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| Enzyme | Recognition Site | Cut Count | Positions (bp) |
|---|---|---|---|
| AasI | GACNNNNNNGTC | 1 cut(s) | 716 |
| AciI | CCGC | 2 cut(s) | 46, 449 |
| AcsI | RAATTY | 1 cut(s) | 390 |
| AcuI | CTGAAG | 2 cut(s) | 114, 171 |
| AcvI | CACGTG | 1 cut(s) | 266 |
| AfaI | GTAC | 2 cut(s) | 110, 733 |
| AfiI | CCNNNNNNNGG | 1 cut(s) | 157 |
| AgsI | TTSAA | 4 cut(s) | 156, 433, 566, 681 |
| AluBI | AGCT | 5 cut(s) | 101, 233, 627, 749, 779 |
| AluI | AGCT | 5 cut(s) | 101, 233, 627, 749, 779 |
| Alw26I | GTCTC | 1 cut(s) | 295 |
| AlwNI | CAGNNNCTG | 1 cut(s) | 212 |
| ApeKI | GCWGC | 1 cut(s) | 191 |
| ApoI | RAATTY | 1 cut(s) | 390 |
| ArsI | GACNNNNNNTTYG | 2 cut(s) | 110, 142 |
| Asp700I | GAANNNNTTC | 1 cut(s) | 151 |
| AsuII | TTCGAA | 1 cut(s) | 12 |
| BbrPI | CACGTG | 1 cut(s) | 266 |
| BbsI | GAAGAC | 1 cut(s) | 573 |
| BbvI | GCAGC | 1 cut(s) | 203 |
| BccI | CCATC | 3 cut(s) | 579, 675, 716 |
| BciVI | GTATCC | 1 cut(s) | 15 |
| BclI | TGATCA | 1 cut(s) | 520 |
| BcoDI | GTCTC | 1 cut(s) | 295 |
| BfaI | CTAG | 1 cut(s) | 582 |
| BfuI | GTATCC | 1 cut(s) | 15 |
| BisI | GCNGC | 1 cut(s) | 192 |
| BlsI | GCNGC | 1 cut(s) | 193 |
| BmcAI | AGTACT | 1 cut(s) | 110 |
| BmsI | GCATC | 1 cut(s) | 309 |
| BpiI | GAAGAC | 1 cut(s) | 573 |
| BplI | GAGNNNNNCTC | 2 cut(s) | 98, 130 |
| Bpu14I | TTCGAA | 1 cut(s) | 12 |
| BsaAI | YACGTR | 1 cut(s) | 266 |
| BsaBI | GATNNNNATC | 1 cut(s) | 666 |
| Bsc4I | CCNNNNNNNGG | 1 cut(s) | 157 |
| Bse8I | GATNNNNATC | 1 cut(s) | 666 |
| BseGI | GGATG | 2 cut(s) | 475, 667 |
| BseJI | GATNNNNATC | 1 cut(s) | 666 |
| BseLI | CCNNNNNNNGG | 1 cut(s) | 157 |
| BseXI | GCAGC | 1 cut(s) | 203 |
| BslI | CCNNNNNNNGG | 1 cut(s) | 157 |
| BsmAI | GTCTC | 1 cut(s) | 295 |
| Bsp119I | TTCGAA | 1 cut(s) | 12 |
| Bsp143I | GATC | 2 cut(s) | 278, 520 |
| BspACI | CCGC | 2 cut(s) | 46, 449 |
| BspT104I | TTCGAA | 1 cut(s) | 12 |
| BssMI | GATC | 2 cut(s) | 278, 520 |
| Bst4CI | ACNGT | 3 cut(s) | 142, 244, 293 |
| Bst6I | CTCTTC | 1 cut(s) | 636 |
| BstBAI | YACGTR | 1 cut(s) | 266 |
| BstBI | TTCGAA | 1 cut(s) | 12 |
| BstC8I | GCNNGC | 1 cut(s) | 747 |
| BstDEI | CTNAG | 1 cut(s) | 411 |
| BstF5I | GGATG | 2 cut(s) | 475, 667 |
| BstKTI | GATC | 2 cut(s) | 281, 523 |
| BstMAI | GTCTC | 1 cut(s) | 295 |
| BstMBI | GATC | 2 cut(s) | 278, 520 |
