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| Enzyme | Recognition Site | Cut Count | Positions (bp) |
|---|---|---|---|
| AclWI | GGATC | 1 cut(s) | 12 |
| AcsI | RAATTY | 2 cut(s) | 536, 587 |
| AcuI | CTGAAG | 2 cut(s) | 357, 618 |
| AfaI | GTAC | 1 cut(s) | 301 |
| AfeI | AGCGCT | 1 cut(s) | 649 |
| AflII | CTTAAG | 1 cut(s) | 29 |
| AflIII | ACRYGT | 1 cut(s) | 302 |
| AgsI | TTSAA | 6 cut(s) | 92, 264, 276, 515, 529, 567 |
| AhdI | GACNNNNNGTC | 1 cut(s) | 379 |
| AjnI | CCWGG | 1 cut(s) | 316 |
| AleI | CACNNNNGTG | 1 cut(s) | 429 |
| AloI | GAACNNNNNNTCC | 1 cut(s) | 28 |
| AluBI | AGCT | 3 cut(s) | 213, 272, 341 |
| AluI | AGCT | 3 cut(s) | 213, 272, 341 |
| AlwI | GGATC | 1 cut(s) | 12 |
| Aor51HI | AGCGCT | 1 cut(s) | 649 |
| ApoI | RAATTY | 2 cut(s) | 536, 587 |
| AspLEI | GCGC | 1 cut(s) | 650 |
| AspS9I | GGNCC | 1 cut(s) | 314 |
| AvaII | GGWCC | 1 cut(s) | 314 |
| BauI | CACGAG | 2 cut(s) | 69, 288 |
| BccI | CCATC | 1 cut(s) | 28 |
| BciT130I | CCWGG | 1 cut(s) | 318 |
| BciVI | GTATCC | 2 cut(s) | 483, 603 |
| BfaI | CTAG | 1 cut(s) | 123 |
| BfoI | RGCGCY | 1 cut(s) | 651 |
| BfrI | CTTAAG | 1 cut(s) | 29 |
| BfuI | GTATCC | 2 cut(s) | 483, 603 |
| Bme1390I | CCNGG | 1 cut(s) | 318 |
| Bme18I | GGWCC | 1 cut(s) | 314 |
| BmeRI | GACNNNNNGTC | 1 cut(s) | 379 |
| BmgT120I | GGNCC | 1 cut(s) | 314 |
| BmrFI | CCNGG | 1 cut(s) | 318 |
| BmrI | ACTGGG | 1 cut(s) | 423 |
| BmsI | GCATC | 1 cut(s) | 39 |
| BmuI | ACTGGG | 1 cut(s) | 423 |
| BpuEI | CTTGAG | 1 cut(s) | 74 |
| BsaAI | YACGTR | 1 cut(s) | 305 |
| Bse1I | ACTGG | 1 cut(s) | 429 |
| BseBI | CCWGG | 1 cut(s) | 318 |
| BseGI | GGATG | 3 cut(s) | 54, 400, 549 |
| BseMII | CTCAG | 1 cut(s) | 369 |
| BseNI | ACTGG | 1 cut(s) | 429 |
| BseYI | CCCAGC | 1 cut(s) | 153 |
| BsmI | GAATGC | 2 cut(s) | 460, 521 |
| Bsp143I | GATC | 2 cut(s) | 4, 65 |
| BspCNI | CTCAG | 1 cut(s) | 370 |
| BspPI | GGATC | 1 cut(s) | 12 |
| BspTI | CTTAAG | 1 cut(s) | 29 |
| BsrI | ACTGG | 1 cut(s) | 429 |
| BssMI | GATC | 2 cut(s) | 4, 65 |
| BssSI | CACGAG | 2 cut(s) | 69, 288 |
| Bst2BI | CACGAG | 2 cut(s) | 69, 288 |
| Bst2UI | CCWGG | 1 cut(s) | 318 |
| Bst4CI | ACNGT | 1 cut(s) | 482 |
| BstAFI | CTTAAG | 1 cut(s) | 29 |
| BstBAI | YACGTR | 1 cut(s) | 305 |
| BstDEI | CTNAG | 1 cut(s) | 378 |
| BstF5I | GGATG | 3 cut(s) | 54, 400, 549 |
| BstH2I | RGCGCY | 1 cut(s) | 651 |
| BstHHI | GCGC | 1 cut(s) | 650 |
