Transcription factor
| Domain Name | Pfam ID | Position | E-value | Description |
|---|---|---|---|---|
| Transposase_21 | PF02992 | 1 - 118 | 1.5e-27 | Transposase family tnp2 |
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| Enzyme | Recognition Site | Cut Count | Positions (bp) |
|---|---|---|---|
| AasI | GACNNNNNNGTC | 1 cut(s) | 704 |
| AccI | GTMKAC | 1 cut(s) | 708 |
| AccII | CGCG | 1 cut(s) | 428 |
| AciI | CCGC | 2 cut(s) | 123, 492 |
| AclI | AACGTT | 1 cut(s) | 147 |
| AcoI | YGGCCR | 1 cut(s) | 583 |
| AcsI | RAATTY | 2 cut(s) | 336, 597 |
| AfaI | GTAC | 4 cut(s) | 29, 65, 348, 681 |
| AfiI | CCNNNNNNNGG | 1 cut(s) | 129 |
| AflII | CTTAAG | 1 cut(s) | 23 |
| AflIII | ACRYGT | 1 cut(s) | 426 |
| AgsI | TTSAA | 2 cut(s) | 311, 455 |
| AjnI | CCWGG | 1 cut(s) | 580 |
| AjuI | GAANNNNNNNTTGG | 2 cut(s) | 348, 380 |
| AluBI | AGCT | 3 cut(s) | 22, 373, 407 |
| AluI | AGCT | 3 cut(s) | 22, 373, 407 |
| Alw26I | GTCTC | 1 cut(s) | 193 |
| Ama87I | CYCGRG | 1 cut(s) | 712 |
| AoxI | GGCC | 2 cut(s) | 578, 583 |
| ApeKI | GCWGC | 2 cut(s) | 370, 473 |
| ApoI | RAATTY | 2 cut(s) | 336, 597 |
| ArsI | GACNNNNNNTTYG | 2 cut(s) | 266, 298 |
| AsuHPI | GGTGA | 1 cut(s) | 224 |
| AsuII | TTCGAA | 1 cut(s) | 595 |
| AvaI | CYCGRG | 1 cut(s) | 712 |
| BauI | CACGAG | 1 cut(s) | 71 |
| BbvI | GCAGC | 2 cut(s) | 382, 460 |
| BccI | CCATC | 3 cut(s) | 281, 315, 542 |
| BceAI | ACGGC | 1 cut(s) | 570 |
| BciT130I | CCWGG | 1 cut(s) | 582 |
| BciVI | GTATCC | 1 cut(s) | 152 |
| BclI | TGATCA | 1 cut(s) | 253 |
| BcoDI | GTCTC | 1 cut(s) | 193 |
| BfaI | CTAG | 1 cut(s) | 32 |
| BfrI | CTTAAG | 1 cut(s) | 23 |
| BfuI | GTATCC | 1 cut(s) | 152 |
| BisI | GCNGC | 2 cut(s) | 371, 474 |
| BlpI | GCTNAGC | 1 cut(s) | 374 |
| BlsI | GCNGC | 2 cut(s) | 372, 475 |
| BmcAI | AGTACT | 1 cut(s) | 348 |
| Bme1390I | CCNGG | 1 cut(s) | 582 |
| BmeT110I | CYCGRG | 1 cut(s) | 712 |
| BmrFI | CCNGG | 1 cut(s) | 582 |
| BmsI | GCATC | 2 cut(s) | 123, 216 |
| Bpu1102I | GCTNAGC | 1 cut(s) | 374 |
| Bpu14I | TTCGAA | 1 cut(s) | 595 |
| BsaBI | GATNNNNATC | 2 cut(s) | 630, 666 |
| BsaJI | CCNNGG | 2 cut(s) | 260, 314 |
| BsaXI | ACNNNNNCTCC | 2 cut(s) | 11, 41 |
| Bsc4I | CCNNNNNNNGG | 1 cut(s) | 129 |
| Bse3DI | GCAATG | 1 cut(s) | 205 |
| Bse8I | GATNNNNATC | 2 cut(s) | 630, 666 |
| BseBI | CCWGG | 1 cut(s) | 582 |
| BseDI | CCNNGG | 2 cut(s) | 260, 314 |
| BseGI | GGATG | 6 cut(s) | 46, 138, 231, 256, 310, 382 |
