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| Enzyme | Recognition Site | Cut Count | Positions (bp) |
|---|---|---|---|
| AccBSI | CCGCTC | 2 cut(s) | 201, 694 |
| AciI | CCGC | 3 cut(s) | 107, 201, 694 |
| AclWI | GGATC | 2 cut(s) | 511, 554 |
| AcoI | YGGCCR | 1 cut(s) | 118 |
| AcuI | CTGAAG | 1 cut(s) | 59 |
| AfaI | GTAC | 8 cut(s) | 65, 142, 148, 284, 320, 422, 660, 701 |
| AfiI | CCNNNNNNNGG | 2 cut(s) | 55, 679 |
| AflIII | ACRYGT | 3 cut(s) | 68, 183, 702 |
| AgeI | ACCGGT | 1 cut(s) | 48 |
| AgsI | TTSAA | 2 cut(s) | 305, 347 |
| AluBI | AGCT | 2 cut(s) | 257, 625 |
| AluI | AGCT | 2 cut(s) | 257, 625 |
| Alw26I | GTCTC | 2 cut(s) | 125, 374 |
| AlwI | GGATC | 2 cut(s) | 511, 554 |
| AlwNI | CAGNNNCTG | 1 cut(s) | 37 |
| AoxI | GGCC | 3 cut(s) | 118, 168, 583 |
| ApeKI | GCWGC | 3 cut(s) | 31, 241, 436 |
| AsiGI | ACCGGT | 1 cut(s) | 48 |
| AspLEI | GCGC | 1 cut(s) | 212 |
| AspS9I | GGNCC | 2 cut(s) | 104, 475 |
| AsuC2I | CCSGG | 2 cut(s) | 236, 324 |
| AsuHPI | GGTGA | 1 cut(s) | 98 |
| AvaII | GGWCC | 2 cut(s) | 104, 475 |
| BaeI | ACNNNNGTAYC | 2 cut(s) | 650, 683 |
| BalI | TGGCCA | 1 cut(s) | 120 |
| BbsI | GAAGAC | 2 cut(s) | 404, 699 |
| BbvI | GCAGC | 3 cut(s) | 43, 253, 423 |
| BccI | CCATC | 1 cut(s) | 349 |
| BceAI | ACGGC | 2 cut(s) | 183, 732 |
| BciVI | GTATCC | 1 cut(s) | 494 |
| BclI | TGATCA | 1 cut(s) | 112 |
| BcnI | CCSGG | 2 cut(s) | 236, 324 |
| BcoDI | GTCTC | 2 cut(s) | 125, 374 |
| BfaI | CTAG | 1 cut(s) | 689 |
| BfmI | CTRYAG | 2 cut(s) | 416, 633 |
| BfuI | GTATCC | 1 cut(s) | 494 |
| BglII | AGATCT | 1 cut(s) | 493 |
| BisI | GCNGC | 3 cut(s) | 32, 242, 437 |
| BlsI | GCNGC | 3 cut(s) | 33, 243, 438 |
| BmcAI | AGTACT | 1 cut(s) | 142 |
| Bme1390I | CCNGG | 2 cut(s) | 236, 324 |
| Bme18I | GGWCC | 2 cut(s) | 104, 475 |
| BmgT120I | GGNCC | 2 cut(s) | 104, 475 |
| BmiI | GGNNCC | 1 cut(s) | 105 |
| BmrFI | CCNGG | 2 cut(s) | 236, 324 |
| BmsI | GCATC | 2 cut(s) | 13, 423 |
| BpiI | GAAGAC | 2 cut(s) | 404, 699 |
| BpuEI | CTTGAG | 1 cut(s) | 198 |
| BpuMI | CCSGG | 2 cut(s) | 236, 324 |
| Bsa29I | ATCGAT | 1 cut(s) | 7 |
| BsaBI | GATNNNNATC | 1 cut(s) | 411 |
| BsaJI | CCNNGG | 3 cut(s) | 322, 442, 577 |
| BsaWI | WCCGGW | 1 cut(s) | 48 |