| BstKTI | GATC | 2 cut(s) | 7, 68 |
| BstMBI | GATC | 2 cut(s) | 4, 65 |
| BstMWI | GCNNNNNNNGC | 3 cut(s) | 638, 647, 654 |
| BstNI | CCWGG | 1 cut(s) | 318 |
| BstSCI | CCNGG | 1 cut(s) | 316 |
| BstX2I | RGATCY | 1 cut(s) | 4 |
| BstYI | RGATCY | 1 cut(s) | 4 |
| BsuI | GTATCC | 2 cut(s) | 483, 603 |
| BtsCI | GGATG | 3 cut(s) | 54, 400, 549 |
| BtsIMutI | CAGTG | 1 cut(s) | 436 |
| CfoI | GCGC | 1 cut(s) | 650 |
| Cfr13I | GGNCC | 1 cut(s) | 314 |
| Csp6I | GTAC | 1 cut(s) | 300 |
| CviAII | CATG | 7 cut(s) | 45, 251, 329, 359, 407, 605, 658 |
| CviJI | RGCY | 5 cut(s) | 213, 272, 341, 466, 641 |
| CviKI_1 | RGCY | 5 cut(s) | 213, 272, 341, 466, 641 |
| CviQI | GTAC | 1 cut(s) | 300 |
| DdeI | CTNAG | 1 cut(s) | 378 |
| DpnI | GATC | 2 cut(s) | 6, 67 |
| DpnII | GATC | 2 cut(s) | 4, 65 |
| DriI | GACNNNNNGTC | 1 cut(s) | 379 |
| Eam1105I | GACNNNNNGTC | 1 cut(s) | 379 |
| Eco47I | GGWCC | 1 cut(s) | 314 |
| Eco47III | AGCGCT | 1 cut(s) | 649 |
| Eco57I | CTGAAG | 2 cut(s) | 357, 618 |
| EcoRII | CCWGG | 1 cut(s) | 316 |
| EcoT22I | ATGCAT | 1 cut(s) | 408 |
| FaeI | CATG | 7 cut(s) | 48, 254, 332, 362, 410, 608, 661 |
| FatI | CATG | 7 cut(s) | 44, 250, 328, 358, 406, 604, 657 |
| FauNDI | CATATG | 1 cut(s) | 390 |
| FokI | GGATG | 3 cut(s) | 61, 407, 556 |
| FspBI | CTAG | 1 cut(s) | 123 |
| GlaI | GCGC | 1 cut(s) | 649 |
| GsaI | CCCAGC | 1 cut(s) | 157 |
| HaeII | RGCGCY | 1 cut(s) | 651 |
| HhaI | GCGC | 1 cut(s) | 650 |
| Hin1II | CATG | 7 cut(s) | 48, 254, 332, 362, 410, 608, 661 |
| Hin6I | GCGC | 1 cut(s) | 648 |
| HinP1I | GCGC | 1 cut(s) | 648 |
| HinfI | GANTC | 5 cut(s) | 139, 284, 374, 380, 413 |
| Hpy166II | GTNNAC | 3 cut(s) | 302, 308, 438 |
| Hpy188I | TCNGA | 2 cut(s) | 379, 418 |
| Hpy188III | TCNNGA | 2 cut(s) | 69, 476 |
| Hpy8I | GTNNAC | 3 cut(s) | 302, 308, 438 |
| HpyAV | CCTTC | 4 cut(s) | 270, 593, 624, 631 |
| HpyCH4III | ACNGT | 1 cut(s) | 482 |
| HpyCH4IV | ACGT | 2 cut(s) | 304, 310 |
| HpyCH4V | TGCA | 4 cut(s) | 110, 388, 406, 458 |
| HpyF10VI | GCNNNNNNNGC | 3 cut(s) | 638, 647, 654 |
| HpyF3I | CTNAG | 1 cut(s) | 378 |
| HpySE526I | ACGT | 2 cut(s) | 304, 310 |
| Hsp92II | CATG | 7 cut(s) | 48, 254, 332, 362, 410, 608, 661 |
| HspAI | GCGC | 1 cut(s) | 648 |
| Kzo9I | GATC | 2 cut(s) | 4, 65 |
| LweI | GCATC | 1 cut(s) | 39 |
| MaeI | CTAG | 1 cut(s) | 123 |
| MaeII | ACGT | 2 cut(s) | 304, 310 |
