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| Enzyme | Recognition Site | Cut Count | Positions (bp) |
|---|---|---|---|
| AasI | GACNNNNNNGTC | 1 cut(s) | 1432 |
| AciI | CCGC | 3 cut(s) | 824, 1048, 1597 |
| AclWI | GGATC | 7 cut(s) | 32, 48, 779, 1193, 1202, 1667, 1680 |
| AcoI | YGGCCR | 1 cut(s) | 1608 |
| AcsI | RAATTY | 5 cut(s) | 851, 1017, 1123, 1182, 1492 |
| AcuI | CTGAAG | 2 cut(s) | 657, 960 |
| AfaI | GTAC | 4 cut(s) | 474, 554, 698, 1567 |
| AfiI | CCNNNNNNNGG | 3 cut(s) | 566, 1243, 1606 |
| AflII | CTTAAG | 2 cut(s) | 719, 1577 |
| AgeI | ACCGGT | 1 cut(s) | 316 |
| AgsI | TTSAA | 8 cut(s) | 219, 604, 1083, 1129, 1331, 1431, 1464, 1491 |
| AjnI | CCWGG | 1 cut(s) | 4 |
| AleI | CACNNNNGTG | 1 cut(s) | 1118 |
| AluBI | AGCT | 8 cut(s) | 52, 391, 686, 944, 996, 1027, 1276, 1582 |
| AluI | AGCT | 8 cut(s) | 52, 391, 686, 944, 996, 1027, 1276, 1582 |
| Alw26I | GTCTC | 7 cut(s) | 255, 413, 583, 900, 1367, 1411, 1636 |
| AlwI | GGATC | 7 cut(s) | 32, 48, 779, 1193, 1202, 1667, 1680 |
| AoxI | GGCC | 6 cut(s) | 30, 1050, 1138, 1479, 1573, 1608 |
| ApaI | GGGCCC | 1 cut(s) | 1054 |
| ApeKI | GCWGC | 5 cut(s) | 366, 391, 594, 1499, 1582 |
| ApoI | RAATTY | 5 cut(s) | 851, 1017, 1123, 1182, 1492 |
| AsiGI | ACCGGT | 1 cut(s) | 316 |
| AspA2I | CCTAGG | 1 cut(s) | 1211 |
| AspS9I | GGNCC | 6 cut(s) | 31, 89, 178, 830, 1050, 1051 |
| AsuHPI | GGTGA | 5 cut(s) | 766, 1018, 1105, 1289, 1586 |
| AsuII | TTCGAA | 1 cut(s) | 122 |
| AvaII | GGWCC | 3 cut(s) | 89, 178, 830 |
| AvrII | CCTAGG | 1 cut(s) | 1211 |
| AxyI | CCTNAGG | 1 cut(s) | 230 |
| BaeGI | GKGCMC | 1 cut(s) | 1054 |
| BalI | TGGCCA | 1 cut(s) | 1610 |
| BamHI | GGATCC | 1 cut(s) | 1672 |
| BanII | GRGCYC | 1 cut(s) | 1054 |
| BbsI | GAAGAC | 4 cut(s) | 514, 764, 1430, 1452 |
| BbvI | GCAGC | 5 cut(s) | 378, 378, 606, 1486, 1569 |
| BccI | CCATC | 5 cut(s) | 14, 80, 810, 1330, 1553 |
| BceAI | ACGGC | 1 cut(s) | 1638 |
| BciT130I | CCWGG | 1 cut(s) | 6 |
| BclI | TGATCA | 1 cut(s) | 1294 |
| BcoDI | GTCTC | 7 cut(s) | 255, 413, 583, 900, 1367, 1411, 1636 |
| BfmI | CTRYAG | 2 cut(s) | 978, 1203 |
| BfrI | CTTAAG | 2 cut(s) | 719, 1577 |
| BisI | GCNGC | 5 cut(s) | 367, 392, 595, 1500, 1583 |
| BlnI | CCTAGG | 1 cut(s) | 1211 |
