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| Enzyme | Recognition Site | Cut Count | Positions (bp) |
|---|---|---|---|
| AanI | TTATAA | 1 cut(s) | 1232 |
| AccB7I | CCANNNNNTGG | 1 cut(s) | 1223 |
| AccI | GTMKAC | 1 cut(s) | 451 |
| AccII | CGCG | 1 cut(s) | 925 |
| AciI | CCGC | 2 cut(s) | 391, 1463 |
| AclWI | GGATC | 2 cut(s) | 872, 1370 |
| AcoI | YGGCCR | 1 cut(s) | 1052 |
| AcsI | RAATTY | 3 cut(s) | 82, 333, 1262 |
| AcuI | CTGAAG | 2 cut(s) | 672, 702 |
| AdeI | CACNNNGTG | 1 cut(s) | 1170 |
| AfaI | GTAC | 6 cut(s) | 327, 576, 593, 703, 1018, 1452 |
| AfiI | CCNNNNNNNGG | 3 cut(s) | 1223, 1351, 1469 |
| AflII | CTTAAG | 1 cut(s) | 908 |
| AflIII | ACRYGT | 1 cut(s) | 1431 |
| AgsI | TTSAA | 7 cut(s) | 52, 301, 602, 740, 932, 1157, 1322 |
| AjiI | CACGTC | 1 cut(s) | 1434 |
| AluBI | AGCT | 5 cut(s) | 124, 341, 725, 1046, 1531 |
| AluI | AGCT | 5 cut(s) | 124, 341, 725, 1046, 1531 |
| Alw21I | GWGCWC | 3 cut(s) | 183, 1133, 1462 |
| Alw26I | GTCTC | 3 cut(s) | 274, 467, 952 |
| AlwI | GGATC | 2 cut(s) | 872, 1370 |
| AoxI | GGCC | 1 cut(s) | 1052 |
| ApeKI | GCWGC | 2 cut(s) | 722, 1357 |
| ApoI | RAATTY | 3 cut(s) | 82, 333, 1262 |
| AseI | ATTAAT | 1 cut(s) | 1092 |
| Asp700I | GAANNNNTTC | 1 cut(s) | 945 |
| AspS9I | GGNCC | 3 cut(s) | 371, 569, 616 |
| AsuHPI | GGTGA | 2 cut(s) | 521, 1610 |
| AsuII | TTCGAA | 1 cut(s) | 115 |
| AsuNHI | GCTAGC | 1 cut(s) | 1042 |
| AvaII | GGWCC | 3 cut(s) | 371, 569, 616 |
| Bbv12I | GWGCWC | 3 cut(s) | 183, 1133, 1462 |
| BbvI | GCAGC | 2 cut(s) | 734, 1344 |
| BccI | CCATC | 5 cut(s) | 100, 134, 417, 975, 1319 |
| BciVI | GTATCC | 1 cut(s) | 701 |
| BcoDI | GTCTC | 3 cut(s) | 274, 467, 952 |
| BfaI | CTAG | 7 cut(s) | 338, 488, 950, 1043, 1250, 1467, 1538 |
| BfmI | CTRYAG | 1 cut(s) | 867 |
| BfrI | CTTAAG | 1 cut(s) | 908 |
| BfuI | GTATCC | 1 cut(s) | 701 |
| BisI | GCNGC | 2 cut(s) | 723, 1358 |
| BlsI | GCNGC | 2 cut(s) | 724, 1359 |
| BmcAI | AGTACT | 1 cut(s) | 1018 |
| Bme18I | GGWCC | 3 cut(s) | 371, 569, 616 |
| BmgBI | CACGTC | 1 cut(s) | 1434 |
| BmgT120I | GGNCC | 3 cut(s) | 371, 569, 616 |