| BseJI | GATNNNNATC | 2 cut(s) | 630, 666 |
| BseLI | CCNNNNNNNGG | 1 cut(s) | 129 |
| BseMI | GCAATG | 1 cut(s) | 205 |
| BseRI | GAGGAG | 2 cut(s) | 32, 331 |
| BseXI | GCAGC | 2 cut(s) | 382, 460 |
| Bsh1236I | CGCG | 1 cut(s) | 428 |
| Bsh1285I | CGRYCG | 1 cut(s) | 670 |
| BshFI | GGCC | 2 cut(s) | 580, 585 |
| BsiEI | CGRYCG | 1 cut(s) | 670 |
| BsiHKCI | CYCGRG | 1 cut(s) | 712 |
| BslFI | GGGAC | 1 cut(s) | 304 |
| BslI | CCNNNNNNNGG | 1 cut(s) | 129 |
| BsmAI | GTCTC | 1 cut(s) | 193 |
| BsmFI | GGGAC | 1 cut(s) | 304 |
| BsmI | GAATGC | 1 cut(s) | 535 |
| BsnI | GGCC | 2 cut(s) | 580, 585 |
| BsoBI | CYCGRG | 1 cut(s) | 712 |
| Bsp119I | TTCGAA | 1 cut(s) | 595 |
| Bsp143I | GATC | 3 cut(s) | 253, 631, 667 |
| Bsp1720I | GCTNAGC | 1 cut(s) | 374 |
| Bsp19I | CCATGG | 1 cut(s) | 260 |
| BspACI | CCGC | 2 cut(s) | 123, 492 |
| BspANI | GGCC | 2 cut(s) | 580, 585 |
| BspFNI | CGCG | 1 cut(s) | 428 |
| BspT104I | TTCGAA | 1 cut(s) | 595 |
| BspTI | CTTAAG | 1 cut(s) | 23 |
| BsrDI | GCAATG | 1 cut(s) | 205 |
| BssECI | CCNNGG | 2 cut(s) | 260, 314 |
| BssMI | GATC | 3 cut(s) | 253, 631, 667 |
| BssSI | CACGAG | 1 cut(s) | 71 |
| BssT1I | CCWWGG | 1 cut(s) | 260 |
| Bst2BI | CACGAG | 1 cut(s) | 71 |
| Bst2UI | CCWGG | 1 cut(s) | 582 |
| Bst4CI | ACNGT | 2 cut(s) | 236, 295 |
| BstAFI | CTTAAG | 1 cut(s) | 23 |
| BstBI | TTCGAA | 1 cut(s) | 595 |
| BstC8I | GCNNGC | 1 cut(s) | 127 |
| BstDEI | CTNAG | 1 cut(s) | 374 |
| BstDSI | CCRYGG | 1 cut(s) | 260 |
| BstF5I | GGATG | 6 cut(s) | 46, 138, 231, 256, 310, 382 |
| BstFNI | CGCG | 1 cut(s) | 428 |
| BstKTI | GATC | 3 cut(s) | 256, 634, 670 |
| BstMAI | GTCTC | 1 cut(s) | 193 |
| BstMBI | GATC | 3 cut(s) | 253, 631, 667 |
| BstMCI | CGRYCG | 1 cut(s) | 670 |
| BstMWI | GCNNNNNNNGC | 1 cut(s) | 404 |
| BstNI | CCWGG | 1 cut(s) | 582 |
| BstSCI | CCNGG | 1 cut(s) | 580 |
| BstUI | CGCG | 1 cut(s) | 428 |
| BstV1I | GCAGC | 2 cut(s) | 382, 460 |
| BstXI | CCANNNNNNTGG | 1 cut(s) | 394 |
| BsuI | GTATCC | 1 cut(s) | 152 |
| BsuRI | GGCC | 2 cut(s) | 580, 585 |
| BtgI | CCRYGG | 1 cut(s) | 260 |
| BtsCI | GGATG | 6 cut(s) | 46, 138, 231, 256, 310, 382 |
| Cac8I | GCNNGC | 1 cut(s) | 127 |
| CseI | GACGC | 2 cut(s) | 218, 434 |
| Csp6I | GTAC | 4 cut(s) | 28, 64, 347, 680 |
| CviAII | CATG | 2 cut(s) | 261, 446 |
| CviQI | GTAC | 4 cut(s) | 28, 64, 347, 680 |
| DdeI | CTNAG | 1 cut(s) | 374 |
| DpnI | GATC | 3 cut(s) | 255, 633, 669 |
| DpnII | GATC | 3 cut(s) | 253, 631, 667 |
