Transposase-associated domain
| Domain Name | Pfam ID | Position | E-value | Description |
|---|---|---|---|---|
| Transpos_assoc | PF13963 | 3 - 77 | 3.9e-15 | Transposase-associated domain |
Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.
| Enzyme | Recognition Site | Cut Count | Positions (bp) |
|---|---|---|---|
| AccB7I | CCANNNNNTGG | 3 cut(s) | 79, 440, 837 |
| AclWI | GGATC | 1 cut(s) | 706 |
| AcsI | RAATTY | 1 cut(s) | 255 |
| AfaI | GTAC | 3 cut(s) | 476, 656, 773 |
| AfiI | CCNNNNNNNGG | 5 cut(s) | 79, 368, 440, 556, 837 |
| AgsI | TTSAA | 5 cut(s) | 164, 400, 517, 569, 797 |
| AjnI | CCWGG | 2 cut(s) | 433, 477 |
| AjuI | GAANNNNNNNTTGG | 2 cut(s) | 33, 65 |
| AluBI | AGCT | 4 cut(s) | 62, 152, 291, 824 |
| AluI | AGCT | 4 cut(s) | 62, 152, 291, 824 |
| Alw26I | GTCTC | 1 cut(s) | 224 |
| AlwI | GGATC | 1 cut(s) | 706 |
| AlwNI | CAGNNNCTG | 2 cut(s) | 83, 728 |
| Ama87I | CYCGRG | 1 cut(s) | 747 |
| AoxI | GGCC | 4 cut(s) | 52, 371, 414, 784 |
| ApaI | GGGCCC | 1 cut(s) | 788 |
| ApeKI | GCWGC | 1 cut(s) | 386 |
| ApoI | RAATTY | 1 cut(s) | 255 |
| Asp700I | GAANNNNTTC | 1 cut(s) | 590 |
| AspLEI | GCGC | 1 cut(s) | 843 |
| AspS9I | GGNCC | 4 cut(s) | 371, 415, 784, 785 |
| AsuHPI | GGTGA | 2 cut(s) | 251, 595 |
| AvaI | CYCGRG | 1 cut(s) | 747 |
| BaeGI | GKGCMC | 1 cut(s) | 788 |
| BanII | GRGCYC | 1 cut(s) | 788 |
| BarI | GAAGNNNNNNTAC | 2 cut(s) | 156, 188 |
| BbvI | GCAGC | 1 cut(s) | 373 |
| BccI | CCATC | 1 cut(s) | 92 |
| BceAI | ACGGC | 1 cut(s) | 815 |
| BciT130I | CCWGG | 2 cut(s) | 435, 479 |
| BciVI | GTATCC | 1 cut(s) | 441 |
| BcoDI | GTCTC | 1 cut(s) | 224 |
| BfmI | CTRYAG | 2 cut(s) | 153, 173 |
| BfoI | RGCGCY | 1 cut(s) | 844 |
| BfuI | GTATCC | 1 cut(s) | 441 |
| BisI | GCNGC | 1 cut(s) | 387 |
| BlsI | GCNGC | 1 cut(s) | 388 |
| Bme1390I | CCNGG | 2 cut(s) | 435, 479 |
| BmeT110I | CYCGRG | 1 cut(s) | 747 |
| BmgT120I | GGNCC | 4 cut(s) | 371, 415, 784, 785 |
| BmiI | GGNNCC | 2 cut(s) | 548, 786 |
| BmrFI | CCNGG | 2 cut(s) | 435, 479 |
| BmsI | GCATC | 3 cut(s) | 292, 303, 619 |
| Bsc4I | CCNNNNNNNGG | 5 cut(s) | 79, 368, 440, 556, 837 |
| Bse118I | RCCGGY | 1 cut(s) | 27 |
| Bse3DI | GCAATG | 1 cut(s) | 528 |
| BseBI | CCWGG | 2 cut(s) | 435, 479 |
| BseGI | GGATG | 3 cut(s) | 196, 318, 680 |
| BseLI | CCNNNNNNNGG | 5 cut(s) | 79, 368, 440, 556, 837 |
| BseMI | GCAATG | 1 cut(s) | 528 |
| BseMII | CTCAG | 2 cut(s) | 720, 816 |
| BseRI | GAGGAG | 2 cut(s) | 351, 425 |
| BseSI | GKGCMC | 1 cut(s) | 788 |
| BseXI | GCAGC | 1 cut(s) | 373 |
