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| Enzyme | Recognition Site | Cut Count | Positions (bp) |
|---|---|---|---|
| AanI | TTATAA | 1 cut(s) | 341 |
| AciI | CCGC | 2 cut(s) | 367, 572 |
| AcoI | YGGCCR | 1 cut(s) | 161 |
| AcsI | RAATTY | 2 cut(s) | 110, 425 |
| AdeI | CACNNNGTG | 1 cut(s) | 279 |
| AfaI | GTAC | 2 cut(s) | 79, 561 |
| AfiI | CCNNNNNNNGG | 2 cut(s) | 376, 578 |
| AgsI | TTSAA | 5 cut(s) | 123, 218, 266, 431, 528 |
| AjuI | GAANNNNNNNTTGG | 2 cut(s) | 363, 395 |
| AluBI | AGCT | 2 cut(s) | 98, 637 |
| AluI | AGCT | 2 cut(s) | 98, 637 |
| Alw21I | GWGCWC | 1 cut(s) | 242 |
| Alw26I | GTCTC | 2 cut(s) | 61, 264 |
| AoxI | GGCC | 2 cut(s) | 161, 225 |
| ApoI | RAATTY | 2 cut(s) | 110, 425 |
| Asp700I | GAANNNNTTC | 1 cut(s) | 54 |
| AspS9I | GGNCC | 1 cut(s) | 414 |
| AsuHPI | GGTGA | 1 cut(s) | 128 |
| AsuII | TTCGAA | 1 cut(s) | 545 |
| AvaII | GGWCC | 1 cut(s) | 414 |
| Bbv12I | GWGCWC | 1 cut(s) | 242 |
| BccI | CCATC | 3 cut(s) | 84, 307, 428 |
| BciVI | GTATCC | 1 cut(s) | 334 |
| BcoDI | GTCTC | 2 cut(s) | 61, 264 |
| BfaI | CTAG | 2 cut(s) | 359, 638 |
| BfuI | GTATCC | 1 cut(s) | 334 |
| BmcAI | AGTACT | 1 cut(s) | 79 |
| Bme18I | GGWCC | 1 cut(s) | 414 |
| BmgT120I | GGNCC | 1 cut(s) | 414 |
| BmiI | GGNNCC | 2 cut(s) | 381, 415 |
| BmsI | GCATC | 1 cut(s) | 43 |
| BoxI | GACNNNNGTC | 1 cut(s) | 419 |
| Bpu14I | TTCGAA | 1 cut(s) | 545 |
| BpuEI | CTTGAG | 1 cut(s) | 59 |
| BsaBI | GATNNNNATC | 2 cut(s) | 33, 483 |
| Bsc4I | CCNNNNNNNGG | 2 cut(s) | 376, 578 |
| Bse1I | ACTGG | 3 cut(s) | 228, 417, 620 |
| Bse8I | GATNNNNATC | 2 cut(s) | 33, 483 |
| BseGI | GGATG | 2 cut(s) | 95, 661 |
| BseJI | GATNNNNATC | 2 cut(s) | 33, 483 |
| BseLI | CCNNNNNNNGG | 2 cut(s) | 376, 578 |
| BseMII | CTCAG | 1 cut(s) | 213 |
| BseNI | ACTGG | 3 cut(s) | 228, 417, 620 |
| BshFI | GGCC | 2 cut(s) | 163, 227 |
| BsiHKAI | GWGCWC | 1 cut(s) | 242 |
| BslFI | GGGAC | 1 cut(s) | 427 |
| BslI | CCNNNNNNNGG | 2 cut(s) | 376, 578 |
| BsmAI | GTCTC | 2 cut(s) | 61, 264 |
| BsmFI | GGGAC | 1 cut(s) | 427 |
| BsnI | GGCC | 2 cut(s) | 163, 227 |
| Bsp119I | TTCGAA | 1 cut(s) | 545 |
| Bsp1286I | GDGCHC | 1 cut(s) | 242 |
| Bsp143I | GATC | 1 cut(s) | 484 |
| BspACI | CCGC | 2 cut(s) | 367, 572 |
| BspANI | GGCC | 2 cut(s) | 163, 227 |
| BspCNI | CTCAG | 1 cut(s) | 214 |
| BspLI | GGNNCC | 2 cut(s) | 381, 415 |
| BspQI | GCTCTTC | 1 cut(s) | 230 |
| BspT104I | TTCGAA | 1 cut(s) | 545 |
| BsrI | ACTGG | 3 cut(s) | 228, 417, 620 |
| BssMI | GATC | 1 cut(s) | 484 |
| Bst6I | CTCTTC | 1 cut(s) | 230 |
| BstBI | TTCGAA | 1 cut(s) | 545 |
| BstDEI | CTNAG | 2 cut(s) | 74, 222 |
| BstF5I | GGATG | 2 cut(s) | 95, 661 |
| BstKTI | GATC | 1 cut(s) | 487 |
| BstMAI | GTCTC | 2 cut(s) | 61, 264 |
| BstMBI | GATC | 1 cut(s) | 484 |
| BstMWI | GCNNNNNNNGC | 1 cut(s) | 40 |
| BstNSI | RCATGY | 2 cut(s) | 557, 619 |
| BstPAI | GACNNNNGTC | 1 cut(s) | 419 |
| BsuI | GTATCC | 1 cut(s) | 334 |