| DrdI | GACNNNNNNGTC | 1 cut(s) | 704 |
| DseDI | GACNNNNNNGTC | 1 cut(s) | 704 |
| EaeI | YGGCCR | 1 cut(s) | 583 |
| Eco130I | CCWWGG | 1 cut(s) | 260 |
| Eco147I | AGGCCT | 1 cut(s) | 580 |
| Eco88I | CYCGRG | 1 cut(s) | 712 |
| EcoRI | GAATTC | 1 cut(s) | 597 |
| EcoRII | CCWGG | 1 cut(s) | 580 |
| EcoT14I | CCWWGG | 1 cut(s) | 260 |
| ErhI | CCWWGG | 1 cut(s) | 260 |
| FaeI | CATG | 2 cut(s) | 264, 449 |
| FaqI | GGGAC | 1 cut(s) | 304 |
| FatI | CATG | 2 cut(s) | 260, 445 |
| FauI | CCCGC | 1 cut(s) | 130 |
| FauNDI | CATATG | 1 cut(s) | 55 |
| FbaI | TGATCA | 1 cut(s) | 253 |
| FblI | GTMKAC | 1 cut(s) | 708 |
| Fnu4HI | GCNGC | 2 cut(s) | 371, 474 |
| FokI | GGATG | 6 cut(s) | 33, 145, 238, 243, 317, 369 |
| Fsp4HI | GCNGC | 2 cut(s) | 371, 474 |
| FspBI | CTAG | 1 cut(s) | 32 |
| GluI | GCNGC | 2 cut(s) | 371, 474 |
| HaeIII | GGCC | 2 cut(s) | 580, 585 |
| HgaI | GACGC | 2 cut(s) | 218, 434 |
| Hin1II | CATG | 2 cut(s) | 264, 449 |
| HincII | GTYRAC | 2 cut(s) | 442, 709 |
| HindII | GTYRAC | 2 cut(s) | 442, 709 |
| HinfI | GANTC | 4 cut(s) | 548, 653, 710, 722 |
| HphI | GGTGA | 1 cut(s) | 224 |
| Hpy166II | GTNNAC | 2 cut(s) | 442, 709 |
| Hpy188I | TCNGA | 5 cut(s) | 84, 636, 658, 697, 727 |
| Hpy188III | TCNNGA | 6 cut(s) | 71, 173, 223, 545, 602, 650 |
| Hpy8I | GTNNAC | 2 cut(s) | 442, 709 |
| Hpy99I | CGWCG | 1 cut(s) | 611 |
| HpyCH4III | ACNGT | 2 cut(s) | 236, 295 |
| HpyCH4IV | ACGT | 1 cut(s) | 147 |
| HpyCH4V | TGCA | 1 cut(s) | 210 |
| HpyF10VI | GCNNNNNNNGC | 1 cut(s) | 404 |
| HpyF3I | CTNAG | 1 cut(s) | 374 |
| HpySE526I | ACGT | 1 cut(s) | 147 |
| Hsp92II | CATG | 2 cut(s) | 264, 449 |
| Ksp22I | TGATCA | 1 cut(s) | 253 |
| Kzo9I | GATC | 3 cut(s) | 253, 631, 667 |
| LmnI | GCTCC | 1 cut(s) | 19 |
| Lsp1109I | GCAGC | 2 cut(s) | 382, 460 |
| LweI | GCATC | 2 cut(s) | 123, 216 |
| MaeI | CTAG | 1 cut(s) | 32 |
| MaeII | ACGT | 1 cut(s) | 147 |
| MaeIII | GTNAC | 3 cut(s) | 143, 230, 602 |
| MalI | GATC | 3 cut(s) | 255, 633, 669 |
| MboI | GATC | 3 cut(s) | 253, 631, 667 |
| MboII | GAAGA | 4 cut(s) | 226, 515, 518, 671 |
| MluCI | AATT | 4 cut(s) | 336, 558, 597, 691 |
| MluI | ACGCGT | 1 cut(s) | 426 |
| MlyI | GAGTC | 1 cut(s) | 704 |
| MmeI | TCCRAC | 1 cut(s) | 22 |
| MnlI | CCTC | 3 cut(s) | 10, 309, 562 |
| MseI | TTAA | 5 cut(s) | 24, 153, 567, 690, 739 |
| MspCI | CTTAAG | 1 cut(s) | 23 |
| MspR9I | CCNGG | 1 cut(s) | 582 |
| Mva1269I | GAATGC | 1 cut(s) | 535 |