| BmiI | GGNNCC | 3 cut(s) | 145, 1100, 1272 |
| BmsI | GCATC | 2 cut(s) | 1369, 1400 |
| BmtI | GCTAGC | 1 cut(s) | 1046 |
| BoxI | GACNNNNGTC | 1 cut(s) | 1310 |
| Bpu14I | TTCGAA | 1 cut(s) | 115 |
| Bsa29I | ATCGAT | 2 cut(s) | 640, 847 |
| BsaAI | YACGTR | 1 cut(s) | 178 |
| BsaJI | CCNNGG | 2 cut(s) | 374, 881 |
| Bsc4I | CCNNNNNNNGG | 3 cut(s) | 1223, 1351, 1469 |
| Bse1I | ACTGG | 4 cut(s) | 709, 1312, 1514, 1600 |
| Bse3DI | GCAATG | 1 cut(s) | 757 |
| BseCI | ATCGAT | 2 cut(s) | 640, 847 |
| BseDI | CCNNGG | 2 cut(s) | 374, 881 |
| BseGI | GGATG | 2 cut(s) | 594, 986 |
| BseLI | CCNNNNNNNGG | 3 cut(s) | 1223, 1351, 1469 |
| BseMI | GCAATG | 1 cut(s) | 757 |
| BseMII | CTCAG | 1 cut(s) | 1113 |
| BseNI | ACTGG | 4 cut(s) | 709, 1312, 1514, 1600 |
| BseX3I | CGGCCG | 1 cut(s) | 1052 |
| BseXI | GCAGC | 2 cut(s) | 734, 1344 |
| Bsh1236I | CGCG | 1 cut(s) | 925 |
| Bsh1285I | CGRYCG | 1 cut(s) | 1055 |
| BshFI | GGCC | 1 cut(s) | 1054 |
| BshVI | ATCGAT | 2 cut(s) | 640, 847 |
| BsiEI | CGRYCG | 1 cut(s) | 1055 |
| BsiHKAI | GWGCWC | 3 cut(s) | 183, 1133, 1462 |
| BsiSI | CCGG | 1 cut(s) | 236 |
| BslFI | GGGAC | 2 cut(s) | 1057, 1318 |
| BslI | CCNNNNNNNGG | 3 cut(s) | 1223, 1351, 1469 |
| BsmAI | GTCTC | 3 cut(s) | 274, 467, 952 |
| BsmFI | GGGAC | 2 cut(s) | 1057, 1318 |
| BsnI | GGCC | 1 cut(s) | 1054 |
| Bsp119I | TTCGAA | 1 cut(s) | 115 |
| Bsp1286I | GDGCHC | 3 cut(s) | 183, 1133, 1462 |
| Bsp1407I | TGTACA | 1 cut(s) | 574 |
| Bsp143I | GATC | 3 cut(s) | 641, 877, 1375 |
| Bsp19I | CCATGG | 1 cut(s) | 881 |
| BspACI | CCGC | 2 cut(s) | 391, 1463 |
| BspANI | GGCC | 1 cut(s) | 1054 |
| BspCNI | CTCAG | 1 cut(s) | 1114 |
| BspDI | ATCGAT | 2 cut(s) | 640, 847 |
| BspFNI | CGCG | 1 cut(s) | 925 |
| BspHI | TCATGA | 1 cut(s) | 763 |
| BspLI | GGNNCC | 3 cut(s) | 145, 1100, 1272 |
| BspOI | GCTAGC | 1 cut(s) | 1046 |
| BspPI | GGATC | 2 cut(s) | 872, 1370 |
| BspQI | GCTCTTC | 2 cut(s) | 765, 1121 |
| BspT104I | TTCGAA | 1 cut(s) | 115 |
| BspTI | CTTAAG | 1 cut(s) | 908 |
| BsrDI | GCAATG | 1 cut(s) | 757 |
| BsrGI | TGTACA | 1 cut(s) | 574 |
