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| Enzyme | Recognition Site | Cut Count | Positions (bp) |
|---|---|---|---|
| AanI | TTATAA | 1 cut(s) | 1404 |
| AasI | GACNNNNNNGTC | 1 cut(s) | 79 |
| AccIII | TCCGGA | 1 cut(s) | 907 |
| AcsI | RAATTY | 1 cut(s) | 1106 |
| AcuI | CTGAAG | 2 cut(s) | 251, 960 |
| AdeI | CACNNNGTG | 1 cut(s) | 402 |
| AfaI | GTAC | 3 cut(s) | 377, 541, 662 |
| AfeI | AGCGCT | 1 cut(s) | 929 |
| AfiI | CCNNNNNNNGG | 2 cut(s) | 1031, 1341 |
| AflII | CTTAAG | 1 cut(s) | 272 |
| AflIII | ACRYGT | 1 cut(s) | 1011 |
| AgsI | TTSAA | 6 cut(s) | 136, 457, 573, 1111, 1144, 1366 |
| AjnI | CCWGG | 3 cut(s) | 709, 1243, 1748 |
| AleI | CACNNNNGTG | 2 cut(s) | 1439, 1478 |
| AluBI | AGCT | 7 cut(s) | 271, 1076, 1116, 1277, 1317, 1348, 1597 |
| AluI | AGCT | 7 cut(s) | 271, 1076, 1116, 1277, 1317, 1348, 1597 |
| Alw26I | GTCTC | 3 cut(s) | 557, 1053, 1546 |
| Aor13HI | TCCGGA | 1 cut(s) | 907 |
| Aor51HI | AGCGCT | 1 cut(s) | 929 |
| AoxI | GGCC | 1 cut(s) | 1022 |
| ApeKI | GCWGC | 2 cut(s) | 236, 1186 |
| ApoI | RAATTY | 1 cut(s) | 1106 |
| AspLEI | GCGC | 1 cut(s) | 930 |
| AspS9I | GGNCC | 3 cut(s) | 113, 370, 1539 |
| AsuHPI | GGTGA | 3 cut(s) | 91, 668, 1453 |
| AsuII | TTCGAA | 1 cut(s) | 1093 |
| AvaII | GGWCC | 3 cut(s) | 113, 370, 1539 |
| BaeI | ACNNNNGTAYC | 2 cut(s) | 689, 722 |
| BauI | CACGAG | 1 cut(s) | 727 |
| BbsI | GAAGAC | 1 cut(s) | 1524 |
| BbvI | GCAGC | 2 cut(s) | 223, 1173 |
| BccI | CCATC | 5 cut(s) | 271, 629, 683, 727, 1720 |
| BciT130I | CCWGG | 3 cut(s) | 711, 1245, 1750 |
| BciVI | GTATCC | 1 cut(s) | 717 |
| BcoDI | GTCTC | 3 cut(s) | 557, 1053, 1546 |
| BfaI | CTAG | 3 cut(s) | 57, 366, 1278 |
| BfmI | CTRYAG | 2 cut(s) | 504, 1524 |
| BfoI | RGCGCY | 1 cut(s) | 931 |
| BfrI | CTTAAG | 1 cut(s) | 272 |
| BfuI | GTATCC | 1 cut(s) | 717 |
| BglII | AGATCT | 1 cut(s) | 323 |
| BisI | GCNGC | 2 cut(s) | 237, 1187 |
| BlpI | GCTNAGC | 1 cut(s) | 924 |
| BlsI | GCNGC | 2 cut(s) | 238, 1188 |
| BmcAI | AGTACT | 1 cut(s) | 541 |
| Bme1390I | CCNGG | 3 cut(s) | 711, 1245, 1750 |
| Bme18I | GGWCC | 3 cut(s) | 113, 370, 1539 |
| BmgT120I | GGNCC | 3 cut(s) | 113, 370, 1539 |
| BmiI | GGNNCC | 2 cut(s) | 371, 372 |
| BmrFI | CCNGG | 3 cut(s) | 711, 1245, 1750 |
| BmrI | ACTGGG | 1 cut(s) | 1399 |
| BmsI | GCATC | 2 cut(s) | 282, 1481 |
| BmuI | ACTGGG | 1 cut(s) | 1399 |
| BpiI | GAAGAC | 1 cut(s) | 1524 |
| BpmI | CTGGAG | 1 cut(s) | 274 |
| Bpu1102I | GCTNAGC | 1 cut(s) | 924 |
| Bpu14I | TTCGAA | 1 cut(s) | 1093 |