| BseYI | CCCAGC | 1 cut(s) | 89 |
| BshFI | GGCC | 4 cut(s) | 54, 373, 416, 786 |
| BsiHKCI | CYCGRG | 1 cut(s) | 747 |
| BsiSI | CCGG | 1 cut(s) | 28 |
| BslFI | GGGAC | 2 cut(s) | 221, 230 |
| BslI | CCNNNNNNNGG | 5 cut(s) | 79, 368, 440, 556, 837 |
| BsmAI | GTCTC | 1 cut(s) | 224 |
| BsmFI | GGGAC | 2 cut(s) | 221, 230 |
| BsmI | GAATGC | 1 cut(s) | 523 |
| BsnI | GGCC | 4 cut(s) | 54, 373, 416, 786 |
| BsoBI | CYCGRG | 1 cut(s) | 747 |
| Bsp120I | GGGCCC | 1 cut(s) | 784 |
| Bsp1286I | GDGCHC | 1 cut(s) | 788 |
| Bsp143I | GATC | 3 cut(s) | 146, 166, 698 |
| BspANI | GGCC | 4 cut(s) | 54, 373, 416, 786 |
| BspCNI | CTCAG | 2 cut(s) | 721, 817 |
| BspLI | GGNNCC | 2 cut(s) | 548, 786 |
| BspPI | GGATC | 1 cut(s) | 706 |
| BsrDI | GCAATG | 1 cut(s) | 528 |
| BsrFI | RCCGGY | 1 cut(s) | 27 |
| BssAI | RCCGGY | 1 cut(s) | 27 |
| BssMI | GATC | 3 cut(s) | 146, 166, 698 |
| Bst2UI | CCWGG | 2 cut(s) | 435, 479 |
| Bst4CI | ACNGT | 4 cut(s) | 235, 354, 543, 771 |
| BstC8I | GCNNGC | 1 cut(s) | 634 |
| BstDEI | CTNAG | 2 cut(s) | 729, 825 |
| BstF5I | GGATG | 3 cut(s) | 196, 318, 680 |
| BstH2I | RGCGCY | 1 cut(s) | 844 |
| BstHHI | GCGC | 1 cut(s) | 843 |
| BstKTI | GATC | 3 cut(s) | 149, 169, 701 |
| BstMAI | GTCTC | 1 cut(s) | 224 |
| BstMBI | GATC | 3 cut(s) | 146, 166, 698 |
| BstNI | CCWGG | 2 cut(s) | 435, 479 |
| BstNSI | RCATGY | 1 cut(s) | 671 |
| BstSCI | CCNGG | 2 cut(s) | 433, 477 |
| BstSFI | CTRYAG | 2 cut(s) | 153, 173 |
| BstSLI | GKGCMC | 1 cut(s) | 788 |
| BstV1I | GCAGC | 1 cut(s) | 373 |
| BstX2I | RGATCY | 1 cut(s) | 698 |
| BstXI | CCANNNNNNTGG | 2 cut(s) | 295, 695 |
| BstYI | RGATCY | 1 cut(s) | 698 |
| BsuI | GTATCC | 1 cut(s) | 441 |
| BsuRI | GGCC | 4 cut(s) | 54, 373, 416, 786 |
| BtsCI | GGATG | 3 cut(s) | 196, 318, 680 |
| BtsI | GCAGTG | 1 cut(s) | 84 |
| BtsIMutI | CAGTG | 2 cut(s) | 84, 548 |
| Cac8I | GCNNGC | 1 cut(s) | 634 |
| CaiI | CAGNNNCTG | 2 cut(s) | 83, 728 |
| CfoI | GCGC | 1 cut(s) | 843 |
| Cfr10I | RCCGGY | 1 cut(s) | 27 |
| Cfr13I | GGNCC | 4 cut(s) | 371, 415, 784, 785 |
| CsiI | ACCWGGT | 1 cut(s) | 477 |
| Csp6I | GTAC | 3 cut(s) | 475, 655, 772 |
| CviAII | CATG | 8 cut(s) | 74, 224, 317, 368, 510, 668, 689, 832 |
| CviQI | GTAC | 3 cut(s) | 475, 655, 772 |
| DdeI | CTNAG | 2 cut(s) | 729, 825 |
| DpnI | GATC | 3 cut(s) | 148, 168, 700 |
| DpnII | GATC | 3 cut(s) | 146, 166, 698 |
| Eco24I | GRGCYC | 1 cut(s) | 788 |
| Eco88I | CYCGRG | 1 cut(s) | 747 |
| EcoRII | CCWGG | 2 cut(s) | 433, 477 |
| EcoT22I | ATGCAT | 1 cut(s) | 318 |