| BlsI | GCNGC | 5 cut(s) | 368, 393, 596, 1501, 1584 |
| Bme1390I | CCNGG | 1 cut(s) | 6 |
| Bme18I | GGWCC | 3 cut(s) | 89, 178, 830 |
| BmgT120I | GGNCC | 6 cut(s) | 31, 89, 178, 830, 1050, 1051 |
| BmiI | GGNNCC | 3 cut(s) | 180, 1052, 1674 |
| BmrFI | CCNGG | 1 cut(s) | 6 |
| BmsI | GCATC | 2 cut(s) | 622, 1684 |
| BpiI | GAAGAC | 4 cut(s) | 514, 764, 1430, 1452 |
| Bpu14I | TTCGAA | 1 cut(s) | 122 |
| BpuEI | CTTGAG | 2 cut(s) | 455, 1571 |
| Bsa29I | ATCGAT | 1 cut(s) | 103 |
| BsaBI | GATNNNNATC | 1 cut(s) | 972 |
| BsaJI | CCNNGG | 3 cut(s) | 692, 1211, 1470 |
| BsaWI | WCCGGW | 1 cut(s) | 316 |
| Bsc4I | CCNNNNNNNGG | 3 cut(s) | 566, 1243, 1606 |
| Bse118I | RCCGGY | 1 cut(s) | 316 |
| Bse1I | ACTGG | 2 cut(s) | 880, 1573 |
| Bse21I | CCTNAGG | 1 cut(s) | 230 |
| Bse8I | GATNNNNATC | 1 cut(s) | 972 |
| BseBI | CCWGG | 1 cut(s) | 6 |
| BseCI | ATCGAT | 1 cut(s) | 103 |
| BseDI | CCNNGG | 3 cut(s) | 692, 1211, 1470 |
| BseGI | GGATG | 2 cut(s) | 229, 249 |
| BseJI | GATNNNNATC | 1 cut(s) | 972 |
| BseLI | CCNNNNNNNGG | 3 cut(s) | 566, 1243, 1606 |
| BseMII | CTCAG | 1 cut(s) | 227 |
| BseNI | ACTGG | 2 cut(s) | 880, 1573 |
| BseRI | GAGGAG | 1 cut(s) | 571 |
| BseSI | GKGCMC | 1 cut(s) | 1054 |
| BseXI | GCAGC | 5 cut(s) | 378, 378, 606, 1486, 1569 |
| BseYI | CCCAGC | 1 cut(s) | 52 |
| BshFI | GGCC | 6 cut(s) | 32, 1052, 1140, 1481, 1575, 1610 |
| BshTI | ACCGGT | 1 cut(s) | 316 |
| BshVI | ATCGAT | 1 cut(s) | 103 |
| BsiSI | CCGG | 1 cut(s) | 317 |
| BslFI | GGGAC | 3 cut(s) | 164, 1220, 1295 |
| BslI | CCNNNNNNNGG | 3 cut(s) | 566, 1243, 1606 |
| BsmAI | GTCTC | 7 cut(s) | 255, 413, 583, 900, 1367, 1411, 1636 |
| BsmBI | CGTCTC | 1 cut(s) | 1411 |
| BsmFI | GGGAC | 3 cut(s) | 164, 1220, 1295 |
| BsmI | GAATGC | 1 cut(s) | 1323 |
| BsnI | GGCC | 6 cut(s) | 32, 1052, 1140, 1481, 1575, 1610 |
| Bsp119I | TTCGAA | 1 cut(s) | 122 |
| Bsp120I | GGGCCC | 1 cut(s) | 1050 |
| Bsp1286I | GDGCHC | 1 cut(s) | 1054 |
| Bsp143I | GATC | 8 cut(s) | 24, 40, 784, 1102, 1198, 1207, 1294, 1672 |
| BspACI | CCGC | 3 cut(s) | 824, 1048, 1597 |
| BspANI | GGCC | 6 cut(s) | 32, 1052, 1140, 1481, 1575, 1610 |
| BspCNI | CTCAG | 1 cut(s) | 228 |
| BspDI | ATCGAT | 1 cut(s) | 103 |