| Bsc4I | CCNNNNNNNGG | 2 cut(s) | 55, 679 |
| Bse118I | RCCGGY | 1 cut(s) | 48 |
| Bse8I | GATNNNNATC | 1 cut(s) | 411 |
| BseCI | ATCGAT | 1 cut(s) | 7 |
| BseDI | CCNNGG | 3 cut(s) | 322, 442, 577 |
| BseGI | GGATG | 1 cut(s) | 149 |
| BseJI | GATNNNNATC | 1 cut(s) | 411 |
| BseLI | CCNNNNNNNGG | 2 cut(s) | 55, 679 |
| BseMII | CTCAG | 1 cut(s) | 120 |
| BseXI | GCAGC | 3 cut(s) | 43, 253, 423 |
| BsgI | GTGCAG | 1 cut(s) | 260 |
| BshFI | GGCC | 3 cut(s) | 120, 170, 585 |
| BshTI | ACCGGT | 1 cut(s) | 48 |
| BshVI | ATCGAT | 1 cut(s) | 7 |
| BsiSI | CCGG | 3 cut(s) | 49, 236, 324 |
| BslI | CCNNNNNNNGG | 2 cut(s) | 55, 679 |
| BsmAI | GTCTC | 2 cut(s) | 125, 374 |
| BsnI | GGCC | 3 cut(s) | 120, 170, 585 |
| Bsp1407I | TGTACA | 2 cut(s) | 146, 699 |
| Bsp143I | GATC | 6 cut(s) | 112, 157, 336, 493, 516, 559 |
| BspACI | CCGC | 3 cut(s) | 107, 201, 694 |
| BspANI | GGCC | 3 cut(s) | 120, 170, 585 |
| BspCNI | CTCAG | 1 cut(s) | 121 |
| BspDI | ATCGAT | 1 cut(s) | 7 |
| BspLI | GGNNCC | 1 cut(s) | 105 |
| BspMAI | CTGCAG | 1 cut(s) | 637 |
| BspPI | GGATC | 2 cut(s) | 511, 554 |
| BsrBI | CCGCTC | 2 cut(s) | 201, 694 |
| BsrFI | RCCGGY | 1 cut(s) | 48 |
| BsrGI | TGTACA | 2 cut(s) | 146, 699 |
| BssAI | RCCGGY | 1 cut(s) | 48 |
| BssECI | CCNNGG | 3 cut(s) | 322, 442, 577 |
| BssMI | GATC | 6 cut(s) | 112, 157, 336, 493, 516, 559 |
| BssT1I | CCWWGG | 1 cut(s) | 577 |
| Bst4CI | ACNGT | 7 cut(s) | 86, 222, 394, 403, 420, 427, 446 |
| Bst6I | CTCTTC | 2 cut(s) | 35, 551 |
| BstAUI | TGTACA | 2 cut(s) | 146, 699 |
| BstC8I | GCNNGC | 3 cut(s) | 297, 526, 637 |
| BstDEI | CTNAG | 1 cut(s) | 129 |
| BstDSI | CCRYGG | 1 cut(s) | 442 |
| BstF5I | GGATG | 1 cut(s) | 149 |
| BstHHI | GCGC | 1 cut(s) | 212 |
| BstKTI | GATC | 6 cut(s) | 115, 160, 339, 496, 519, 562 |
| BstMAI | GTCTC | 2 cut(s) | 125, 374 |
| BstMBI | GATC | 6 cut(s) | 112, 157, 336, 493, 516, 559 |
| BstMWI | GCNNNNNNNGC | 1 cut(s) | 207 |
| BstNSI | RCATGY | 5 cut(s) | 72, 187, 528, 597, 706 |
| BstSCI | CCNGG | 2 cut(s) | 234, 322 |
| BstSFI | CTRYAG | 2 cut(s) | 416, 633 |
| BstV1I | GCAGC | 3 cut(s) | 43, 253, 423 |
| BstV2I | GAAGAC | 2 cut(s) | 404, 699 |
| BstX2I | RGATCY | 3 cut(s) | 493, 516, 559 |
| BstYI | RGATCY | 3 cut(s) | 493, 516, 559 |