| EcoT38I | GRGCYC | 1 cut(s) | 788 |
| FaeI | CATG | 8 cut(s) | 77, 227, 320, 371, 513, 671, 692, 835 |
| FaqI | GGGAC | 2 cut(s) | 221, 230 |
| FatI | CATG | 8 cut(s) | 73, 223, 316, 367, 509, 667, 688, 831 |
| FauNDI | CATATG | 2 cut(s) | 264, 616 |
| Fnu4HI | GCNGC | 1 cut(s) | 387 |
| FokI | GGATG | 3 cut(s) | 203, 325, 667 |
| FriOI | GRGCYC | 1 cut(s) | 788 |
| Fsp4HI | GCNGC | 1 cut(s) | 387 |
| GlaI | GCGC | 1 cut(s) | 842 |
| GluI | GCNGC | 1 cut(s) | 387 |
| GsaI | CCCAGC | 1 cut(s) | 93 |
| HaeII | RGCGCY | 1 cut(s) | 844 |
| HaeIII | GGCC | 4 cut(s) | 54, 373, 416, 786 |
| HapII | CCGG | 1 cut(s) | 28 |
| HhaI | GCGC | 1 cut(s) | 843 |
| Hin1II | CATG | 8 cut(s) | 77, 227, 320, 371, 513, 671, 692, 835 |
| Hin6I | GCGC | 1 cut(s) | 841 |
| HinP1I | GCGC | 1 cut(s) | 841 |
| HincII | GTYRAC | 1 cut(s) | 528 |
| HindII | GTYRAC | 1 cut(s) | 528 |
| HinfI | GANTC | 5 cut(s) | 506, 569, 725, 733, 827 |
| HpaII | CCGG | 1 cut(s) | 28 |
| HphI | GGTGA | 2 cut(s) | 251, 595 |
| Hpy166II | GTNNAC | 1 cut(s) | 528 |
| Hpy188I | TCNGA | 3 cut(s) | 144, 273, 730 |
| Hpy188III | TCNNGA | 2 cut(s) | 747, 813 |
| Hpy8I | GTNNAC | 1 cut(s) | 528 |
| HpyAV | CCTTC | 1 cut(s) | 65 |
| HpyCH4III | ACNGT | 4 cut(s) | 235, 354, 543, 771 |
| HpyCH4V | TGCA | 5 cut(s) | 25, 77, 316, 521, 722 |
| HpyF3I | CTNAG | 2 cut(s) | 729, 825 |
| Hsp92II | CATG | 8 cut(s) | 77, 227, 320, 371, 513, 671, 692, 835 |
| HspAI | GCGC | 1 cut(s) | 841 |
| Kzo9I | GATC | 3 cut(s) | 146, 166, 698 |
| Lsp1109I | GCAGC | 1 cut(s) | 373 |
| LweI | GCATC | 3 cut(s) | 292, 303, 619 |
| MabI | ACCWGGT | 1 cut(s) | 477 |
| MaeIII | GTNAC | 3 cut(s) | 244, 707, 810 |
| MalI | GATC | 3 cut(s) | 148, 168, 700 |
| MboI | GATC | 3 cut(s) | 146, 166, 698 |
| MboII | GAAGA | 4 cut(s) | 176, 388, 598, 693 |
| MflI | RGATCY | 1 cut(s) | 698 |
| MhlI | GDGCHC | 1 cut(s) | 788 |
| MluCI | AATT | 3 cut(s) | 255, 425, 624 |
| MlyI | GAGTC | 1 cut(s) | 836 |
| MnlI | CCTC | 7 cut(s) | 271, 367, 372, 403, 406, 542, 765 |
| Mph1103I | ATGCAT | 1 cut(s) | 318 |
| MroXI | GAANNNNTTC | 1 cut(s) | 590 |
| MseI | TTAA | 1 cut(s) | 108 |
| MslI | CAYNNNNRTG | 2 cut(s) | 672, 693 |
| MspA1I | CMGCKG | 1 cut(s) | 824 |
| MspI | CCGG | 1 cut(s) | 28 |
| MspR9I | CCNGG | 2 cut(s) | 435, 479 |
| Mva1269I | GAATGC | 1 cut(s) | 523 |
| MvaI | CCWGG | 2 cut(s) | 435, 479 |
| NdeI | CATATG | 2 cut(s) | 264, 616 |
| NdeII | GATC | 3 cut(s) | 146, 166, 698 |
| NlaIII | CATG | 8 cut(s) | 77, 227, 320, 371, 513, 671, 692, 835 |
| NlaIV | GGNNCC | 2 cut(s) | 548, 786 |