| BpuEI | CTTGAG | 1 cut(s) | 1290 |
| BsaAI | YACGTR | 2 cut(s) | 1014, 1513 |
| BsaBI | GATNNNNATC | 1 cut(s) | 645 |
| BsaJI | CCNNGG | 4 cut(s) | 174, 354, 1244, 1749 |
| BsaWI | WCCGGW | 3 cut(s) | 653, 847, 907 |
| Bsc4I | CCNNNNNNNGG | 2 cut(s) | 1031, 1341 |
| Bse1I | ACTGG | 3 cut(s) | 116, 670, 1394 |
| Bse3DI | GCAATG | 2 cut(s) | 918, 933 |
| Bse8I | GATNNNNATC | 1 cut(s) | 645 |
| BseAI | TCCGGA | 1 cut(s) | 907 |
| BseBI | CCWGG | 3 cut(s) | 711, 1245, 1750 |
| BseDI | CCNNGG | 4 cut(s) | 174, 354, 1244, 1749 |
| BseGI | GGATG | 5 cut(s) | 297, 493, 646, 738, 1075 |
| BseJI | GATNNNNATC | 1 cut(s) | 645 |
| BseLI | CCNNNNNNNGG | 2 cut(s) | 1031, 1341 |
| BseMI | GCAATG | 2 cut(s) | 918, 933 |
| BseMII | CTCAG | 4 cut(s) | 534, 810, 915, 1206 |
| BseNI | ACTGG | 3 cut(s) | 116, 670, 1394 |
| BseXI | GCAGC | 2 cut(s) | 223, 1173 |
| BshFI | GGCC | 1 cut(s) | 1024 |
| BsiSI | CCGG | 3 cut(s) | 654, 848, 908 |
| BslFI | GGGAC | 3 cut(s) | 383, 1196, 1616 |
| BslI | CCNNNNNNNGG | 2 cut(s) | 1031, 1341 |
| BsmAI | GTCTC | 3 cut(s) | 557, 1053, 1546 |
| BsmFI | GGGAC | 3 cut(s) | 383, 1196, 1616 |
| BsnI | GGCC | 1 cut(s) | 1024 |
| Bsp119I | TTCGAA | 1 cut(s) | 1093 |
| Bsp13I | TCCGGA | 1 cut(s) | 907 |
| Bsp143I | GATC | 3 cut(s) | 68, 151, 323 |
| Bsp1720I | GCTNAGC | 1 cut(s) | 924 |
| BspANI | GGCC | 1 cut(s) | 1024 |
| BspCNI | CTCAG | 4 cut(s) | 535, 809, 916, 1207 |
| BspEI | TCCGGA | 1 cut(s) | 907 |
| BspLI | GGNNCC | 2 cut(s) | 371, 372 |
| BspT104I | TTCGAA | 1 cut(s) | 1093 |
| BspTI | CTTAAG | 1 cut(s) | 272 |
| BsrDI | GCAATG | 2 cut(s) | 918, 933 |
| BsrI | ACTGG | 3 cut(s) | 116, 670, 1394 |
| BssECI | CCNNGG | 4 cut(s) | 174, 354, 1244, 1749 |
| BssMI | GATC | 3 cut(s) | 68, 151, 323 |
| BssSI | CACGAG | 1 cut(s) | 727 |
| BssT1I | CCWWGG | 2 cut(s) | 174, 354 |
| Bst2BI | CACGAG | 1 cut(s) | 727 |
| Bst2UI | CCWGG | 3 cut(s) | 711, 1245, 1750 |
| Bst4CI | ACNGT | 7 cut(s) | 41, 76, 106, 988, 1042, 1653, 1768 |
| Bst6I | CTCTTC | 4 cut(s) | 28, 936, 1139, 1731 |
| BstAFI | CTTAAG | 1 cut(s) | 272 |
| BstBAI | YACGTR | 2 cut(s) | 1014, 1513 |
| BstBI | TTCGAA | 1 cut(s) | 1093 |
| BstC8I | GCNNGC | 4 cut(s) | 143, 297, 789, 1233 |
| BstDEI | CTNAG | 7 cut(s) | 543, 796, 924, 1179, 1190, 1215, 1284 |
| BstF5I | GGATG | 5 cut(s) | 297, 493, 646, 738, 1075 |
| BstH2I | RGCGCY | 1 cut(s) | 931 |
| BstHHI | GCGC | 1 cut(s) | 930 |
| BstKTI | GATC | 3 cut(s) | 71, 154, 326 |
| BstMAI | GTCTC | 3 cut(s) | 557, 1053, 1546 |
| BstMBI | GATC | 3 cut(s) | 68, 151, 323 |