| Bsu15I | ATCGAT | 1 cut(s) | 7 |
| BsuI | GTATCC | 1 cut(s) | 494 |
| BsuRI | GGCC | 3 cut(s) | 120, 170, 585 |
| BsuTUI | ATCGAT | 1 cut(s) | 7 |
| BtgI | CCRYGG | 1 cut(s) | 442 |
| BtsCI | GGATG | 1 cut(s) | 149 |
| BtsI | GCAGTG | 1 cut(s) | 264 |
| BtsIMutI | CAGTG | 2 cut(s) | 264, 423 |
| Cac8I | GCNNGC | 3 cut(s) | 297, 526, 637 |
| CaiI | CAGNNNCTG | 1 cut(s) | 37 |
| CfoI | GCGC | 1 cut(s) | 212 |
| Cfr10I | RCCGGY | 1 cut(s) | 48 |
| Cfr13I | GGNCC | 2 cut(s) | 104, 475 |
| ClaI | ATCGAT | 1 cut(s) | 7 |
| CseI | GACGC | 1 cut(s) | 599 |
| Csp6I | GTAC | 8 cut(s) | 64, 141, 147, 283, 319, 421, 659, 700 |
| CspAI | ACCGGT | 1 cut(s) | 48 |
| CviAII | CATG | 8 cut(s) | 69, 110, 116, 184, 521, 525, 594, 703 |
| CviJI | RGCY | 9 cut(s) | 120, 170, 244, 257, 502, 585, 625, 688, 719 |
| CviKI_1 | RGCY | 9 cut(s) | 120, 170, 244, 257, 502, 585, 625, 688, 719 |
| CviQI | GTAC | 8 cut(s) | 64, 141, 147, 283, 319, 421, 659, 700 |
| DdeI | CTNAG | 1 cut(s) | 129 |
| DpnI | GATC | 6 cut(s) | 114, 159, 338, 495, 518, 561 |
| DpnII | GATC | 6 cut(s) | 112, 157, 336, 493, 516, 559 |
| EaeI | YGGCCR | 1 cut(s) | 118 |
| Eam1104I | CTCTTC | 2 cut(s) | 35, 551 |
| EarI | CTCTTC | 2 cut(s) | 35, 551 |
| Eco130I | CCWWGG | 1 cut(s) | 577 |
| Eco47I | GGWCC | 2 cut(s) | 104, 475 |
| Eco57I | CTGAAG | 1 cut(s) | 59 |
| EcoT14I | CCWWGG | 1 cut(s) | 577 |
| EcoT22I | ATGCAT | 2 cut(s) | 6, 526 |
| ErhI | CCWWGG | 1 cut(s) | 577 |
| FaeI | CATG | 8 cut(s) | 72, 113, 119, 187, 524, 528, 597, 706 |
| FatI | CATG | 8 cut(s) | 68, 109, 115, 183, 520, 524, 593, 702 |
| FbaI | TGATCA | 1 cut(s) | 112 |
| Fnu4HI | GCNGC | 3 cut(s) | 32, 242, 437 |
| FokI | GGATG | 1 cut(s) | 136 |
| Fsp4HI | GCNGC | 3 cut(s) | 32, 242, 437 |
| FspBI | CTAG | 1 cut(s) | 689 |
| GlaI | GCGC | 1 cut(s) | 211 |
| GluI | GCNGC | 3 cut(s) | 32, 242, 437 |
| HaeIII | GGCC | 3 cut(s) | 120, 170, 585 |
| HapII | CCGG | 3 cut(s) | 49, 236, 324 |
| HgaI | GACGC | 1 cut(s) | 599 |
| HhaI | GCGC | 1 cut(s) | 212 |
| Hin1II | CATG | 8 cut(s) | 72, 113, 119, 187, 524, 528, 597, 706 |
| Hin6I | GCGC | 1 cut(s) | 210 |
| HinP1I | GCGC | 1 cut(s) | 210 |
| HincII | GTYRAC | 1 cut(s) | 262 |
| HindII | GTYRAC | 1 cut(s) | 262 |