| NmuCI | GTSAC | 1 cut(s) | 810 |
| NsiI | ATGCAT | 1 cut(s) | 318 |
| NspI | RCATGY | 1 cut(s) | 671 |
| PaeR7I | CTCGAG | 1 cut(s) | 747 |
| PctI | GAATGC | 1 cut(s) | 523 |
| PdmI | GAANNNNTTC | 1 cut(s) | 590 |
| PfeI | GAWTC | 4 cut(s) | 506, 569, 725, 733 |
| PflMI | CCANNNNNTGG | 3 cut(s) | 79, 440, 837 |
| PkrI | GCNGC | 1 cut(s) | 388 |
| PleI | GAGTC | 1 cut(s) | 835 |
| PpsI | GAGTC | 1 cut(s) | 835 |
| Psp6I | CCWGG | 2 cut(s) | 433, 477 |
| PspFI | CCCAGC | 1 cut(s) | 89 |
| PspGI | CCWGG | 2 cut(s) | 433, 477 |
| PspN4I | GGNNCC | 2 cut(s) | 548, 786 |
| PspOMI | GGGCCC | 1 cut(s) | 784 |
| PspPI | GGNCC | 4 cut(s) | 371, 415, 784, 785 |
| PstNI | CAGNNNCTG | 2 cut(s) | 83, 728 |
| PsuI | RGATCY | 1 cut(s) | 698 |
| PvuII | CAGCTG | 1 cut(s) | 824 |
| RsaI | GTAC | 3 cut(s) | 476, 656, 773 |
| RsaNI | GTAC | 3 cut(s) | 475, 655, 772 |
| RseI | CAYNNNNRTG | 2 cut(s) | 672, 693 |
| SaqAI | TTAA | 1 cut(s) | 108 |
| SatI | GCNGC | 1 cut(s) | 387 |
| Sau3AI | GATC | 3 cut(s) | 146, 166, 698 |
| Sau96I | GGNCC | 4 cut(s) | 371, 415, 784, 785 |
| SchI | GAGTC | 1 cut(s) | 836 |
| ScrFI | CCNGG | 2 cut(s) | 435, 479 |
| SduI | GDGCHC | 1 cut(s) | 788 |
| SetI | ASST | 8 cut(s) | 64, 154, 293, 483, 585, 765, 810, 826 |
| SexAI | ACCWGGT | 1 cut(s) | 477 |
| SfaNI | GCATC | 3 cut(s) | 292, 303, 619 |
| SfcI | CTRYAG | 2 cut(s) | 153, 173 |
| Sfr274I | CTCGAG | 1 cut(s) | 747 |
| SgrAI | CRCCGGYG | 1 cut(s) | 27 |
| SlaI | CTCGAG | 1 cut(s) | 747 |
| SmiMI | CAYNNNNRTG | 2 cut(s) | 672, 693 |
| SmlI | CTYRAG | 1 cut(s) | 747 |
| SmoI | CTYRAG | 1 cut(s) | 747 |
| Sse9I | AATT | 3 cut(s) | 255, 425, 624 |
| SspI | AATATT | 1 cut(s) | 44 |
| StyD4I | CCNGG | 2 cut(s) | 433, 477 |
| TaaI | ACNGT | 4 cut(s) | 235, 354, 543, 771 |
| TaqI | TCGA | 3 cut(s) | 58, 408, 748 |
| TasI | AATT | 3 cut(s) | 255, 425, 624 |
| TatI | WGTACW | 1 cut(s) | 654 |
| TfiI | GAWTC | 4 cut(s) | 506, 569, 725, 733 |
| Tru1I | TTAA | 1 cut(s) | 108 |
| Tru9I | TTAA | 1 cut(s) | 108 |
| TscAI | CASTG | 2 cut(s) | 84, 548 |
| TseFI | GTSAC | 1 cut(s) | 810 |
| TseI | GCWGC | 1 cut(s) | 386 |
| Tsp45I | GTSAC | 1 cut(s) | 810 |
| TspDTI | ATGAA | 7 cut(s) | 54, 55, 267, 363, 498, 583, 633 |
| TspGWI | ACGGA | 1 cut(s) | 105 |
| TspRI | CASTG | 2 cut(s) | 84, 548 |
| Van91I | CCANNNNNTGG | 3 cut(s) | 79, 440, 837 |
| XapI | RAATTY | 1 cut(s) | 255 |
| XceI | RCATGY | 1 cut(s) | 671 |
| XhoI | CTCGAG | 1 cut(s) | 747 |
| XmnI | GAANNNNTTC | 1 cut(s) | 590 |
| Zsp2I | ATGCAT | 1 cut(s) | 318 |