| BstMWI | GCNNNNNNNGC | 2 cut(s) | 815, 944 |
| BstNI | CCWGG | 3 cut(s) | 711, 1245, 1750 |
| BstNSI | RCATGY | 1 cut(s) | 1695 |
| BstSCI | CCNGG | 3 cut(s) | 709, 1243, 1748 |
| BstSFI | CTRYAG | 2 cut(s) | 504, 1524 |
| BstV1I | GCAGC | 2 cut(s) | 223, 1173 |
| BstV2I | GAAGAC | 1 cut(s) | 1524 |
| BstX2I | RGATCY | 1 cut(s) | 323 |
| BstYI | RGATCY | 1 cut(s) | 323 |
| BsuI | GTATCC | 1 cut(s) | 717 |
| BsuRI | GGCC | 1 cut(s) | 1024 |
| BtsCI | GGATG | 5 cut(s) | 297, 493, 646, 738, 1075 |
| BtsIMutI | CAGTG | 2 cut(s) | 663, 1098 |
| Cac8I | GCNNGC | 4 cut(s) | 143, 297, 789, 1233 |
| CfoI | GCGC | 1 cut(s) | 930 |
| Cfr13I | GGNCC | 3 cut(s) | 113, 370, 1539 |
| CseI | GACGC | 1 cut(s) | 872 |
| Csp6I | GTAC | 3 cut(s) | 376, 540, 661 |
| CspCI | CAANNNNNGTGG | 4 cut(s) | 91, 126, 368, 403 |
| CviAII | CATG | 8 cut(s) | 288, 494, 582, 601, 1132, 1297, 1312, 1692 |
| CviQI | GTAC | 3 cut(s) | 376, 540, 661 |
| DdeI | CTNAG | 7 cut(s) | 543, 796, 924, 1179, 1190, 1215, 1284 |
| DpnI | GATC | 3 cut(s) | 70, 153, 325 |
| DpnII | GATC | 3 cut(s) | 68, 151, 323 |
| DraIII | CACNNNGTG | 1 cut(s) | 402 |
| DrdI | GACNNNNNNGTC | 1 cut(s) | 79 |
| DseDI | GACNNNNNNGTC | 1 cut(s) | 79 |
| Eam1104I | CTCTTC | 4 cut(s) | 28, 936, 1139, 1731 |
| EarI | CTCTTC | 4 cut(s) | 28, 936, 1139, 1731 |
| Eco130I | CCWWGG | 2 cut(s) | 174, 354 |
| Eco147I | AGGCCT | 1 cut(s) | 1024 |
| Eco47I | GGWCC | 3 cut(s) | 113, 370, 1539 |
| Eco47III | AGCGCT | 1 cut(s) | 929 |
| Eco57I | CTGAAG | 2 cut(s) | 251, 960 |
| EcoO109I | RGGNCCY | 1 cut(s) | 370 |
| EcoRI | GAATTC | 1 cut(s) | 1106 |
| EcoRII | CCWGG | 3 cut(s) | 709, 1243, 1748 |
| EcoT14I | CCWWGG | 2 cut(s) | 174, 354 |
| ErhI | CCWWGG | 2 cut(s) | 174, 354 |
| FaeI | CATG | 8 cut(s) | 291, 497, 585, 604, 1135, 1300, 1315, 1695 |
| FaqI | GGGAC | 3 cut(s) | 383, 1196, 1616 |
| FatI | CATG | 8 cut(s) | 287, 493, 581, 600, 1131, 1296, 1311, 1691 |
| FauNDI | CATATG | 1 cut(s) | 482 |
| Fnu4HI | GCNGC | 2 cut(s) | 237, 1187 |
| FokI | GGATG | 5 cut(s) | 304, 500, 653, 745, 1082 |
| Fsp4HI | GCNGC | 2 cut(s) | 237, 1187 |
| FspBI | CTAG | 3 cut(s) | 57, 366, 1278 |
| GlaI | GCGC | 1 cut(s) | 929 |
| GluI | GCNGC | 2 cut(s) | 237, 1187 |
| GsuI | CTGGAG | 1 cut(s) | 274 |
| HaeII | RGCGCY | 1 cut(s) | 931 |
| HaeIII | GGCC | 1 cut(s) | 1024 |
| HapII | CCGG | 3 cut(s) | 654, 848, 908 |
| HgaI | GACGC | 1 cut(s) | 872 |
| HhaI | GCGC | 1 cut(s) | 930 |
| Hin1II | CATG | 8 cut(s) | 291, 497, 585, 604, 1135, 1300, 1315, 1695 |