| BspHI | TCATGA | 2 cut(s) | 253, 838 |
| BspLI | GGNNCC | 3 cut(s) | 180, 1052, 1674 |
| BspMAI | CTGCAG | 1 cut(s) | 1207 |
| BspPI | GGATC | 7 cut(s) | 32, 48, 779, 1193, 1202, 1667, 1680 |
| BspT104I | TTCGAA | 1 cut(s) | 122 |
| BspTI | CTTAAG | 2 cut(s) | 719, 1577 |
| BsrFI | RCCGGY | 1 cut(s) | 316 |
| BsrI | ACTGG | 2 cut(s) | 880, 1573 |
| BssAI | RCCGGY | 1 cut(s) | 316 |
| BssECI | CCNNGG | 3 cut(s) | 692, 1211, 1470 |
| BssMI | GATC | 8 cut(s) | 24, 40, 784, 1102, 1198, 1207, 1294, 1672 |
| BssT1I | CCWWGG | 3 cut(s) | 692, 1211, 1470 |
| Bst2UI | CCWGG | 1 cut(s) | 6 |
| Bst4CI | ACNGT | 2 cut(s) | 484, 737 |
| Bst6I | CTCTTC | 2 cut(s) | 633, 1526 |
| BstAFI | CTTAAG | 2 cut(s) | 719, 1577 |
| BstBI | TTCGAA | 1 cut(s) | 122 |
| BstC8I | GCNNGC | 2 cut(s) | 431, 1050 |
| BstDEI | CTNAG | 9 cut(s) | 230, 236, 307, 387, 539, 546, 874, 1038, 1117 |
| BstF5I | GGATG | 2 cut(s) | 229, 249 |
| BstKTI | GATC | 8 cut(s) | 27, 43, 787, 1105, 1201, 1210, 1297, 1675 |
| BstMAI | GTCTC | 7 cut(s) | 255, 413, 583, 900, 1367, 1411, 1636 |
| BstMBI | GATC | 8 cut(s) | 24, 40, 784, 1102, 1198, 1207, 1294, 1672 |
| BstMWI | GCNNNNNNNGC | 1 cut(s) | 1588 |
| BstNI | CCWGG | 1 cut(s) | 6 |
| BstSCI | CCNGG | 1 cut(s) | 4 |
| BstSFI | CTRYAG | 2 cut(s) | 978, 1203 |
| BstSLI | GKGCMC | 1 cut(s) | 1054 |
| BstV1I | GCAGC | 5 cut(s) | 378, 378, 606, 1486, 1569 |
| BstV2I | GAAGAC | 4 cut(s) | 514, 764, 1430, 1452 |
| BstX2I | RGATCY | 4 cut(s) | 40, 1198, 1207, 1672 |
| BstXI | CCANNNNNNTGG | 1 cut(s) | 519 |
| BstYI | RGATCY | 4 cut(s) | 40, 1198, 1207, 1672 |
| Bsu15I | ATCGAT | 1 cut(s) | 103 |
| Bsu36I | CCTNAGG | 1 cut(s) | 230 |
| BsuRI | GGCC | 6 cut(s) | 32, 1052, 1140, 1481, 1575, 1610 |
| BsuTUI | ATCGAT | 1 cut(s) | 103 |
| BtsCI | GGATG | 2 cut(s) | 229, 249 |
| BtsIMutI | CAGTG | 1 cut(s) | 633 |
| Cac8I | GCNNGC | 2 cut(s) | 431, 1050 |
| CciI | TCATGA | 2 cut(s) | 253, 838 |
| Cfr10I | RCCGGY | 1 cut(s) | 316 |
| Cfr13I | GGNCC | 6 cut(s) | 31, 89, 178, 830, 1050, 1051 |
| ClaI | ATCGAT | 1 cut(s) | 103 |
| CseI | GACGC | 1 cut(s) | 1580 |
| Csp6I | GTAC | 4 cut(s) | 473, 553, 697, 1566 |
| CspAI | ACCGGT | 1 cut(s) | 316 |
| CviAII | CATG | 4 cut(s) | 254, 263, 839, 1142 |
| CviQI | GTAC | 4 cut(s) | 473, 553, 697, 1566 |