| MalI | GATC | 2 cut(s) | 6, 67 |
| MboI | GATC | 2 cut(s) | 4, 65 |
| MboII | GAAGA | 2 cut(s) | 75, 609 |
| MflI | RGATCY | 1 cut(s) | 4 |
| MluCI | AATT | 5 cut(s) | 189, 238, 536, 573, 587 |
| MlyI | GAGTC | 3 cut(s) | 278, 368, 389 |
| MnlI | CCTC | 1 cut(s) | 49 |
| Mph1103I | ATGCAT | 1 cut(s) | 408 |
| MseI | TTAA | 3 cut(s) | 30, 101, 572 |
| MslI | CAYNNNNRTG | 2 cut(s) | 393, 429 |
| MspCI | CTTAAG | 1 cut(s) | 29 |
| MspR9I | CCNGG | 1 cut(s) | 318 |
| Mva1269I | GAATGC | 2 cut(s) | 460, 521 |
| MvaI | CCWGG | 1 cut(s) | 318 |
| MwoI | GCNNNNNNNGC | 3 cut(s) | 638, 647, 654 |
| NdeI | CATATG | 1 cut(s) | 390 |
| NdeII | GATC | 2 cut(s) | 4, 65 |
| NlaIII | CATG | 7 cut(s) | 48, 254, 332, 362, 410, 608, 661 |
| NsiI | ATGCAT | 1 cut(s) | 408 |
| OliI | CACNNNNGTG | 1 cut(s) | 429 |
| PctI | GAATGC | 2 cut(s) | 460, 521 |
| PfeI | GAWTC | 2 cut(s) | 139, 413 |
| PleI | GAGTC | 3 cut(s) | 278, 368, 388 |
| PpsI | GAGTC | 3 cut(s) | 278, 368, 388 |
| Ppu21I | YACGTR | 1 cut(s) | 305 |
| Psp6I | CCWGG | 1 cut(s) | 316 |
| PspFI | CCCAGC | 1 cut(s) | 153 |
| PspGI | CCWGG | 1 cut(s) | 316 |
| PspPI | GGNCC | 1 cut(s) | 314 |
| PsuI | RGATCY | 1 cut(s) | 4 |
| RsaI | GTAC | 1 cut(s) | 301 |
| RsaNI | GTAC | 1 cut(s) | 300 |
| RseI | CAYNNNNRTG | 2 cut(s) | 393, 429 |
| SaqAI | TTAA | 3 cut(s) | 30, 101, 572 |
| Sau3AI | GATC | 2 cut(s) | 4, 65 |
| Sau96I | GGNCC | 1 cut(s) | 314 |
| SchI | GAGTC | 3 cut(s) | 278, 368, 389 |
| ScrFI | CCNGG | 1 cut(s) | 318 |
| SfaNI | GCATC | 1 cut(s) | 39 |
| SinI | GGWCC | 1 cut(s) | 314 |
| SmiMI | CAYNNNNRTG | 2 cut(s) | 393, 429 |
| SmlI | CTYRAG | 2 cut(s) | 29, 53 |
| SmoI | CTYRAG | 2 cut(s) | 29, 53 |
| Sse9I | AATT | 5 cut(s) | 189, 238, 536, 573, 587 |
| SspMI | CTAG | 1 cut(s) | 123 |
| StyD4I | CCNGG | 1 cut(s) | 316 |
| TaaI | ACNGT | 1 cut(s) | 482 |
| TaiI | ACGT | 2 cut(s) | 307, 313 |
| TasI | AATT | 5 cut(s) | 189, 238, 536, 573, 587 |
| TatI | WGTACW | 1 cut(s) | 299 |
| TfiI | GAWTC | 2 cut(s) | 139, 413 |
| Tru1I | TTAA | 3 cut(s) | 30, 101, 572 |
| Tru9I | TTAA | 3 cut(s) | 30, 101, 572 |
| TscAI | CASTG | 1 cut(s) | 436 |
| TspDTI | ATGAA | 4 cut(s) | 93, 345, 369, 375 |
| TspRI | CASTG | 1 cut(s) | 436 |
| Vha464I | CTTAAG | 1 cut(s) | 29 |
| VpaK11BI | GGWCC | 1 cut(s) | 314 |
| XapI | RAATTY | 2 cut(s) | 536, 587 |
| XspI | CTAG | 1 cut(s) | 123 |
| Zsp2I | ATGCAT | 1 cut(s) | 408 |