| Hin6I | GCGC | 1 cut(s) | 928 |
| HinP1I | GCGC | 1 cut(s) | 928 |
| HincII | GTYRAC | 1 cut(s) | 1632 |
| HindII | GTYRAC | 1 cut(s) | 1632 |
| HinfI | GANTC | 9 cut(s) | 442, 518, 524, 569, 994, 1046, 1554, 1583, 1759 |
| HpaII | CCGG | 3 cut(s) | 654, 848, 908 |
| HphI | GGTGA | 3 cut(s) | 91, 668, 1453 |
| Hpy166II | GTNNAC | 4 cut(s) | 663, 1196, 1444, 1632 |
| Hpy188I | TCNGA | 7 cut(s) | 37, 517, 523, 529, 628, 799, 862 |
| Hpy188III | TCNNGA | 6 cut(s) | 167, 218, 253, 908, 1124, 1307 |
| Hpy8I | GTNNAC | 4 cut(s) | 663, 1196, 1444, 1632 |
| Hpy99I | CGWCG | 4 cut(s) | 76, 110, 866, 980 |
| HpyAV | CCTTC | 4 cut(s) | 5, 300, 905, 1635 |
| HpyCH4III | ACNGT | 7 cut(s) | 41, 76, 106, 988, 1042, 1653, 1768 |
| HpyCH4IV | ACGT | 2 cut(s) | 1013, 1512 |
| HpyCH4V | TGCA | 7 cut(s) | 239, 295, 396, 622, 717, 879, 918 |
| HpyF10VI | GCNNNNNNNGC | 2 cut(s) | 815, 944 |
| HpyF3I | CTNAG | 7 cut(s) | 543, 796, 924, 1179, 1190, 1215, 1284 |
| HpySE526I | ACGT | 2 cut(s) | 1013, 1512 |
| Hsp92II | CATG | 8 cut(s) | 291, 497, 585, 604, 1135, 1300, 1315, 1695 |
| HspAI | GCGC | 1 cut(s) | 928 |
| KflI | GGGWCCC | 1 cut(s) | 370 |
| Kpn2I | TCCGGA | 1 cut(s) | 907 |
| Kzo9I | GATC | 3 cut(s) | 68, 151, 323 |
| LmnI | GCTCC | 1 cut(s) | 1345 |
| Lsp1109I | GCAGC | 2 cut(s) | 223, 1173 |
| LweI | GCATC | 2 cut(s) | 282, 1481 |
| MaeI | CTAG | 3 cut(s) | 57, 366, 1278 |
| MaeII | ACGT | 2 cut(s) | 1013, 1512 |
| MaeIII | GTNAC | 5 cut(s) | 97, 596, 1300, 1385, 1687 |
| MalI | GATC | 3 cut(s) | 70, 153, 325 |
| MboI | GATC | 3 cut(s) | 68, 151, 323 |
| MboII | GAAGA | 9 cut(s) | 15, 146, 566, 818, 953, 1156, 1500, 1529, 1748 |
| MflI | RGATCY | 1 cut(s) | 323 |
| MluCI | AATT | 3 cut(s) | 511, 967, 1106 |
| MlyI | GAGTC | 4 cut(s) | 436, 1055, 1548, 1768 |
| MmeI | TCCRAC | 2 cut(s) | 60, 885 |
| MroI | TCCGGA | 1 cut(s) | 907 |
| MslI | CAYNNNNRTG | 5 cut(s) | 731, 764, 1083, 1439, 1478 |
| MspCI | CTTAAG | 1 cut(s) | 272 |
| MspI | CCGG | 3 cut(s) | 654, 848, 908 |
| MspR9I | CCNGG | 3 cut(s) | 711, 1245, 1750 |
| MvaI | CCWGG | 3 cut(s) | 711, 1245, 1750 |
| MwoI | GCNNNNNNNGC | 2 cut(s) | 815, 944 |
| NdeI | CATATG | 1 cut(s) | 482 |
| NdeII | GATC | 3 cut(s) | 68, 151, 323 |
| NlaIII | CATG | 8 cut(s) | 291, 497, 585, 604, 1135, 1300, 1315, 1695 |
| NlaIV | GGNNCC | 2 cut(s) | 371, 372 |
| NmeAIII | GCCGAG | 1 cut(s) | 844 |
| NmuCI | GTSAC | 3 cut(s) | 97, 596, 1385 |
| NspI | RCATGY | 1 cut(s) | 1695 |
| NspV | TTCGAA | 1 cut(s) | 1093 |
