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| Enzyme | Recognition Site | Cut Count | Positions (bp) |
|---|---|---|---|
| AclWI | GGATC | 2 cut(s) | 174, 250 |
| AcsI | RAATTY | 2 cut(s) | 392, 401 |
| AdeI | CACNNNGTG | 1 cut(s) | 126 |
| AfaI | GTAC | 1 cut(s) | 297 |
| AfiI | CCNNNNNNNGG | 1 cut(s) | 498 |
| AgsI | TTSAA | 4 cut(s) | 269, 284, 397, 487 |
| AjnI | CCWGG | 1 cut(s) | 433 |
| AluBI | AGCT | 1 cut(s) | 373 |
| AluI | AGCT | 1 cut(s) | 373 |
| Alw26I | GTCTC | 1 cut(s) | 87 |
| AlwI | GGATC | 2 cut(s) | 174, 250 |
| AoxI | GGCC | 1 cut(s) | 311 |
| ApoI | RAATTY | 2 cut(s) | 392, 401 |
| AsuHPI | GGTGA | 1 cut(s) | 368 |
| BciT130I | CCWGG | 1 cut(s) | 435 |
| BcoDI | GTCTC | 1 cut(s) | 87 |
| BfaI | CTAG | 2 cut(s) | 90, 526 |
| BglII | AGATCT | 1 cut(s) | 32 |
| Bme1390I | CCNGG | 1 cut(s) | 435 |
| BmiI | GGNNCC | 1 cut(s) | 439 |
| BmrFI | CCNGG | 1 cut(s) | 435 |
| BmsI | GCATC | 1 cut(s) | 403 |
| BsaI | GGTCTC | 1 cut(s) | 87 |
| BsaJI | CCNNGG | 1 cut(s) | 433 |
| Bsc4I | CCNNNNNNNGG | 1 cut(s) | 498 |
| BseBI | CCWGG | 1 cut(s) | 435 |
| BseDI | CCNNGG | 1 cut(s) | 433 |
| BseGI | GGATG | 2 cut(s) | 370, 507 |
| BseLI | CCNNNNNNNGG | 1 cut(s) | 498 |
| BseRI | GAGGAG | 1 cut(s) | 383 |
| BsgI | GTGCAG | 1 cut(s) | 135 |
| BshFI | GGCC | 1 cut(s) | 313 |
| BslI | CCNNNNNNNGG | 1 cut(s) | 498 |
| BsmAI | GTCTC | 1 cut(s) | 87 |
| BsnI | GGCC | 1 cut(s) | 313 |
| Bso31I | GGTCTC | 1 cut(s) | 87 |
| Bsp1407I | TGTACA | 1 cut(s) | 295 |
| Bsp143I | GATC | 3 cut(s) | 32, 166, 242 |
| BspANI | GGCC | 1 cut(s) | 313 |
| BspHI | TCATGA | 1 cut(s) | 37 |
| BspLI | GGNNCC | 1 cut(s) | 439 |
| BspPI | GGATC | 2 cut(s) | 174, 250 |
| BspTNI | GGTCTC | 1 cut(s) | 87 |
| BsrGI | TGTACA | 1 cut(s) | 295 |
| BssECI | CCNNGG | 1 cut(s) | 433 |
| BssMI | GATC | 3 cut(s) | 32, 166, 242 |
| Bst2UI | CCWGG | 1 cut(s) | 435 |
| Bst4CI | ACNGT | 1 cut(s) | 104 |
| BstAUI | TGTACA | 1 cut(s) | 295 |
| BstC8I | GCNNGC | 1 cut(s) | 21 |
| BstF5I | GGATG | 2 cut(s) | 370, 507 |
| BstKTI | GATC | 3 cut(s) | 35, 169, 245 |
| BstMAI | GTCTC | 1 cut(s) | 87 |
| BstMBI | GATC | 3 cut(s) | 32, 166, 242 |
| BstMWI | GCNNNNNNNGC | 1 cut(s) | 472 |
| BstNI | CCWGG | 1 cut(s) | 435 |
| BstNSI | RCATGY | 1 cut(s) | 23 |
| BstSCI | CCNGG | 1 cut(s) | 433 |
| BstX2I | RGATCY | 1 cut(s) | 32 |
| BstYI | RGATCY | 1 cut(s) | 32 |
| BsuRI | GGCC | 1 cut(s) | 313 |
| BtsCI | GGATG | 2 cut(s) | 370, 507 |
| Cac8I | GCNNGC | 1 cut(s) | 21 |
| CciI | TCATGA | 1 cut(s) | 37 |
| Csp6I | GTAC | 1 cut(s) | 296 |
| CviAII | CATG | 6 cut(s) | 12, 20, 38, 218, 307, 497 |
| CviJI | RGCY | 5 cut(s) | 277, 313, 373, 475, 491 |
| CviKI_1 | RGCY | 5 cut(s) | 277, 313, 373, 475, 491 |
| CviQI | GTAC | 1 cut(s) | 296 |
| DpnI | GATC | 3 cut(s) | 34, 168, 244 |
| DpnII | GATC | 3 cut(s) | 32, 166, 242 |
| DraIII | CACNNNGTG | 1 cut(s) | 126 |
| Eco31I | GGTCTC | 1 cut(s) | 87 |
| EcoRI | GAATTC | 1 cut(s) | 392 |
| EcoRII | CCWGG | 1 cut(s) | 433 |