| HinfI | GANTC | 2 cut(s) | 310, 628 |
| HpaII | CCGG | 3 cut(s) | 49, 236, 324 |
| HphI | GGTGA | 1 cut(s) | 98 |
| Hpy166II | GTNNAC | 4 cut(s) | 66, 262, 319, 423 |
| Hpy188I | TCNGA | 4 cut(s) | 15, 130, 333, 479 |
| Hpy188III | TCNNGA | 4 cut(s) | 344, 487, 514, 563 |
| Hpy8I | GTNNAC | 4 cut(s) | 66, 262, 319, 423 |
| HpyAV | CCTTC | 3 cut(s) | 181, 560, 649 |
| HpyCH4III | ACNGT | 7 cut(s) | 86, 222, 394, 403, 420, 427, 446 |
| HpyCH4IV | ACGT | 1 cut(s) | 360 |
| HpyCH4V | TGCA | 5 cut(s) | 4, 241, 524, 528, 635 |
| HpyF10VI | GCNNNNNNNGC | 1 cut(s) | 207 |
| HpyF3I | CTNAG | 1 cut(s) | 129 |
| HpySE526I | ACGT | 1 cut(s) | 360 |
| Hsp92II | CATG | 8 cut(s) | 72, 113, 119, 187, 524, 528, 597, 706 |
| HspAI | GCGC | 1 cut(s) | 210 |
| Ksp22I | TGATCA | 1 cut(s) | 112 |
| Kzo9I | GATC | 6 cut(s) | 112, 157, 336, 493, 516, 559 |
| Lsp1109I | GCAGC | 3 cut(s) | 43, 253, 423 |
| LweI | GCATC | 2 cut(s) | 13, 423 |
| MaeI | CTAG | 1 cut(s) | 689 |
| MaeII | ACGT | 1 cut(s) | 360 |
| MaeIII | GTNAC | 2 cut(s) | 44, 605 |
| MalI | GATC | 6 cut(s) | 114, 159, 338, 495, 518, 561 |
| MbiI | CCGCTC | 2 cut(s) | 201, 694 |
| MboI | GATC | 6 cut(s) | 112, 157, 336, 493, 516, 559 |
| MboII | GAAGA | 7 cut(s) | 52, 346, 379, 409, 446, 538, 699 |
| MflI | RGATCY | 3 cut(s) | 493, 516, 559 |
| MlsI | TGGCCA | 1 cut(s) | 120 |
| MluCI | AATT | 1 cut(s) | 122 |
| MluNI | TGGCCA | 1 cut(s) | 120 |
| MlyI | GAGTC | 2 cut(s) | 304, 622 |
| MnlI | CCTC | 1 cut(s) | 672 |
| Mox20I | TGGCCA | 1 cut(s) | 120 |
| Mph1103I | ATGCAT | 2 cut(s) | 6, 526 |
| MscI | TGGCCA | 1 cut(s) | 120 |
| MseI | TTAA | 1 cut(s) | 372 |
| MslI | CAYNNNNRTG | 2 cut(s) | 114, 614 |
| Msp20I | TGGCCA | 1 cut(s) | 120 |
| MspI | CCGG | 3 cut(s) | 49, 236, 324 |
| MspR9I | CCNGG | 2 cut(s) | 236, 324 |
| MwoI | GCNNNNNNNGC | 1 cut(s) | 207 |
| NciI | CCSGG | 2 cut(s) | 236, 324 |
| NdeII | GATC | 6 cut(s) | 112, 157, 336, 493, 516, 559 |
| NlaIII | CATG | 8 cut(s) | 72, 113, 119, 187, 524, 528, 597, 706 |
| NlaIV | GGNNCC | 1 cut(s) | 105 |
| NmuCI | GTSAC | 1 cut(s) | 605 |
| NsiI | ATGCAT | 2 cut(s) | 6, 526 |
| NspI | RCATGY | 5 cut(s) | 72, 187, 528, 597, 706 |
| PaeI | GCATGC | 1 cut(s) | 528 |
| PciI | ACATGT | 3 cut(s) | 68, 183, 702 |