| OliI | CACNNNNGTG | 2 cut(s) | 1439, 1478 |
| PceI | AGGCCT | 1 cut(s) | 1024 |
| PfeI | GAWTC | 5 cut(s) | 518, 524, 569, 994, 1583 |
| PkrI | GCNGC | 2 cut(s) | 238, 1188 |
| PleI | GAGTC | 4 cut(s) | 436, 1054, 1548, 1767 |
| PpsI | GAGTC | 4 cut(s) | 436, 1054, 1548, 1767 |
| Ppu21I | YACGTR | 2 cut(s) | 1014, 1513 |
| PpuMI | RGGWCCY | 1 cut(s) | 370 |
| PsiI | TTATAA | 1 cut(s) | 1404 |
| Psp5II | RGGWCCY | 1 cut(s) | 370 |
| Psp6I | CCWGG | 3 cut(s) | 709, 1243, 1748 |
| PspGI | CCWGG | 3 cut(s) | 709, 1243, 1748 |
| PspN4I | GGNNCC | 2 cut(s) | 371, 372 |
| PspPI | GGNCC | 3 cut(s) | 113, 370, 1539 |
| PspPPI | RGGWCCY | 1 cut(s) | 370 |
| PsuI | RGATCY | 1 cut(s) | 323 |
| RsaI | GTAC | 3 cut(s) | 377, 541, 662 |
| RsaNI | GTAC | 3 cut(s) | 376, 540, 661 |
| RseI | CAYNNNNRTG | 5 cut(s) | 731, 764, 1083, 1439, 1478 |
| SatI | GCNGC | 2 cut(s) | 237, 1187 |
| Sau3AI | GATC | 3 cut(s) | 68, 151, 323 |
| Sau96I | GGNCC | 3 cut(s) | 113, 370, 1539 |
| ScaI | AGTACT | 1 cut(s) | 541 |
| SchI | GAGTC | 4 cut(s) | 436, 1055, 1548, 1768 |
| ScrFI | CCNGG | 3 cut(s) | 711, 1245, 1750 |
| SfaNI | GCATC | 2 cut(s) | 282, 1481 |
| SfcI | CTRYAG | 2 cut(s) | 504, 1524 |
| SfuI | TTCGAA | 1 cut(s) | 1093 |
| SinI | GGWCC | 3 cut(s) | 113, 370, 1539 |
| SmiMI | CAYNNNNRTG | 5 cut(s) | 731, 764, 1083, 1439, 1478 |
| SmlI | CTYRAG | 2 cut(s) | 272, 1305 |
| SmoI | CTYRAG | 2 cut(s) | 272, 1305 |
| Sse9I | AATT | 3 cut(s) | 511, 967, 1106 |
| SseBI | AGGCCT | 1 cut(s) | 1024 |
| SspI | AATATT | 1 cut(s) | 1506 |
| SspMI | CTAG | 3 cut(s) | 57, 366, 1278 |
| StuI | AGGCCT | 1 cut(s) | 1024 |
| StyD4I | CCNGG | 3 cut(s) | 709, 1243, 1748 |
| StyI | CCWWGG | 2 cut(s) | 174, 354 |
| TaaI | ACNGT | 7 cut(s) | 41, 76, 106, 988, 1042, 1653, 1768 |
| TaiI | ACGT | 2 cut(s) | 1016, 1515 |
| TaqI | TCGA | 4 cut(s) | 71, 975, 1093, 1259 |
| TasI | AATT | 3 cut(s) | 511, 967, 1106 |
| TatI | WGTACW | 2 cut(s) | 539, 660 |
| TfiI | GAWTC | 5 cut(s) | 518, 524, 569, 994, 1583 |
| TscAI | CASTG | 2 cut(s) | 670, 1105 |
| TseFI | GTSAC | 3 cut(s) | 97, 596, 1385 |
| TseI | GCWGC | 2 cut(s) | 236, 1186 |
| Tsp45I | GTSAC | 3 cut(s) | 97, 596, 1385 |
| TspGWI | ACGGA | 1 cut(s) | 1531 |
| TspRI | CASTG | 2 cut(s) | 670, 1105 |
| Vha464I | CTTAAG | 1 cut(s) | 272 |
| VpaK11BI | GGWCC | 3 cut(s) | 113, 370, 1539 |
| XapI | RAATTY | 1 cut(s) | 1106 |
| XceI | RCATGY | 1 cut(s) | 1695 |
| XcmI | CCANNNNNNNNNTGG | 1 cut(s) | 181 |
| XspI | CTAG | 3 cut(s) | 57, 366, 1278 |
| ZrmI | AGTACT | 1 cut(s) | 541 |