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| Enzyme | Recognition Site | Cut Count | Positions (bp) |
|---|---|---|---|
| AccIII | TCCGGA | 1 cut(s) | 544 |
| AciI | CCGC | 3 cut(s) | 98, 398, 1217 |
| AclWI | GGATC | 1 cut(s) | 217 |
| AcsI | RAATTY | 3 cut(s) | 602, 701, 743 |
| AcuI | CTGAAG | 3 cut(s) | 597, 759, 987 |
| AfaI | GTAC | 2 cut(s) | 392, 800 |
| AfeI | AGCGCT | 1 cut(s) | 155 |
| AfiI | CCNNNNNNNGG | 2 cut(s) | 668, 1002 |
| AgeI | ACCGGT | 1 cut(s) | 466 |
| AjnI | CCWGG | 2 cut(s) | 55, 865 |
| AjuI | GAANNNNNNNTTGG | 2 cut(s) | 71, 103 |
| AluBI | AGCT | 8 cut(s) | 171, 382, 457, 575, 653, 753, 978, 1009 |
| AluI | AGCT | 8 cut(s) | 171, 382, 457, 575, 653, 753, 978, 1009 |
| AlwI | GGATC | 1 cut(s) | 217 |
| Aor13HI | TCCGGA | 1 cut(s) | 544 |
| Aor51HI | AGCGCT | 1 cut(s) | 155 |
| ApoI | RAATTY | 3 cut(s) | 602, 701, 743 |
| ArsI | GACNNNNNNTTYG | 2 cut(s) | 1276, 1308 |
| AsiGI | ACCGGT | 1 cut(s) | 466 |
| AspLEI | GCGC | 1 cut(s) | 156 |
| AspS9I | GGNCC | 2 cut(s) | 140, 464 |
| AsuHPI | GGTGA | 2 cut(s) | 1000, 1293 |
| AsuII | TTCGAA | 2 cut(s) | 495, 1271 |
| AsuNHI | GCTAGC | 1 cut(s) | 898 |
| AvaII | GGWCC | 2 cut(s) | 140, 464 |
| BbsI | GAAGAC | 4 cut(s) | 975, 1185, 1253, 1289 |
| BccI | CCATC | 3 cut(s) | 131, 409, 474 |
| BceAI | ACGGC | 1 cut(s) | 88 |
| BciT130I | CCWGG | 2 cut(s) | 57, 867 |
| BciVI | GTATCC | 1 cut(s) | 498 |
| BfaI | CTAG | 6 cut(s) | 134, 899, 939, 1079, 1233, 1315 |
| BfmI | CTRYAG | 1 cut(s) | 1185 |
| BfoI | RGCGCY | 1 cut(s) | 157 |
| BfuI | GTATCC | 1 cut(s) | 498 |
| BisI | GCNGC | 1 cut(s) | 1218 |
| BlsI | GCNGC | 1 cut(s) | 1219 |
| BmcAI | AGTACT | 1 cut(s) | 392 |
| Bme1390I | CCNGG | 2 cut(s) | 57, 867 |
| Bme18I | GGWCC | 2 cut(s) | 140, 464 |
| BmgT120I | GGNCC | 2 cut(s) | 140, 464 |
| BmiI | GGNNCC | 3 cut(s) | 176, 231, 1032 |
| BmrFI | CCNGG | 2 cut(s) | 57, 867 |
| BmsI | GCATC | 4 cut(s) | 319, 550, 639, 1229 |
| BmtI | GCTAGC | 1 cut(s) | 902 |
| BoxI | GACNNNNGTC | 1 cut(s) | 1017 |
| BpiI | GAAGAC | 4 cut(s) | 975, 1185, 1253, 1289 |
| Bpu10I | CCTNAGC | 1 cut(s) | 945 |
| Bpu14I | TTCGAA | 2 cut(s) | 495, 1271 |
| BpuEI | CTTGAG | 1 cut(s) | 404 |
| BsaWI | WCCGGW | 2 cut(s) | 466, 544 |
| Bsc4I | CCNNNNNNNGG | 2 cut(s) | 668, 1002 |
| Bse118I | RCCGGY | 1 cut(s) | 466 |
| Bse3DI | GCAATG | 1 cut(s) | 555 |
| BseAI | TCCGGA | 1 cut(s) | 544 |
| BseBI | CCWGG | 2 cut(s) | 57, 867 |
| BseGI | GGATG | 5 cut(s) | 280, 489, 541, 630, 876 |
| BseLI | CCNNNNNNNGG | 2 cut(s) | 668, 1002 |
| BseMI | GCAATG | 1 cut(s) | 555 |
| BseMII | CTCAG | 3 cut(s) | 552, 863, 873 |
| BshTI | ACCGGT | 1 cut(s) | 466 |