| DdeI | CTNAG | 9 cut(s) | 230, 236, 307, 387, 539, 546, 874, 1038, 1117 |
| DpnI | GATC | 8 cut(s) | 26, 42, 786, 1104, 1200, 1209, 1296, 1674 |
| DpnII | GATC | 8 cut(s) | 24, 40, 784, 1102, 1198, 1207, 1294, 1672 |
| DrdI | GACNNNNNNGTC | 1 cut(s) | 1432 |
| DseDI | GACNNNNNNGTC | 1 cut(s) | 1432 |
| EaeI | YGGCCR | 1 cut(s) | 1608 |
| Eam1104I | CTCTTC | 2 cut(s) | 633, 1526 |
| EarI | CTCTTC | 2 cut(s) | 633, 1526 |
| Eco130I | CCWWGG | 3 cut(s) | 692, 1211, 1470 |
| Eco147I | AGGCCT | 1 cut(s) | 1481 |
| Eco24I | GRGCYC | 1 cut(s) | 1054 |
| Eco47I | GGWCC | 3 cut(s) | 89, 178, 830 |
| Eco57I | CTGAAG | 2 cut(s) | 657, 960 |
| Eco81I | CCTNAGG | 1 cut(s) | 230 |
| EcoO109I | RGGNCCY | 2 cut(s) | 178, 1051 |
| EcoRII | CCWGG | 1 cut(s) | 4 |
| EcoT14I | CCWWGG | 3 cut(s) | 692, 1211, 1470 |
| EcoT38I | GRGCYC | 1 cut(s) | 1054 |
| ErhI | CCWWGG | 3 cut(s) | 692, 1211, 1470 |
| Esp3I | CGTCTC | 1 cut(s) | 1411 |
| FaeI | CATG | 4 cut(s) | 257, 266, 842, 1145 |
| FaqI | GGGAC | 3 cut(s) | 164, 1220, 1295 |
| FatI | CATG | 4 cut(s) | 253, 262, 838, 1141 |
| FauI | CCCGC | 1 cut(s) | 1041 |
| FauNDI | CATATG | 1 cut(s) | 666 |
| FbaI | TGATCA | 1 cut(s) | 1294 |
| Fnu4HI | GCNGC | 5 cut(s) | 367, 392, 595, 1500, 1583 |
| FokI | GGATG | 2 cut(s) | 236, 256 |
| FriOI | GRGCYC | 1 cut(s) | 1054 |
| Fsp4HI | GCNGC | 5 cut(s) | 367, 392, 595, 1500, 1583 |
| GluI | GCNGC | 5 cut(s) | 367, 392, 595, 1500, 1583 |
| GsaI | CCCAGC | 1 cut(s) | 56 |
| HaeIII | GGCC | 6 cut(s) | 32, 1052, 1140, 1481, 1575, 1610 |
| HapII | CCGG | 1 cut(s) | 317 |
| HgaI | GACGC | 1 cut(s) | 1580 |
| Hin1II | CATG | 4 cut(s) | 257, 266, 842, 1145 |
| HinfI | GANTC | 3 cut(s) | 124, 1233, 1630 |
| HpaII | CCGG | 1 cut(s) | 317 |
| HphI | GGTGA | 5 cut(s) | 766, 1018, 1105, 1289, 1586 |
| Hpy166II | GTNNAC | 3 cut(s) | 487, 928, 1099 |
| Hpy188I | TCNGA | 7 cut(s) | 93, 129, 338, 647, 805, 915, 1635 |
| Hpy188III | TCNNGA | 4 cut(s) | 83, 254, 839, 899 |
| Hpy8I | GTNNAC | 3 cut(s) | 487, 928, 1099 |
| HpyAV | CCTTC | 3 cut(s) | 169, 462, 821 |
| HpyCH4III | ACNGT | 2 cut(s) | 484, 737 |
| HpyF10VI | GCNNNNNNNGC | 1 cut(s) | 1588 |
| HpyF3I | CTNAG | 9 cut(s) | 230, 236, 307, 387, 539, 546, 874, 1038, 1117 |