| FaeI | CATG | 6 cut(s) | 15, 23, 41, 221, 310, 500 |
| FalI | AAGNNNNNCTT | 2 cut(s) | 155, 187 |
| FatI | CATG | 6 cut(s) | 11, 19, 37, 217, 306, 496 |
| FokI | GGATG | 2 cut(s) | 377, 514 |
| FspBI | CTAG | 2 cut(s) | 90, 526 |
| HaeIII | GGCC | 1 cut(s) | 313 |
| Hin1II | CATG | 6 cut(s) | 15, 23, 41, 221, 310, 500 |
| HinfI | GANTC | 5 cut(s) | 236, 269, 284, 290, 509 |
| HphI | GGTGA | 1 cut(s) | 368 |
| Hpy188I | TCNGA | 3 cut(s) | 274, 289, 523 |
| Hpy188III | TCNNGA | 4 cut(s) | 38, 240, 266, 397 |
| HpyAV | CCTTC | 1 cut(s) | 347 |
| HpyCH4III | ACNGT | 1 cut(s) | 104 |
| HpyCH4V | TGCA | 3 cut(s) | 19, 120, 152 |
| HpyF10VI | GCNNNNNNNGC | 1 cut(s) | 472 |
| Hsp92II | CATG | 6 cut(s) | 15, 23, 41, 221, 310, 500 |
| Kzo9I | GATC | 3 cut(s) | 32, 166, 242 |
| LmnI | GCTCC | 1 cut(s) | 370 |
| LpnPI | CCDG | 4 cut(s) | 284, 327, 420, 447 |
| LweI | GCATC | 1 cut(s) | 403 |
| MaeI | CTAG | 2 cut(s) | 90, 526 |
| MaeIII | GTNAC | 1 cut(s) | 302 |
| MalI | GATC | 3 cut(s) | 34, 168, 244 |
| MboI | GATC | 3 cut(s) | 32, 166, 242 |
| MfeI | CAATTG | 1 cut(s) | 279 |
| MflI | RGATCY | 1 cut(s) | 32 |
| MluCI | AATT | 4 cut(s) | 279, 329, 392, 401 |
| MlyI | GAGTC | 2 cut(s) | 245, 284 |
| MmeI | TCCRAC | 1 cut(s) | 330 |
| MnlI | CCTC | 5 cut(s) | 217, 303, 355, 361, 465 |
| MseI | TTAA | 1 cut(s) | 189 |
| MslI | CAYNNNNRTG | 1 cut(s) | 455 |
| MspR9I | CCNGG | 1 cut(s) | 435 |
| MunI | CAATTG | 1 cut(s) | 279 |
| MvaI | CCWGG | 1 cut(s) | 435 |
| MwoI | GCNNNNNNNGC | 1 cut(s) | 472 |
| NdeII | GATC | 3 cut(s) | 32, 166, 242 |
| NlaIII | CATG | 6 cut(s) | 15, 23, 41, 221, 310, 500 |
| NlaIV | GGNNCC | 1 cut(s) | 439 |
| NspI | RCATGY | 1 cut(s) | 23 |
| PaeI | GCATGC | 1 cut(s) | 23 |
| PagI | TCATGA | 1 cut(s) | 37 |
| PfeI | GAWTC | 3 cut(s) | 269, 284, 509 |
| PleI | GAGTC | 2 cut(s) | 244, 284 |
| PpsI | GAGTC | 2 cut(s) | 244, 284 |
| Psp6I | CCWGG | 1 cut(s) | 433 |
| PspGI | CCWGG | 1 cut(s) | 433 |
| PspN4I | GGNNCC | 1 cut(s) | 439 |
| PsuI | RGATCY | 1 cut(s) | 32 |
| RsaI | GTAC | 1 cut(s) | 297 |
| RsaNI | GTAC | 1 cut(s) | 296 |
| RseI | CAYNNNNRTG | 1 cut(s) | 455 |
| SaqAI | TTAA | 1 cut(s) | 189 |
| Sau3AI | GATC | 3 cut(s) | 32, 166, 242 |
| SchI | GAGTC | 2 cut(s) | 245, 284 |
| ScrFI | CCNGG | 1 cut(s) | 435 |
| SetI | ASST | 4 cut(s) | 11, 228, 358, 375 |
| SfaNI | GCATC | 1 cut(s) | 403 |
| SmiMI | CAYNNNNRTG | 1 cut(s) | 455 |
| SphI | GCATGC | 1 cut(s) | 23 |
| Sse9I | AATT | 4 cut(s) | 279, 329, 392, 401 |
| SspMI | CTAG | 2 cut(s) | 90, 526 |
| StyD4I | CCNGG | 1 cut(s) | 433 |
| TaaI | ACNGT | 1 cut(s) | 104 |
| TaqI | TCGA | 2 cut(s) | 377, 512 |
| TasI | AATT | 4 cut(s) | 279, 329, 392, 401 |
| TatI | WGTACW | 1 cut(s) | 295 |
| TfiI | GAWTC | 3 cut(s) | 269, 284, 509 |
| Tru1I | TTAA | 1 cut(s) | 189 |
| Tru9I | TTAA | 1 cut(s) | 189 |
| TspDTI | ATGAA | 4 cut(s) | 54, 336, 405, 473 |
| TspGWI | ACGGA | 1 cut(s) | 266 |
| XapI | RAATTY | 2 cut(s) | 392, 401 |
| XceI | RCATGY | 1 cut(s) | 23 |
| XspI | CTAG | 2 cut(s) | 90, 526 |