| BstMWI | GCNNNNNNNGC | 2 cut(s) | 98, 542 |
| BstNSI | RCATGY | 1 cut(s) | 367 |
| BstV1I | GCAGC | 1 cut(s) | 203 |
| BstV2I | GAAGAC | 1 cut(s) | 573 |
| BsuI | GTATCC | 1 cut(s) | 15 |
| BtsCI | GGATG | 2 cut(s) | 475, 667 |
| BtsIMutI | CAGTG | 2 cut(s) | 240, 298 |
| Cac8I | GCNNGC | 1 cut(s) | 747 |
| CaiI | CAGNNNCTG | 1 cut(s) | 212 |
| Csp6I | GTAC | 2 cut(s) | 109, 732 |
| CviAII | CATG | 3 cut(s) | 364, 542, 742 |
| CviJI | RGCY | 8 cut(s) | 69, 101, 181, 194, 233, 627, 749, 779 |
| CviKI_1 | RGCY | 8 cut(s) | 69, 101, 181, 194, 233, 627, 749, 779 |
| CviQI | GTAC | 2 cut(s) | 109, 732 |
| DdeI | CTNAG | 1 cut(s) | 411 |
| DpnI | GATC | 2 cut(s) | 280, 522 |
| DpnII | GATC | 2 cut(s) | 278, 520 |
| DrdI | GACNNNNNNGTC | 1 cut(s) | 716 |
| DseDI | GACNNNNNNGTC | 1 cut(s) | 716 |
| Eam1104I | CTCTTC | 1 cut(s) | 636 |
| EarI | CTCTTC | 1 cut(s) | 636 |
| Eco57I | CTGAAG | 2 cut(s) | 114, 171 |
| Eco72I | CACGTG | 1 cut(s) | 266 |
| FaeI | CATG | 3 cut(s) | 367, 545, 745 |
| FalI | AAGNNNNNCTT | 2 cut(s) | 335, 367 |
| FatI | CATG | 3 cut(s) | 363, 541, 741 |
| FbaI | TGATCA | 1 cut(s) | 520 |
| Fnu4HI | GCNGC | 1 cut(s) | 192 |
| FokI | GGATG | 2 cut(s) | 482, 674 |
| Fsp4HI | GCNGC | 1 cut(s) | 192 |
| FspBI | CTAG | 1 cut(s) | 582 |
| GluI | GCNGC | 1 cut(s) | 192 |
| Hin1II | CATG | 3 cut(s) | 367, 545, 745 |
| HindIII | AAGCTT | 2 cut(s) | 99, 777 |
| HinfI | GANTC | 6 cut(s) | 49, 147, 203, 421, 578, 604 |
| Hpy166II | GTNNAC | 1 cut(s) | 689 |
| Hpy188I | TCNGA | 2 cut(s) | 178, 288 |
| Hpy188III | TCNNGA | 5 cut(s) | 386, 401, 582, 608, 681 |
| Hpy8I | GTNNAC | 1 cut(s) | 689 |
| HpyAV | CCTTC | 3 cut(s) | 59, 162, 253 |
| HpyCH4III | ACNGT | 3 cut(s) | 142, 244, 293 |
| HpyCH4IV | ACGT | 1 cut(s) | 265 |
| HpyCH4V | TGCA | 2 cut(s) | 322, 335 |
| HpyF10VI | GCNNNNNNNGC | 2 cut(s) | 98, 542 |
| HpyF3I | CTNAG | 1 cut(s) | 411 |
| HpySE526I | ACGT | 1 cut(s) | 265 |
| Hsp92II | CATG | 3 cut(s) | 367, 545, 745 |
| Ksp22I | TGATCA | 1 cut(s) | 520 |
| Kzo9I | GATC | 2 cut(s) | 278, 520 |
| LmnI | GCTCC | 1 cut(s) | 726 |
| LpnPI | CCDG | 6 cut(s) | 75, 345, 371, 438, 621, 705 |
| Lsp1109I | GCAGC | 1 cut(s) | 203 |
| LweI | GCATC | 1 cut(s) | 309 |
| MaeI | CTAG | 1 cut(s) | 582 |
| MaeII | ACGT | 1 cut(s) | 265 |
| MaeIII | GTNAC | 2 cut(s) | 208, 266 |
| MalI | GATC | 2 cut(s) | 280, 522 |
