 790, 1409 |
| MhlI | GDGCHC | 2 cut(s) | 152, 1365 |
| MlsI | TGGCCA | 1 cut(s) | 650 |
| MluCI | AATT | 6 cut(s) | 41, 61, 254, 610, 1140, 1471 |
| MluI | ACGCGT | 1 cut(s) | 1170 |
| MluNI | TGGCCA | 1 cut(s) | 650 |
| MlyI | GAGTC | 3 cut(s) | 399, 522, 1127 |
| MmeI | TCCRAC | 3 cut(s) | 31, 450, 738 |
| Mox20I | TGGCCA | 1 cut(s) | 650 |
| Mph1103I | ATGCAT | 2 cut(s) | 322, 1329 |
| MscI | TGGCCA | 1 cut(s) | 650 |
| MseI | TTAA | 6 cut(s) | 18, 45, 108, 957, 1113, 1350 |
| MslI | CAYNNNNRTG | 1 cut(s) | 990 |
| Msp20I | TGGCCA | 1 cut(s) | 650 |
| MspI | CCGG | 4 cut(s) | 654, 804, 834, 1465 |
| MspR9I | CCNGG | 5 cut(s) | 13, 153, 447, 804, 1398 |
| MvaI | CCWGG | 4 cut(s) | 13, 153, 447, 1398 |
| MvnI | CGCG | 2 cut(s) | 1172, 1439 |
| MwoI | GCNNNNNNNGC | 5 cut(s) | 1222, 1383, 1445, 1456, 1465 |
| NciI | CCSGG | 1 cut(s) | 804 |
| NdeII | GATC | 2 cut(s) | 636, 1240 |
| NlaIII | CATG | 8 cut(s) | 175, 221, 301, 379, 768, 794, 832, 967 |
| NlaIV | GGNNCC | 3 cut(s) | 149, 658, 776 |
| NmuCI | GTSAC | 1 cut(s) | 1404 |
| NsiI | ATGCAT | 2 cut(s) | 322, 1329 |
| PagI | TCATGA | 1 cut(s) | 963 |
| PciSI | GCTCTTC | 1 cut(s) | 1422 |
| PfeI | GAWTC | 2 cut(s) | 1309, 1434 |
| PinAI | ACCGGT | 1 cut(s) | 833 |
| PkrI | GCNGC | 1 cut(s) | 743 |
| PleI | GAGTC | 3 cut(s) | 399, 521, 1126 |
| PpsI | GAGTC | 3 cut(s) | 399, 521, 1126 |
| Ppu21I | YACGTR | 1 cut(s) | 1057 |
| Psp6I | CCWGG | 4 cut(s) | 11, 151, 445, 1396 |
| PspGI | CCWGG | 4 cut(s) | 11, 151, 445, 1396 |
| PspN4I | GGNNCC | 3 cut(s) | 149, 658, 776 |
| PspPI | GGNCC | 3 cut(s) | 185, 656, 1125 |
| PstI | CTGCAG | 1 cut(s) | 394 |
| RsaI | GTAC | 8 cut(s) | 164, 399, 665, 677, 722, 896, 1029, 1299 |
| RsaNI | GTAC | 8 cut(s) | 163, 398, 664, 676, 721, 895, 1028, 1298 |
| RseI | CAYNNNNRTG | 1 cut(s) | 990 |
| SapI | GCTCTTC | 1 cut(s) | 1422 |
| SaqAI | TTAA | 6 cut(s) | 18, 45, 108, 957, 1113, 1350 |
| SatI | GCNGC | 1 cut(s) | 742 |
| Sau3AI | GATC | 2 cut(s) | 636, 1240 |
| Sau96I | GGNCC | 3 cut(s) | 185, 656, 1125 |
| ScaI | AGTACT | 1 cut(s) | 1029 |
| SchI | GAGTC | 3 cut(s) | 399, 522, 1127 |
| ScrFI | CCNGG | 5 cut(s) | 13, 153, 447, 804, 1398 |
| SduI | GDGCHC | 2 cut(s) | 152, 1365 |
| SfaNI | GCATC | 2 cut(s) | 307, 1314 |
| SfcI | CTRYAG | 1 cut(s) | 390 |
| SinI | GGWCC | 2 cut(s) | 185, 1125 |
| SmiMI | CAYNNNNRTG | 1 cut(s) | 990 |
| SnaBI | TACGTA | 1 cut(s) | 1057 |
| Sse9I | AATT | 6 cut(s) | 41, 61, 254, 610, 1140, 1471 |
| SsiI | CCGC | 3 cut(s) | 145, 742, 1439 |
| SspI | AATATT | 1 cut(s) | 812 |
| SspMI | CTAG | 4 cut(s) | 293, 342, 479, 1379 |
| StyD4I | CCNGG | 5 cut(s) | 11, 151, 445, 802, 1396 |
| StyI | CCWWGG | 1 cut(s) | 1378 |
| TaaI | ACNGT | 4 cut(s) | 529, 899, 970, 1063 |
| TaiI | ACGT | 1 cut(s) | 1059 |
| TaqI | TCGA | 1 cut(s) | 121 |
| TasI | AATT | 6 cut(s) | 41, 61, 254, 610, 1140, 1471 |
| TatI | WGTACW | 4 cut(s) | 162, 397, 1027, 1297 |
| TauI | GCSGC | 1 cut(s) | 744 |
| TfiI | GAWTC | 2 cut(s) | 1309, 1434 |
| Tru1I | TTAA | 6 cut(s) | 18, 45, 108, 957, 1113, 1350 |
| Tru9I | TTAA | 6 cut(s) | 18, 45, 108, 957, 1113, 1350 |
| TscAI | CASTG | 1 cut(s) | 646 |
| TseFI | GTSAC | 1 cut(s) | 1404 |
| Tsp45I | GTSAC | 1 cut(s) | 1404 |
| TspGWI | ACGGA | 1 cut(s) | 875 |
| TspRI | CASTG | 1 cut(s) | 646 |
| VneI | GTGCAC | 1 cut(s) | 1361 |
| VpaK11BI | GGWCC | 2 cut(s) | 185, 1125 |
| XapI | RAATTY | 3 cut(s) | 41, 61, 254 |
| XmaJI | CCTAGG | 1 cut(s) | 1378 |
| XmiI | GTMKAC | 1 cut(s) | 915 |
| XspI | CTAG | 4 cut(s) | 293, 342, 479, 1379 |
| ZrmI | AGTACT | 1 cut(s) | 1029 |
| Zsp2I | ATGCAT | 2 cut(s) | 322, 1329 |