| BsrI | ACTGG | 4 cut(s) | 709, 1312, 1514, 1600 |
| BssECI | CCNNGG | 2 cut(s) | 374, 881 |
| BssMI | GATC | 3 cut(s) | 641, 877, 1375 |
| BssT1I | CCWWGG | 2 cut(s) | 374, 881 |
| Bst4CI | ACNGT | 3 cut(s) | 242, 1142, 1278 |
| Bst6I | CTCTTC | 2 cut(s) | 765, 1121 |
| BstAFI | CTTAAG | 1 cut(s) | 908 |
| BstAUI | TGTACA | 1 cut(s) | 574 |
| BstBAI | YACGTR | 1 cut(s) | 178 |
| BstBI | TTCGAA | 1 cut(s) | 115 |
| BstC8I | GCNNGC | 2 cut(s) | 485, 1044 |
| BstDEI | CTNAG | 2 cut(s) | 1122, 1454 |
| BstDSI | CCRYGG | 1 cut(s) | 881 |
| BstF5I | GGATG | 2 cut(s) | 594, 986 |
| BstFNI | CGCG | 1 cut(s) | 925 |
| BstKTI | GATC | 3 cut(s) | 644, 880, 1378 |
| BstMAI | GTCTC | 3 cut(s) | 274, 467, 952 |
| BstMBI | GATC | 3 cut(s) | 641, 877, 1375 |
| BstMCI | CGRYCG | 1 cut(s) | 1055 |
| BstMWI | GCNNNNNNNGC | 2 cut(s) | 554, 1397 |
| BstNSI | RCATGY | 2 cut(s) | 487, 1448 |
| BstPAI | GACNNNNGTC | 1 cut(s) | 1310 |
| BstSFI | CTRYAG | 1 cut(s) | 867 |
| BstUI | CGCG | 1 cut(s) | 925 |
| BstV1I | GCAGC | 2 cut(s) | 734, 1344 |
| BstX2I | RGATCY | 2 cut(s) | 877, 1375 |
| BstYI | RGATCY | 2 cut(s) | 877, 1375 |
| BstZI | CGGCCG | 1 cut(s) | 1052 |
| Bsu15I | ATCGAT | 2 cut(s) | 640, 847 |
| BsuI | GTATCC | 1 cut(s) | 701 |
| BsuRI | GGCC | 1 cut(s) | 1054 |
| BsuTUI | ATCGAT | 2 cut(s) | 640, 847 |
| BtgI | CCRYGG | 1 cut(s) | 881 |
| BtrI | CACGTC | 1 cut(s) | 1434 |
| BtsCI | GGATG | 2 cut(s) | 594, 986 |
| BtsIMutI | CAGTG | 2 cut(s) | 1147, 1274 |
| Cac8I | GCNNGC | 2 cut(s) | 485, 1044 |
| CciI | TCATGA | 1 cut(s) | 763 |
| Cfr13I | GGNCC | 3 cut(s) | 371, 569, 616 |
| ClaI | ATCGAT | 2 cut(s) | 640, 847 |
| CseI | GACGC | 1 cut(s) | 914 |
| Csp6I | GTAC | 6 cut(s) | 326, 575, 592, 702, 1017, 1451 |
| CviAII | CATG | 5 cut(s) | 317, 484, 764, 882, 1445 |
| CviQI | GTAC | 6 cut(s) | 326, 575, 592, 702, 1017, 1451 |
| DdeI | CTNAG | 2 cut(s) | 1122, 1454 |
| DpnI | GATC | 3 cut(s) | 643, 879, 1377 |
| DpnII | GATC | 3 cut(s) | 641, 877, 1375 |
| DraI | TTTAAA | 2 cut(s) | 99, 351 |
| DraIII | CACNNNGTG | 1 cut(s) | 1170 |
| EaeI | YGGCCR | 1 cut(s) | 1052 |
| EagI | CGGCCG | 1 cut(s) | 1052 |