| MboI | GATC | 2 cut(s) | 278, 520 |
| MboII | GAAGA | 3 cut(s) | 107, 578, 653 |
| MluCI | AATT | 5 cut(s) | 381, 390, 473, 493, 655 |
| MlyI | GAGTC | 1 cut(s) | 598 |
| MmeI | TCCRAC | 2 cut(s) | 124, 153 |
| MnlI | CCTC | 3 cut(s) | 143, 677, 751 |
| MroXI | GAANNNNTTC | 1 cut(s) | 151 |
| MseI | TTAA | 2 cut(s) | 225, 462 |
| MslI | CAYNNNNRTG | 1 cut(s) | 516 |
| MwoI | GCNNNNNNNGC | 2 cut(s) | 98, 542 |
| NdeII | GATC | 2 cut(s) | 278, 520 |
| NlaIII | CATG | 3 cut(s) | 367, 545, 745 |
| NmuCI | GTSAC | 1 cut(s) | 266 |
| NspI | RCATGY | 1 cut(s) | 367 |
| NspV | TTCGAA | 1 cut(s) | 12 |
| PcsI | WCGNNNNNNNCGW | 1 cut(s) | 717 |
| PdmI | GAANNNNTTC | 1 cut(s) | 151 |
| PfeI | GAWTC | 5 cut(s) | 49, 147, 203, 421, 578 |
| PkrI | GCNGC | 1 cut(s) | 193 |
| PleI | GAGTC | 1 cut(s) | 598 |
| PmaCI | CACGTG | 1 cut(s) | 266 |
| PmlI | CACGTG | 1 cut(s) | 266 |
| PpsI | GAGTC | 1 cut(s) | 598 |
| Ppu21I | YACGTR | 1 cut(s) | 266 |
| PspCI | CACGTG | 1 cut(s) | 266 |
| PstNI | CAGNNNCTG | 1 cut(s) | 212 |
| RsaI | GTAC | 2 cut(s) | 110, 733 |
| RsaNI | GTAC | 2 cut(s) | 109, 732 |
| RseI | CAYNNNNRTG | 1 cut(s) | 516 |
| SaqAI | TTAA | 2 cut(s) | 225, 462 |
| SatI | GCNGC | 1 cut(s) | 192 |
| Sau3AI | GATC | 2 cut(s) | 278, 520 |
| ScaI | AGTACT | 1 cut(s) | 110 |
| SchI | GAGTC | 1 cut(s) | 598 |
| SfaNI | GCATC | 1 cut(s) | 309 |
| SfuI | TTCGAA | 1 cut(s) | 12 |
| SmiMI | CAYNNNNRTG | 1 cut(s) | 516 |
| Sse9I | AATT | 5 cut(s) | 381, 390, 473, 493, 655 |
| SsiI | CCGC | 2 cut(s) | 46, 449 |
| SspMI | CTAG | 1 cut(s) | 582 |
| TaaI | ACNGT | 3 cut(s) | 142, 244, 293 |
| TaiI | ACGT | 1 cut(s) | 268 |
| TaqI | TCGA | 2 cut(s) | 12, 720 |
| TasI | AATT | 5 cut(s) | 381, 390, 473, 493, 655 |
| TatI | WGTACW | 2 cut(s) | 108, 731 |
| TfiI | GAWTC | 5 cut(s) | 49, 147, 203, 421, 578 |
| Tru1I | TTAA | 2 cut(s) | 225, 462 |
| Tru9I | TTAA | 2 cut(s) | 225, 462 |
| TscAI | CASTG | 2 cut(s) | 247, 298 |
| TseFI | GTSAC | 1 cut(s) | 266 |
| TseI | GCWGC | 1 cut(s) | 191 |
| Tsp45I | GTSAC | 1 cut(s) | 266 |
| TspDTI | ATGAA | 5 cut(s) | 38, 486, 654, 714, 730 |
| TspGWI | ACGGA | 1 cut(s) | 173 |
| TspRI | CASTG | 2 cut(s) | 247, 298 |
| XapI | RAATTY | 1 cut(s) | 390 |
| XbaI | TCTAGA | 1 cut(s) | 581 |
| XceI | RCATGY | 1 cut(s) | 367 |
| XmnI | GAANNNNTTC | 1 cut(s) | 151 |
| XspI | CTAG | 1 cut(s) | 582 |
| ZrmI | AGTACT | 1 cut(s) | 110 |