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| Enzyme | Recognition Site | Cut Count | Positions (bp) |
|---|---|---|---|
| Acc36I | ACCTGC | 1 cut(s) | 390 |
| AclWI | GGATC | 3 cut(s) | 52, 65, 212 |
| AcsI | RAATTY | 2 cut(s) | 50, 133 |
| AgsI | TTSAA | 3 cut(s) | 104, 139, 272 |
| AloI | GAACNNNNNNTCC | 2 cut(s) | 84, 116 |
| AluBI | AGCT | 3 cut(s) | 6, 37, 359 |
| AluI | AGCT | 3 cut(s) | 6, 37, 359 |
| Alw21I | GWGCWC | 1 cut(s) | 39 |
| AlwI | GGATC | 3 cut(s) | 52, 65, 212 |
| ApeKI | GCWGC | 2 cut(s) | 320, 323 |
| ApoI | RAATTY | 2 cut(s) | 50, 133 |
| AsuHPI | GGTGA | 3 cut(s) | 28, 142, 299 |
| BamHI | GGATCC | 1 cut(s) | 57 |
| BanII | GRGCYC | 1 cut(s) | 39 |
| Bbv12I | GWGCWC | 1 cut(s) | 39 |
| BbvI | GCAGC | 2 cut(s) | 307, 310 |
| BccI | CCATC | 3 cut(s) | 318, 340, 407 |
| BciVI | GTATCC | 1 cut(s) | 371 |
| BclI | TGATCA | 2 cut(s) | 18, 304 |
| BfuAI | ACCTGC | 1 cut(s) | 390 |
| BfuI | GTATCC | 1 cut(s) | 371 |
| BglII | AGATCT | 1 cut(s) | 192 |
| BisI | GCNGC | 2 cut(s) | 321, 324 |
| BlsI | GCNGC | 2 cut(s) | 322, 325 |
| BmiI | GGNNCC | 1 cut(s) | 59 |
| BmsI | GCATC | 1 cut(s) | 318 |
| BsaBI | GATNNNNATC | 1 cut(s) | 309 |
| Bse1I | ACTGG | 1 cut(s) | 132 |
| Bse8I | GATNNNNATC | 1 cut(s) | 309 |
| BseGI | GGATG | 1 cut(s) | 310 |
| BseJI | GATNNNNATC | 1 cut(s) | 309 |
| BseNI | ACTGG | 1 cut(s) | 132 |
| BseXI | GCAGC | 2 cut(s) | 307, 310 |
| BsiHKAI | GWGCWC | 1 cut(s) | 39 |
| Bsp1286I | GDGCHC | 1 cut(s) | 39 |
| Bsp143I | GATC | 6 cut(s) | 18, 57, 112, 192, 217, 304 |
| BspLI | GGNNCC | 1 cut(s) | 59 |
| BspMI | ACCTGC | 1 cut(s) | 390 |
| BspPI | GGATC | 3 cut(s) | 52, 65, 212 |
| BsrI | ACTGG | 1 cut(s) | 132 |
| BssMI | GATC | 6 cut(s) | 18, 57, 112, 192, 217, 304 |
| BstDEI | CTNAG | 1 cut(s) | 355 |
| BstF5I | GGATG | 1 cut(s) | 310 |
| BstKTI | GATC | 6 cut(s) | 21, 60, 115, 195, 220, 307 |
| BstMBI | GATC | 6 cut(s) | 18, 57, 112, 192, 217, 304 |
| BstV1I | GCAGC | 2 cut(s) | 307, 310 |
| BstX2I | RGATCY | 2 cut(s) | 57, 192 |
| BstYI | RGATCY | 2 cut(s) | 57, 192 |
| BsuI | GTATCC | 1 cut(s) | 371 |
| BtgZI | GCGATG | 1 cut(s) | 341 |
| BtsCI | GGATG | 1 cut(s) | 310 |
| BtsIMutI | CAGTG | 1 cut(s) | 125 |
| BveI | ACCTGC | 1 cut(s) | 390 |
| CviJI | RGCY | 3 cut(s) | 6, 37, 359 |
| CviKI_1 | RGCY | 3 cut(s) | 6, 37, 359 |
| DdeI | CTNAG | 1 cut(s) | 355 |
| DpnI | GATC | 6 cut(s) | 20, 59, 114, 194, 219, 306 |
| DpnII | GATC | 6 cut(s) | 18, 57, 112, 192, 217, 304 |
| Ecl136II | GAGCTC | 1 cut(s) | 37 |