| Eam1104I | CTCTTC | 2 cut(s) | 765, 1121 |
| EarI | CTCTTC | 2 cut(s) | 765, 1121 |
| EclXI | CGGCCG | 1 cut(s) | 1052 |
| Eco130I | CCWWGG | 2 cut(s) | 374, 881 |
| Eco47I | GGWCC | 3 cut(s) | 371, 569, 616 |
| Eco52I | CGGCCG | 1 cut(s) | 1052 |
| Eco57I | CTGAAG | 2 cut(s) | 672, 702 |
| EcoO109I | RGGNCCY | 1 cut(s) | 616 |
| EcoT14I | CCWWGG | 2 cut(s) | 374, 881 |
| EcoT22I | ATGCAT | 2 cut(s) | 9, 485 |
| ErhI | CCWWGG | 2 cut(s) | 374, 881 |
| FaeI | CATG | 5 cut(s) | 320, 487, 767, 885, 1448 |
| FalI | AAGNNNNNCTT | 6 cut(s) | 62, 94, 345, 377, 543, 575 |
| FaqI | GGGAC | 2 cut(s) | 1057, 1318 |
| FatI | CATG | 5 cut(s) | 316, 483, 763, 881, 1444 |
| FauNDI | CATATG | 1 cut(s) | 963 |
| FblI | GTMKAC | 1 cut(s) | 451 |
| Fnu4HI | GCNGC | 2 cut(s) | 723, 1358 |
| FokI | GGATG | 2 cut(s) | 601, 993 |
| Fsp4HI | GCNGC | 2 cut(s) | 723, 1358 |
| FspBI | CTAG | 7 cut(s) | 338, 488, 950, 1043, 1250, 1467, 1538 |
| GluI | GCNGC | 2 cut(s) | 723, 1358 |
| HaeIII | GGCC | 1 cut(s) | 1054 |
| HapII | CCGG | 1 cut(s) | 236 |
| HgaI | GACGC | 1 cut(s) | 914 |
| Hin1II | CATG | 5 cut(s) | 320, 487, 767, 885, 1448 |
| HincII | GTYRAC | 1 cut(s) | 1342 |
| HindII | GTYRAC | 1 cut(s) | 1342 |
| HinfI | GANTC | 7 cut(s) | 112, 475, 538, 637, 920, 1487, 1601 |
| HpaI | GTTAAC | 1 cut(s) | 1342 |
| HpaII | CCGG | 1 cut(s) | 236 |
| HphI | GGTGA | 2 cut(s) | 521, 1610 |
| Hpy166II | GTNNAC | 4 cut(s) | 452, 529, 858, 1342 |
| Hpy188I | TCNGA | 3 cut(s) | 1027, 1206, 1260 |
| Hpy188III | TCNNGA | 6 cut(s) | 634, 650, 764, 929, 950, 1419 |
| Hpy8I | GTNNAC | 4 cut(s) | 452, 529, 858, 1342 |
| HpyAV | CCTTC | 5 cut(s) | 52, 607, 647, 776, 956 |
| HpyCH4III | ACNGT | 3 cut(s) | 242, 1142, 1278 |
| HpyCH4IV | ACGT | 2 cut(s) | 177, 1433 |
| HpyCH4V | TGCA | 9 cut(s) | 7, 260, 401, 483, 548, 895, 1184, 1360, 1391 |
| HpyF10VI | GCNNNNNNNGC | 2 cut(s) | 554, 1397 |
| HpyF3I | CTNAG | 2 cut(s) | 1122, 1454 |
| HpySE526I | ACGT | 2 cut(s) | 177, 1433 |
| Hsp92II | CATG | 5 cut(s) | 320, 487, 767, 885, 1448 |
| KspAI | GTTAAC | 1 cut(s) | 1342 |
| Kzo9I | GATC | 3 cut(s) | 641, 877, 1375 |