| BsiSI | CCGG | 2 cut(s) | 467, 545 |
| BslFI | GGGAC | 2 cut(s) | 52, 908 |
| BslI | CCNNNNNNNGG | 2 cut(s) | 668, 1002 |
| BsmFI | GGGAC | 2 cut(s) | 52, 908 |
| Bsp119I | TTCGAA | 2 cut(s) | 495, 1271 |
| Bsp13I | TCCGGA | 1 cut(s) | 544 |
| Bsp143I | GATC | 5 cut(s) | 209, 358, 904, 1084, 1189 |
| BspACI | CCGC | 3 cut(s) | 98, 398, 1217 |
| BspCNI | CTCAG | 3 cut(s) | 553, 862, 874 |
| BspEI | TCCGGA | 1 cut(s) | 544 |
| BspLI | GGNNCC | 3 cut(s) | 176, 231, 1032 |
| BspOI | GCTAGC | 1 cut(s) | 902 |
| BspPI | GGATC | 1 cut(s) | 217 |
| BspT104I | TTCGAA | 2 cut(s) | 495, 1271 |
| BsrDI | GCAATG | 1 cut(s) | 555 |
| BsrFI | RCCGGY | 1 cut(s) | 466 |
| BssAI | RCCGGY | 1 cut(s) | 466 |
| BssMI | GATC | 5 cut(s) | 209, 358, 904, 1084, 1189 |
| Bst2UI | CCWGG | 2 cut(s) | 57, 867 |
| Bst4CI | ACNGT | 5 cut(s) | 184, 433, 625, 679, 1136 |
| Bst6I | CTCTTC | 3 cut(s) | 250, 573, 776 |
| BstBI | TTCGAA | 2 cut(s) | 495, 1271 |
| BstC8I | GCNNGC | 5 cut(s) | 158, 169, 725, 858, 900 |
| BstDEI | CTNAG | 7 cut(s) | 318, 561, 849, 882, 945, 1278, 1287 |
| BstF5I | GGATG | 5 cut(s) | 280, 489, 541, 630, 876 |
| BstH2I | RGCGCY | 1 cut(s) | 157 |
| BstHHI | GCGC | 1 cut(s) | 156 |
| BstKTI | GATC | 5 cut(s) | 212, 361, 907, 1087, 1192 |
| BstMBI | GATC | 5 cut(s) | 209, 358, 904, 1084, 1189 |
| BstMWI | GCNNNNNNNGC | 1 cut(s) | 581 |
| BstNI | CCWGG | 2 cut(s) | 57, 867 |
| BstNSI | RCATGY | 1 cut(s) | 727 |
| BstPAI | GACNNNNGTC | 1 cut(s) | 1017 |
| BstSCI | CCNGG | 2 cut(s) | 55, 865 |
| BstSFI | CTRYAG | 1 cut(s) | 1185 |
| BstV2I | GAAGAC | 4 cut(s) | 975, 1185, 1253, 1289 |
| BsuI | GTATCC | 1 cut(s) | 498 |
| BtsCI | GGATG | 5 cut(s) | 280, 489, 541, 630, 876 |
| BtsIMutI | CAGTG | 2 cut(s) | 735, 857 |
| Cac8I | GCNNGC | 5 cut(s) | 158, 169, 725, 858, 900 |
| CfoI | GCGC | 1 cut(s) | 156 |
| Cfr10I | RCCGGY | 1 cut(s) | 466 |
| Cfr13I | GGNCC | 2 cut(s) | 140, 464 |
| CsiI | ACCWGGT | 1 cut(s) | 865 |
| Csp6I | GTAC | 2 cut(s) | 391, 799 |
| CspAI | ACCGGT | 1 cut(s) | 466 |
| CviAII | CATG | 8 cut(s) | 218, 223, 305, 314, 724, 838, 917, 973 |
| CviQI | GTAC | 2 cut(s) | 391, 799 |
| DdeI | CTNAG | 7 cut(s) | 318, 561, 849, 882, 945, 1278, 1287 |
| DpnI | GATC | 5 cut(s) | 211, 360, 906, 1086, 1191 |
| DpnII | GATC | 5 cut(s) | 209, 358, 904, 1084, 1189 |
| DraI | TTTAAA | 1 cut(s) | 1110 |
| Eam1104I | CTCTTC | 3 cut(s) | 250, 573, 776 |
| EarI | CTCTTC | 3 cut(s) | 250, 573, 776 |
| EciI | GGCGGA | 2 cut(s) | 113, 387 |
| Eco47I | GGWCC | 2 cut(s) | 140, 464 |
| Eco47III | AGCGCT | 1 cut(s) | 155 |
| Eco57I | CTGAAG | 3 cut(s) | 597, 759, 987 |
| EcoRII | CCWGG | 2 cut(s) | 55, 865 |