| MvaI | CCWGG | 1 cut(s) | 582 |
| MvnI | CGCG | 1 cut(s) | 428 |
| MwoI | GCNNNNNNNGC | 1 cut(s) | 404 |
| NcoI | CCATGG | 1 cut(s) | 260 |
| NdeI | CATATG | 1 cut(s) | 55 |
| NdeII | GATC | 3 cut(s) | 253, 631, 667 |
| NlaIII | CATG | 2 cut(s) | 264, 449 |
| NmuCI | GTSAC | 2 cut(s) | 230, 602 |
| NspV | TTCGAA | 1 cut(s) | 595 |
| PaeR7I | CTCGAG | 1 cut(s) | 712 |
| PceI | AGGCCT | 1 cut(s) | 580 |
| PctI | GAATGC | 1 cut(s) | 535 |
| PfeI | GAWTC | 3 cut(s) | 548, 653, 722 |
| PkrI | GCNGC | 2 cut(s) | 372, 475 |
| Ple19I | CGATCG | 1 cut(s) | 670 |
| PleI | GAGTC | 1 cut(s) | 704 |
| PpsI | GAGTC | 1 cut(s) | 704 |
| Psp1406I | AACGTT | 1 cut(s) | 147 |
| Psp6I | CCWGG | 1 cut(s) | 580 |
| PspGI | CCWGG | 1 cut(s) | 580 |
| PspXI | VCTCGAGB | 1 cut(s) | 712 |
| PvuI | CGATCG | 1 cut(s) | 670 |
| RsaI | GTAC | 4 cut(s) | 29, 65, 348, 681 |
| RsaNI | GTAC | 4 cut(s) | 28, 64, 347, 680 |
| SalI | GTCGAC | 1 cut(s) | 707 |
| SaqAI | TTAA | 5 cut(s) | 24, 153, 567, 690, 739 |
| SatI | GCNGC | 2 cut(s) | 371, 474 |
| Sau3AI | GATC | 3 cut(s) | 253, 631, 667 |
| ScaI | AGTACT | 1 cut(s) | 348 |
| SchI | GAGTC | 1 cut(s) | 704 |
| ScrFI | CCNGG | 1 cut(s) | 582 |
| SetI | ASST | 6 cut(s) | 24, 33, 150, 375, 409, 739 |
| SfaNI | GCATC | 2 cut(s) | 123, 216 |
| Sfr274I | CTCGAG | 1 cut(s) | 712 |
| SfuI | TTCGAA | 1 cut(s) | 595 |
| SlaI | CTCGAG | 1 cut(s) | 712 |
| SmlI | CTYRAG | 2 cut(s) | 23, 712 |
| SmoI | CTYRAG | 2 cut(s) | 23, 712 |
| Sse9I | AATT | 4 cut(s) | 336, 558, 597, 691 |
| SseBI | AGGCCT | 1 cut(s) | 580 |
| SsiI | CCGC | 2 cut(s) | 123, 492 |
| SspMI | CTAG | 1 cut(s) | 32 |
| StuI | AGGCCT | 1 cut(s) | 580 |
| StyD4I | CCNGG | 1 cut(s) | 580 |
| StyI | CCWWGG | 1 cut(s) | 260 |
| TaaI | ACNGT | 2 cut(s) | 236, 295 |
| TaiI | ACGT | 1 cut(s) | 150 |
| TaqI | TCGA | 3 cut(s) | 595, 708, 713 |
| TasI | AATT | 4 cut(s) | 336, 558, 597, 691 |
| TatI | WGTACW | 2 cut(s) | 63, 346 |
| TfiI | GAWTC | 3 cut(s) | 548, 653, 722 |
| Tru1I | TTAA | 5 cut(s) | 24, 153, 567, 690, 739 |
| Tru9I | TTAA | 5 cut(s) | 24, 153, 567, 690, 739 |
| TseFI | GTSAC | 2 cut(s) | 230, 602 |
| TseI | GCWGC | 2 cut(s) | 370, 473 |
| Tsp45I | GTSAC | 2 cut(s) | 230, 602 |
| TspDTI | ATGAA | 5 cut(s) | 51, 194, 348, 369, 516 |
| Vha464I | CTTAAG | 1 cut(s) | 23 |
| XapI | RAATTY | 2 cut(s) | 336, 597 |
| XhoI | CTCGAG | 1 cut(s) | 712 |
| XmiI | GTMKAC | 1 cut(s) | 708 |
| XspI | CTAG | 1 cut(s) | 32 |
| ZrmI | AGTACT | 1 cut(s) | 348 |