| LguI | GCTCTTC | 2 cut(s) | 765, 1121 |
| Lsp1109I | GCAGC | 2 cut(s) | 734, 1344 |
| LweI | GCATC | 2 cut(s) | 1369, 1400 |
| MaeI | CTAG | 7 cut(s) | 338, 488, 950, 1043, 1250, 1467, 1538 |
| MaeII | ACGT | 2 cut(s) | 177, 1433 |
| MaeIII | GTNAC | 5 cut(s) | 225, 303, 1427, 1591, 1598 |
| MalI | GATC | 3 cut(s) | 643, 879, 1377 |
| MboI | GATC | 3 cut(s) | 641, 877, 1375 |
| MfeI | CAATTG | 1 cut(s) | 151 |
| MflI | RGATCY | 2 cut(s) | 877, 1375 |
| MhlI | GDGCHC | 3 cut(s) | 183, 1133, 1462 |
| MlyI | GAGTC | 2 cut(s) | 469, 1595 |
| MnlI | CCTC | 7 cut(s) | 513, 547, 748, 1355, 1463, 1492, 1570 |
| Mph1103I | ATGCAT | 2 cut(s) | 9, 485 |
| MroXI | GAANNNNTTC | 1 cut(s) | 945 |
| MslI | CAYNNNNRTG | 1 cut(s) | 1539 |
| MspA1I | CMGCKG | 1 cut(s) | 725 |
| MspCI | CTTAAG | 1 cut(s) | 908 |
| MspI | CCGG | 1 cut(s) | 236 |
| MunI | CAATTG | 1 cut(s) | 151 |
| MvnI | CGCG | 1 cut(s) | 925 |
| MwoI | GCNNNNNNNGC | 2 cut(s) | 554, 1397 |
| NcoI | CCATGG | 1 cut(s) | 881 |
| NdeI | CATATG | 1 cut(s) | 963 |
| NdeII | GATC | 3 cut(s) | 641, 877, 1375 |
| NheI | GCTAGC | 1 cut(s) | 1042 |
| NlaIII | CATG | 5 cut(s) | 320, 487, 767, 885, 1448 |
| NlaIV | GGNNCC | 3 cut(s) | 145, 1100, 1272 |
| NmuCI | GTSAC | 3 cut(s) | 303, 1427, 1598 |
| NsiI | ATGCAT | 2 cut(s) | 9, 485 |
| NspI | RCATGY | 2 cut(s) | 487, 1448 |
| NspV | TTCGAA | 1 cut(s) | 115 |
| PaeI | GCATGC | 1 cut(s) | 487 |
| PagI | TCATGA | 1 cut(s) | 763 |
| PciSI | GCTCTTC | 2 cut(s) | 765, 1121 |
| PdmI | GAANNNNTTC | 1 cut(s) | 945 |
| PfeI | GAWTC | 5 cut(s) | 112, 538, 637, 920, 1487 |
| PflMI | CCANNNNNTGG | 1 cut(s) | 1223 |
| PkrI | GCNGC | 2 cut(s) | 724, 1359 |
| PleI | GAGTC | 2 cut(s) | 469, 1595 |
| PpsI | GAGTC | 2 cut(s) | 469, 1595 |
| Ppu21I | YACGTR | 1 cut(s) | 178 |
| PpuMI | RGGWCCY | 1 cut(s) | 616 |
| PshAI | GACNNNNGTC | 1 cut(s) | 1310 |
| PshBI | ATTAAT | 1 cut(s) | 1092 |
| PsiI | TTATAA | 1 cut(s) | 1232 |
| Psp5II | RGGWCCY | 1 cut(s) | 616 |
| PspN4I | GGNNCC | 3 cut(s) | 145, 1100, 1272 |
| PspPI | GGNCC | 3 cut(s) | 371, 569, 616 |
| PspPPI | RGGWCCY | 1 cut(s) | 616 |