| FaeI | CATG | 8 cut(s) | 221, 226, 308, 317, 727, 841, 920, 976 |
| FalI | AAGNNNNNCTT | 4 cut(s) | 59, 91, 140, 172 |
| FaqI | GGGAC | 2 cut(s) | 52, 908 |
| FatI | CATG | 8 cut(s) | 217, 222, 304, 313, 723, 837, 916, 972 |
| Fnu4HI | GCNGC | 1 cut(s) | 1218 |
| FokI | GGATG | 5 cut(s) | 287, 496, 528, 617, 863 |
| Fsp4HI | GCNGC | 1 cut(s) | 1218 |
| FspBI | CTAG | 6 cut(s) | 134, 899, 939, 1079, 1233, 1315 |
| GlaI | GCGC | 1 cut(s) | 155 |
| GluI | GCNGC | 1 cut(s) | 1218 |
| HaeII | RGCGCY | 1 cut(s) | 157 |
| HapII | CCGG | 2 cut(s) | 467, 545 |
| HhaI | GCGC | 1 cut(s) | 156 |
| Hin1II | CATG | 8 cut(s) | 221, 226, 308, 317, 727, 841, 920, 976 |
| Hin6I | GCGC | 1 cut(s) | 154 |
| HinP1I | GCGC | 1 cut(s) | 154 |
| HinfI | GANTC | 2 cut(s) | 421, 683 |
| HpaII | CCGG | 2 cut(s) | 467, 545 |
| HphI | GGTGA | 2 cut(s) | 1000, 1293 |
| Hpy166II | GTNNAC | 3 cut(s) | 464, 826, 1095 |
| Hpy188I | TCNGA | 2 cut(s) | 144, 479 |
| Hpy188III | TCNNGA | 3 cut(s) | 134, 233, 545 |
| Hpy8I | GTNNAC | 3 cut(s) | 464, 826, 1095 |
| HpyAV | CCTTC | 4 cut(s) | 220, 502, 542, 1060 |
| HpyCH4III | ACNGT | 5 cut(s) | 184, 433, 625, 679, 1136 |
| HpyCH4V | TGCA | 6 cut(s) | 4, 124, 516, 555, 674, 723 |
| HpyF10VI | GCNNNNNNNGC | 1 cut(s) | 581 |
| HpyF3I | CTNAG | 7 cut(s) | 318, 561, 849, 882, 945, 1278, 1287 |
| Hsp92II | CATG | 8 cut(s) | 221, 226, 308, 317, 727, 841, 920, 976 |
| HspAI | GCGC | 1 cut(s) | 154 |
| Kpn2I | TCCGGA | 1 cut(s) | 544 |
| Kzo9I | GATC | 5 cut(s) | 209, 358, 904, 1084, 1189 |
| LmnI | GCTCC | 1 cut(s) | 1006 |
| LweI | GCATC | 4 cut(s) | 319, 550, 639, 1229 |
| MabI | ACCWGGT | 1 cut(s) | 865 |
| MaeI | CTAG | 6 cut(s) | 134, 899, 939, 1079, 1233, 1315 |
| MaeIII | GTNAC | 4 cut(s) | 566, 872, 961, 1299 |
| MalI | GATC | 5 cut(s) | 211, 360, 906, 1086, 1191 |
| MboI | GATC | 5 cut(s) | 209, 358, 904, 1084, 1189 |
| MboII | GAAGA | 8 cut(s) | 237, 590, 752, 793, 980, 1190, 1258, 1294 |
| MfeI | CAATTG | 1 cut(s) | 437 |
| MluCI | AATT | 5 cut(s) | 437, 602, 701, 743, 1105 |
| MlyI | GAGTC | 1 cut(s) | 692 |
| MnlI | CCTC | 4 cut(s) | 276, 574, 777, 885 |
| MroI | TCCGGA | 1 cut(s) | 544 |
| MseI | TTAA | 5 cut(s) | 297, 428, 1041, 1104, 1109 |
| MspA1I | CMGCKG | 1 cut(s) | 653 |
| MspI | CCGG | 2 cut(s) | 467, 545 |
| MspR9I | CCNGG | 2 cut(s) | 57, 867 |
| MunI | CAATTG | 1 cut(s) | 437 |
| MvaI | CCWGG | 2 cut(s) | 57, 867 |
| MwoI | GCNNNNNNNGC | 1 cut(s) | 581 |
| NdeII | GATC | 5 cut(s) | 209, 358, 904, 1084, 1189 |
| NheI | GCTAGC | 1 cut(s) | 898 |
| NlaIII | CATG | 8 cut(s) | 221, 226, 308, 317, 727, 841, 920, 976 |
| NlaIV | GGNNCC | 3 cut(s) | 176, 231, 1032 |