| Eco24I | GRGCYC | 1 cut(s) | 39 |
| Eco53kI | GAGCTC | 1 cut(s) | 37 |
| EcoICRI | GAGCTC | 1 cut(s) | 37 |
| EcoT38I | GRGCYC | 1 cut(s) | 39 |
| FaiI | YATR | 7 cut(s) | 12, 31, 45, 65, 201, 264, 404 |
| FbaI | TGATCA | 2 cut(s) | 18, 304 |
| Fnu4HI | GCNGC | 2 cut(s) | 321, 324 |
| FokI | GGATG | 1 cut(s) | 297 |
| FriOI | GRGCYC | 1 cut(s) | 39 |
| Fsp4HI | GCNGC | 2 cut(s) | 321, 324 |
| GluI | GCNGC | 2 cut(s) | 321, 324 |
| HinfI | GANTC | 1 cut(s) | 243 |
| HphI | GGTGA | 3 cut(s) | 28, 142, 299 |
| Hpy99I | CGWCG | 1 cut(s) | 320 |
| HpyAV | CCTTC | 2 cut(s) | 87, 139 |
| HpyF3I | CTNAG | 1 cut(s) | 355 |
| Ksp22I | TGATCA | 2 cut(s) | 18, 304 |
| Kzo9I | GATC | 6 cut(s) | 18, 57, 112, 192, 217, 304 |
| LmnI | GCTCC | 1 cut(s) | 34 |
| LpnPI | CCDG | 3 cut(s) | 113, 333, 395 |
| Lsp1109I | GCAGC | 2 cut(s) | 307, 310 |
| LweI | GCATC | 1 cut(s) | 318 |
| MaeIII | GTNAC | 2 cut(s) | 290, 350 |
| MalI | GATC | 6 cut(s) | 20, 59, 114, 194, 219, 306 |
| MboI | GATC | 6 cut(s) | 18, 57, 112, 192, 217, 304 |
| MboII | GAAGA | 4 cut(s) | 187, 189, 380, 410 |
| MflI | RGATCY | 2 cut(s) | 57, 192 |
| MhlI | GDGCHC | 1 cut(s) | 39 |
| MluCI | AATT | 3 cut(s) | 50, 133, 300 |
| MmeI | TCCRAC | 1 cut(s) | 370 |
| MnlI | CCTC | 1 cut(s) | 358 |
| MseI | TTAA | 3 cut(s) | 69, 204, 299 |
| NdeII | GATC | 6 cut(s) | 18, 57, 112, 192, 217, 304 |
| NlaIV | GGNNCC | 1 cut(s) | 59 |
| NmuCI | GTSAC | 1 cut(s) | 350 |
| PfeI | GAWTC | 1 cut(s) | 243 |
| PkrI | GCNGC | 2 cut(s) | 322, 325 |
| Psp124BI | GAGCTC | 1 cut(s) | 39 |
| PspN4I | GGNNCC | 1 cut(s) | 59 |
| PsuI | RGATCY | 2 cut(s) | 57, 192 |
| SacI | GAGCTC | 1 cut(s) | 39 |
| SaqAI | TTAA | 3 cut(s) | 69, 204, 299 |
| SatI | GCNGC | 2 cut(s) | 321, 324 |
| Sau3AI | GATC | 6 cut(s) | 18, 57, 112, 192, 217, 304 |
| SduI | GDGCHC | 1 cut(s) | 39 |
| SetI | ASST | 4 cut(s) | 8, 39, 361, 384 |
| SfaNI | GCATC | 1 cut(s) | 318 |
| SgeI | CNNG | 9 cut(s) | 50, 116, 128, 140, 264, 326, 360, 394, 398 |
| Sse9I | AATT | 3 cut(s) | 50, 133, 300 |
| SstI | GAGCTC | 1 cut(s) | 39 |
| TaqI | TCGA | 2 cut(s) | 39, 411 |
| TasI | AATT | 3 cut(s) | 50, 133, 300 |
| TfiI | GAWTC | 1 cut(s) | 243 |
| Tru1I | TTAA | 3 cut(s) | 69, 204, 299 |
| Tru9I | TTAA | 3 cut(s) | 69, 204, 299 |
| TscAI | CASTG | 1 cut(s) | 132 |
| TseFI | GTSAC | 1 cut(s) | 350 |
| TseI | GCWGC | 2 cut(s) | 320, 323 |
| Tsp45I | GTSAC | 1 cut(s) | 350 |
| TspDTI | ATGAA | 2 cut(s) | 39, 60 |
| TspRI | CASTG | 1 cut(s) | 132 |
| XapI | RAATTY | 2 cut(s) | 50, 133 |