| PsuI | RGATCY | 2 cut(s) | 877, 1375 |
| PvuII | CAGCTG | 1 cut(s) | 725 |
| RsaI | GTAC | 6 cut(s) | 327, 576, 593, 703, 1018, 1452 |
| RsaNI | GTAC | 6 cut(s) | 326, 575, 592, 702, 1017, 1451 |
| RseI | CAYNNNNRTG | 1 cut(s) | 1539 |
| SapI | GCTCTTC | 2 cut(s) | 765, 1121 |
| SatI | GCNGC | 2 cut(s) | 723, 1358 |
| Sau3AI | GATC | 3 cut(s) | 641, 877, 1375 |
| Sau96I | GGNCC | 3 cut(s) | 371, 569, 616 |
| ScaI | AGTACT | 1 cut(s) | 1018 |
| SchI | GAGTC | 2 cut(s) | 469, 1595 |
| SduI | GDGCHC | 3 cut(s) | 183, 1133, 1462 |
| SfaNI | GCATC | 2 cut(s) | 1369, 1400 |
| SfcI | CTRYAG | 1 cut(s) | 867 |
| SfuI | TTCGAA | 1 cut(s) | 115 |
| SinI | GGWCC | 3 cut(s) | 371, 569, 616 |
| SmiMI | CAYNNNNRTG | 1 cut(s) | 1539 |
| SmlI | CTYRAG | 1 cut(s) | 908 |
| SmoI | CTYRAG | 1 cut(s) | 908 |
| SphI | GCATGC | 1 cut(s) | 487 |
| SsiI | CCGC | 2 cut(s) | 391, 1463 |
| SspI | AATATT | 2 cut(s) | 204, 777 |
| SspMI | CTAG | 7 cut(s) | 338, 488, 950, 1043, 1250, 1467, 1538 |
| StyI | CCWWGG | 2 cut(s) | 374, 881 |
| TaaI | ACNGT | 3 cut(s) | 242, 1142, 1278 |
| TaiI | ACGT | 2 cut(s) | 180, 1436 |
| TaqI | TCGA | 5 cut(s) | 115, 640, 847, 1174, 1418 |
| TatI | WGTACW | 5 cut(s) | 325, 574, 701, 1016, 1450 |
| TfiI | GAWTC | 5 cut(s) | 112, 538, 637, 920, 1487 |
| TscAI | CASTG | 2 cut(s) | 1147, 1281 |
| TseFI | GTSAC | 3 cut(s) | 303, 1427, 1598 |
| TseI | GCWGC | 2 cut(s) | 722, 1357 |
| Tsp45I | GTSAC | 3 cut(s) | 303, 1427, 1598 |
| TspDTI | ATGAA | 9 cut(s) | 71, 530, 626, 752, 783, 954, 1075, 1097, 1566 |
| TspGWI | ACGGA | 2 cut(s) | 495, 1141 |
| TspRI | CASTG | 2 cut(s) | 1147, 1281 |
| Van91I | CCANNNNNTGG | 1 cut(s) | 1223 |
| Vha464I | CTTAAG | 1 cut(s) | 908 |
| VpaK11BI | GGWCC | 3 cut(s) | 371, 569, 616 |
| VspI | ATTAAT | 1 cut(s) | 1092 |
| XapI | RAATTY | 3 cut(s) | 82, 333, 1262 |
| XbaI | TCTAGA | 1 cut(s) | 949 |
| XceI | RCATGY | 2 cut(s) | 487, 1448 |
| XmiI | GTMKAC | 1 cut(s) | 451 |
| XmnI | GAANNNNTTC | 1 cut(s) | 945 |
| XspI | CTAG | 7 cut(s) | 338, 488, 950, 1043, 1250, 1467, 1538 |
| ZrmI | AGTACT | 1 cut(s) | 1018 |
| Zsp2I | ATGCAT | 2 cut(s) | 9, 485 |