| NmuCI | GTSAC | 2 cut(s) | 872, 1299 |
| NspI | RCATGY | 1 cut(s) | 727 |
| NspV | TTCGAA | 2 cut(s) | 495, 1271 |
| PaeI | GCATGC | 1 cut(s) | 727 |
| PfeI | GAWTC | 1 cut(s) | 421 |
| PflFI | GACNNNGTC | 2 cut(s) | 1252, 1288 |
| PfoI | TCCNGGA | 1 cut(s) | 55 |
| PinAI | ACCGGT | 1 cut(s) | 466 |
| PkrI | GCNGC | 1 cut(s) | 1219 |
| PleI | GAGTC | 1 cut(s) | 691 |
| PpsI | GAGTC | 1 cut(s) | 691 |
| PshAI | GACNNNNGTC | 1 cut(s) | 1017 |
| Psp6I | CCWGG | 2 cut(s) | 55, 865 |
| PspGI | CCWGG | 2 cut(s) | 55, 865 |
| PspN4I | GGNNCC | 3 cut(s) | 176, 231, 1032 |
| PspPI | GGNCC | 2 cut(s) | 140, 464 |
| PsyI | GACNNNGTC | 2 cut(s) | 1252, 1288 |
| PvuII | CAGCTG | 1 cut(s) | 653 |
| RsaI | GTAC | 2 cut(s) | 392, 800 |
| RsaNI | GTAC | 2 cut(s) | 391, 799 |
| SaqAI | TTAA | 5 cut(s) | 297, 428, 1041, 1104, 1109 |
| SatI | GCNGC | 1 cut(s) | 1218 |
| Sau3AI | GATC | 5 cut(s) | 209, 358, 904, 1084, 1189 |
| Sau96I | GGNCC | 2 cut(s) | 140, 464 |
| ScaI | AGTACT | 1 cut(s) | 392 |
| SchI | GAGTC | 1 cut(s) | 692 |
| ScrFI | CCNGG | 2 cut(s) | 57, 867 |
| SexAI | ACCWGGT | 1 cut(s) | 865 |
| SfaNI | GCATC | 4 cut(s) | 319, 550, 639, 1229 |
| SfcI | CTRYAG | 1 cut(s) | 1185 |
| SfuI | TTCGAA | 2 cut(s) | 495, 1271 |
| SinI | GGWCC | 2 cut(s) | 140, 464 |
| SmiI | ATTTAAAT | 1 cut(s) | 1110 |
| SmlI | CTYRAG | 1 cut(s) | 383 |
| SmoI | CTYRAG | 1 cut(s) | 383 |
| SphI | GCATGC | 1 cut(s) | 727 |
| Sse9I | AATT | 5 cut(s) | 437, 602, 701, 743, 1105 |
| SsiI | CCGC | 3 cut(s) | 98, 398, 1217 |
| SspI | AATATT | 1 cut(s) | 1167 |
| SspMI | CTAG | 6 cut(s) | 134, 899, 939, 1079, 1233, 1315 |
| StyD4I | CCNGG | 2 cut(s) | 55, 865 |
| SwaI | ATTTAAAT | 1 cut(s) | 1110 |
| TaaI | ACNGT | 5 cut(s) | 184, 433, 625, 679, 1136 |
| TaqI | TCGA | 4 cut(s) | 366, 495, 1256, 1271 |
| TasI | AATT | 5 cut(s) | 437, 602, 701, 743, 1105 |
| TatI | WGTACW | 2 cut(s) | 390, 798 |
| TauI | GCSGC | 1 cut(s) | 1220 |
| TfiI | GAWTC | 1 cut(s) | 421 |
| Tru1I | TTAA | 5 cut(s) | 297, 428, 1041, 1104, 1109 |
| Tru9I | TTAA | 5 cut(s) | 297, 428, 1041, 1104, 1109 |
| TscAI | CASTG | 2 cut(s) | 742, 857 |
| TseFI | GTSAC | 2 cut(s) | 872, 1299 |
| Tsp45I | GTSAC | 2 cut(s) | 872, 1299 |
| TspDTI | ATGAA | 6 cut(s) | 206, 239, 413, 521, 825, 933 |
| TspRI | CASTG | 2 cut(s) | 742, 857 |
| Tth111I | GACNNNGTC | 2 cut(s) | 1252, 1288 |
| VpaK11BI | GGWCC | 2 cut(s) | 140, 464 |
| XapI | RAATTY | 3 cut(s) | 602, 701, 743 |
| XbaI | TCTAGA | 1 cut(s) | 133 |
| XceI | RCATGY | 1 cut(s) | 727 |
| XcmI | CCANNNNNNNNNTGG | 2 cut(s) | 168, 665 |
| XspI | CTAG | 6 cut(s) | 134, 899, 939, 1079, 1233, 1315 |
| ZrmI | AGTACT | 1 cut(s) | 392 |