| Hsp92II | CATG | 4 cut(s) | 257, 266, 842, 1145 |
| Ksp22I | TGATCA | 1 cut(s) | 1294 |
| Kzo9I | GATC | 8 cut(s) | 24, 40, 784, 1102, 1198, 1207, 1294, 1672 |
| LmnI | GCTCC | 2 cut(s) | 683, 1024 |
| Lsp1109I | GCAGC | 5 cut(s) | 378, 378, 606, 1486, 1569 |
| LweI | GCATC | 2 cut(s) | 622, 1684 |
| MaeIII | GTNAC | 2 cut(s) | 1352, 1592 |
| MalI | GATC | 8 cut(s) | 26, 42, 786, 1104, 1200, 1209, 1296, 1674 |
| MboI | GATC | 8 cut(s) | 24, 40, 784, 1102, 1198, 1207, 1294, 1672 |
| MboII | GAAGA | 8 cut(s) | 154, 519, 650, 769, 1435, 1452, 1531, 1543 |
| MflI | RGATCY | 4 cut(s) | 40, 1198, 1207, 1672 |
| MhlI | GDGCHC | 1 cut(s) | 1054 |
| MlsI | TGGCCA | 1 cut(s) | 1610 |
| MluCI | AATT | 8 cut(s) | 399, 523, 851, 867, 1017, 1123, 1182, 1492 |
| MluNI | TGGCCA | 1 cut(s) | 1610 |
| MlyI | GAGTC | 1 cut(s) | 1242 |
| MmeI | TCCRAC | 1 cut(s) | 484 |
| Mox20I | TGGCCA | 1 cut(s) | 1610 |
| MscI | TGGCCA | 1 cut(s) | 1610 |
| MseI | TTAA | 7 cut(s) | 269, 402, 720, 1059, 1229, 1308, 1578 |
| MslI | CAYNNNNRTG | 3 cut(s) | 618, 1118, 1146 |
| Msp20I | TGGCCA | 1 cut(s) | 1610 |
| MspCI | CTTAAG | 2 cut(s) | 719, 1577 |
| MspI | CCGG | 1 cut(s) | 317 |
| MspR9I | CCNGG | 1 cut(s) | 6 |
| Mva1269I | GAATGC | 1 cut(s) | 1323 |
| MvaI | CCWGG | 1 cut(s) | 6 |
| MwoI | GCNNNNNNNGC | 1 cut(s) | 1588 |
| NdeI | CATATG | 1 cut(s) | 666 |
| NdeII | GATC | 8 cut(s) | 24, 40, 784, 1102, 1198, 1207, 1294, 1672 |
| NlaIII | CATG | 4 cut(s) | 257, 266, 842, 1145 |
| NlaIV | GGNNCC | 3 cut(s) | 180, 1052, 1674 |
| NmuCI | GTSAC | 1 cut(s) | 1592 |
| NspV | TTCGAA | 1 cut(s) | 122 |
| OliI | CACNNNNGTG | 1 cut(s) | 1118 |
| PagI | TCATGA | 2 cut(s) | 253, 838 |
| PceI | AGGCCT | 1 cut(s) | 1481 |
| PctI | GAATGC | 1 cut(s) | 1323 |
| PfeI | GAWTC | 2 cut(s) | 124, 1630 |
| PflFI | GACNNNGTC | 2 cut(s) | 834, 875 |
| PinAI | ACCGGT | 1 cut(s) | 316 |
| PkrI | GCNGC | 5 cut(s) | 368, 393, 596, 1501, 1584 |
| PleI | GAGTC | 1 cut(s) | 1241 |
| PpsI | GAGTC | 1 cut(s) | 1241 |
| PpuMI | RGGWCCY | 1 cut(s) | 178 |
| Psp5II | RGGWCCY | 1 cut(s) | 178 |
| Psp6I | CCWGG | 1 cut(s) | 4 |
| PspFI | CCCAGC | 1 cut(s) | 52 |
| PspGI | CCWGG | 1 cut(s) | 4 |
| PspN4I | GGNNCC | 3 cut(s) | 180, 1052, 1674 |