| PinAI | ACCGGT | 1 cut(s) | 48 |
| PkrI | GCNGC | 3 cut(s) | 33, 243, 438 |
| PleI | GAGTC | 2 cut(s) | 304, 622 |
| PpsI | GAGTC | 2 cut(s) | 304, 622 |
| PscI | ACATGT | 3 cut(s) | 68, 183, 702 |
| PspN4I | GGNNCC | 1 cut(s) | 105 |
| PspPI | GGNCC | 2 cut(s) | 104, 475 |
| PstI | CTGCAG | 1 cut(s) | 637 |
| PstNI | CAGNNNCTG | 1 cut(s) | 37 |
| PsuI | RGATCY | 3 cut(s) | 493, 516, 559 |
| RsaI | GTAC | 8 cut(s) | 65, 142, 148, 284, 320, 422, 660, 701 |
| RsaNI | GTAC | 8 cut(s) | 64, 141, 147, 283, 319, 421, 659, 700 |
| RseI | CAYNNNNRTG | 2 cut(s) | 114, 614 |
| SaqAI | TTAA | 1 cut(s) | 372 |
| SatI | GCNGC | 3 cut(s) | 32, 242, 437 |
| Sau3AI | GATC | 6 cut(s) | 112, 157, 336, 493, 516, 559 |
| Sau96I | GGNCC | 2 cut(s) | 104, 475 |
| SbfI | CCTGCAGG | 1 cut(s) | 637 |
| ScaI | AGTACT | 1 cut(s) | 142 |
| SchI | GAGTC | 2 cut(s) | 304, 622 |
| ScrFI | CCNGG | 2 cut(s) | 236, 324 |
| SdaI | CCTGCAGG | 1 cut(s) | 637 |
| SetI | ASST | 8 cut(s) | 39, 259, 363, 477, 579, 627, 652, 660 |
| SfaNI | GCATC | 2 cut(s) | 13, 423 |
| SfcI | CTRYAG | 2 cut(s) | 416, 633 |
| SinI | GGWCC | 2 cut(s) | 104, 475 |
| SmiMI | CAYNNNNRTG | 2 cut(s) | 114, 614 |
| SmlI | CTYRAG | 1 cut(s) | 213 |
| SmoI | CTYRAG | 1 cut(s) | 213 |
| SphI | GCATGC | 1 cut(s) | 528 |
| Sse8387I | CCTGCAGG | 1 cut(s) | 637 |
| Sse9I | AATT | 1 cut(s) | 122 |
| SsiI | CCGC | 3 cut(s) | 107, 201, 694 |
| SspMI | CTAG | 1 cut(s) | 689 |
| StyD4I | CCNGG | 2 cut(s) | 234, 322 |
| StyI | CCWWGG | 1 cut(s) | 577 |
| TaaI | ACNGT | 7 cut(s) | 86, 222, 394, 403, 420, 427, 446 |
| TaiI | ACGT | 1 cut(s) | 363 |
| TaqI | TCGA | 2 cut(s) | 7, 431 |
| TasI | AATT | 1 cut(s) | 122 |
| TatI | WGTACW | 6 cut(s) | 63, 140, 146, 282, 420, 699 |
| Tru1I | TTAA | 1 cut(s) | 372 |
| Tru9I | TTAA | 1 cut(s) | 372 |
| TscAI | CASTG | 2 cut(s) | 271, 430 |
| TseFI | GTSAC | 1 cut(s) | 605 |
| TseI | GCWGC | 3 cut(s) | 31, 241, 436 |
| Tsp45I | GTSAC | 1 cut(s) | 605 |
| TspDTI | ATGAA | 2 cut(s) | 163, 380 |
| TspRI | CASTG | 2 cut(s) | 271, 430 |
| VpaK11BI | GGWCC | 2 cut(s) | 104, 475 |
| XceI | RCATGY | 5 cut(s) | 72, 187, 528, 597, 706 |
| XspI | CTAG | 1 cut(s) | 689 |
| ZrmI | AGTACT | 1 cut(s) | 142 |
| Zsp2I | ATGCAT | 2 cut(s) | 6, 526 |