| PspOMI | GGGCCC | 1 cut(s) | 1050 |
| PspPI | GGNCC | 6 cut(s) | 31, 89, 178, 830, 1050, 1051 |
| PspPPI | RGGWCCY | 1 cut(s) | 178 |
| PstI | CTGCAG | 1 cut(s) | 1207 |
| PsuI | RGATCY | 4 cut(s) | 40, 1198, 1207, 1672 |
| PsyI | GACNNNGTC | 2 cut(s) | 834, 875 |
| RsaI | GTAC | 4 cut(s) | 474, 554, 698, 1567 |
| RsaNI | GTAC | 4 cut(s) | 473, 553, 697, 1566 |
| RseI | CAYNNNNRTG | 3 cut(s) | 618, 1118, 1146 |
| SaqAI | TTAA | 7 cut(s) | 269, 402, 720, 1059, 1229, 1308, 1578 |
| SatI | GCNGC | 5 cut(s) | 367, 392, 595, 1500, 1583 |
| Sau3AI | GATC | 8 cut(s) | 24, 40, 784, 1102, 1198, 1207, 1294, 1672 |
| Sau96I | GGNCC | 6 cut(s) | 31, 89, 178, 830, 1050, 1051 |
| SchI | GAGTC | 1 cut(s) | 1242 |
| ScrFI | CCNGG | 1 cut(s) | 6 |
| SduI | GDGCHC | 1 cut(s) | 1054 |
| SfaNI | GCATC | 2 cut(s) | 622, 1684 |
| SfcI | CTRYAG | 2 cut(s) | 978, 1203 |
| SfuI | TTCGAA | 1 cut(s) | 122 |
| SinI | GGWCC | 3 cut(s) | 89, 178, 830 |
| SmiMI | CAYNNNNRTG | 3 cut(s) | 618, 1118, 1146 |
| SmlI | CTYRAG | 4 cut(s) | 434, 719, 1577, 1586 |
| SmoI | CTYRAG | 4 cut(s) | 434, 719, 1577, 1586 |
| Sse9I | AATT | 8 cut(s) | 399, 523, 851, 867, 1017, 1123, 1182, 1492 |
| SseBI | AGGCCT | 1 cut(s) | 1481 |
| SsiI | CCGC | 3 cut(s) | 824, 1048, 1597 |
| StuI | AGGCCT | 1 cut(s) | 1481 |
| StyD4I | CCNGG | 1 cut(s) | 4 |
| StyI | CCWWGG | 3 cut(s) | 692, 1211, 1470 |
| TaaI | ACNGT | 2 cut(s) | 484, 737 |
| TaqI | TCGA | 4 cut(s) | 103, 122, 660, 1454 |
| TasI | AATT | 8 cut(s) | 399, 523, 851, 867, 1017, 1123, 1182, 1492 |
| TatI | WGTACW | 2 cut(s) | 552, 1565 |
| TfiI | GAWTC | 2 cut(s) | 124, 1630 |
| Tru1I | TTAA | 7 cut(s) | 269, 402, 720, 1059, 1229, 1308, 1578 |
| Tru9I | TTAA | 7 cut(s) | 269, 402, 720, 1059, 1229, 1308, 1578 |
| TscAI | CASTG | 1 cut(s) | 640 |
| TseFI | GTSAC | 1 cut(s) | 1592 |
| TseI | GCWGC | 5 cut(s) | 366, 391, 594, 1499, 1582 |
| Tsp45I | GTSAC | 1 cut(s) | 1592 |
| TspDTI | ATGAA | 7 cut(s) | 188, 194, 260, 444, 729, 855, 1029 |
| TspRI | CASTG | 1 cut(s) | 640 |
| Tth111I | GACNNNGTC | 2 cut(s) | 834, 875 |
| Vha464I | CTTAAG | 2 cut(s) | 719, 1577 |
| VpaK11BI | GGWCC | 3 cut(s) | 89, 178, 830 |
| XapI | RAATTY | 5 cut(s) | 851, 1017, 1123, 1182, 1492 |
| XmaJI | CCTAGG | 1 cut(s) | 1211 |