| BsuRI | GGCC | 2 cut(s) | 163, 227 |
| BtsCI | GGATG | 2 cut(s) | 95, 661 |
| BtsIMutI | CAGTG | 2 cut(s) | 235, 424 |
| Cfr13I | GGNCC | 1 cut(s) | 414 |
| Csp6I | GTAC | 2 cut(s) | 78, 560 |
| CviAII | CATG | 2 cut(s) | 554, 616 |
| CviJI | RGCY | 6 cut(s) | 98, 163, 192, 227, 404, 637 |
| CviKI_1 | RGCY | 6 cut(s) | 98, 163, 192, 227, 404, 637 |
| CviQI | GTAC | 2 cut(s) | 78, 560 |
| DdeI | CTNAG | 2 cut(s) | 74, 222 |
| DpnI | GATC | 1 cut(s) | 486 |
| DpnII | GATC | 1 cut(s) | 484 |
| DraIII | CACNNNGTG | 1 cut(s) | 279 |
| EaeI | YGGCCR | 1 cut(s) | 161 |
| Eam1104I | CTCTTC | 1 cut(s) | 230 |
| EarI | CTCTTC | 1 cut(s) | 230 |
| Eco47I | GGWCC | 1 cut(s) | 414 |
| EcoT22I | ATGCAT | 1 cut(s) | 6 |
| FaeI | CATG | 2 cut(s) | 557, 619 |
| FalI | AAGNNNNNCTT | 2 cut(s) | 368, 400 |
| FaqI | GGGAC | 1 cut(s) | 427 |
| FatI | CATG | 2 cut(s) | 553, 615 |
| FokI | GGATG | 1 cut(s) | 102 |
| FspBI | CTAG | 2 cut(s) | 359, 638 |
| HaeIII | GGCC | 2 cut(s) | 163, 227 |
| Hin1II | CATG | 2 cut(s) | 557, 619 |
| HinfI | GANTC | 2 cut(s) | 119, 451 |
| HphI | GGTGA | 1 cut(s) | 128 |
| Hpy188I | TCNGA | 3 cut(s) | 28, 136, 309 |
| Hpy188III | TCNNGA | 3 cut(s) | 38, 123, 528 |
| Hpy99I | CGWCG | 1 cut(s) | 650 |
| HpyAV | CCTTC | 2 cut(s) | 65, 260 |
| HpyCH4IV | ACGT | 1 cut(s) | 648 |
| HpyCH4V | TGCA | 2 cut(s) | 4, 293 |
| HpyF10VI | GCNNNNNNNGC | 1 cut(s) | 40 |
| HpyF3I | CTNAG | 2 cut(s) | 74, 222 |
| HpySE526I | ACGT | 1 cut(s) | 648 |
| Hsp92II | CATG | 2 cut(s) | 557, 619 |
| Kzo9I | GATC | 1 cut(s) | 484 |
| LguI | GCTCTTC | 1 cut(s) | 230 |
| LpnPI | CCDG | 4 cut(s) | 174, 241, 430, 633 |
| LweI | GCATC | 1 cut(s) | 43 |
| MaeI | CTAG | 2 cut(s) | 359, 638 |
| MaeII | ACGT | 1 cut(s) | 648 |
| MaeIII | GTNAC | 1 cut(s) | 536 |
| MalI | GATC | 1 cut(s) | 486 |
| MboI | GATC | 1 cut(s) | 484 |
| MboII | GAAGA | 4 cut(s) | 23, 247, 322, 443 |
| MhlI | GDGCHC | 1 cut(s) | 242 |
| MluCI | AATT | 5 cut(s) | 110, 301, 371, 425, 547 |
| MnlI | CCTC | 4 cut(s) | 217, 572, 646, 653 |
| Mph1103I | ATGCAT | 1 cut(s) | 6 |
| MroXI | GAANNNNTTC | 1 cut(s) | 54 |
| MseI | TTAA | 3 cut(s) | 60, 375, 497 |
| MwoI | GCNNNNNNNGC | 1 cut(s) | 40 |
| NdeII | GATC | 1 cut(s) | 484 |
| NlaIII | CATG | 2 cut(s) | 557, 619 |
| NlaIV | GGNNCC | 2 cut(s) | 381, 415 |
| NmuCI | GTSAC | 1 cut(s) | 536 |
| NsiI | ATGCAT | 1 cut(s) | 6 |
| NspI | RCATGY | 2 cut(s) | 557, 619 |
| NspV | TTCGAA | 1 cut(s) | 545 |
| PciSI | GCTCTTC | 1 cut(s) | 230 |
| PdmI | GAANNNNTTC | 1 cut(s) | 54 |
| PfeI | GAWTC | 2 cut(s) | 119, 451 |
| PshAI | GACNNNNGTC | 1 cut(s) | 419 |
| PsiI | TTATAA | 1 cut(s) | 341 |
| PspN4I | GGNNCC | 2 cut(s) | 381, 415 |
| PspPI | GGNCC | 1 cut(s) | 414 |
| RsaI | GTAC | 2 cut(s) | 79, 561 |
| RsaNI | GTAC | 2 cut(s) | 78, 560 |
| SapI | GCTCTTC | 1 cut(s) | 230 |
| SaqAI | TTAA | 3 cut(s) | 60, 375, 497 |
| Sau3AI | GATC | 1 cut(s) | 484 |
| Sau96I | GGNCC | 1 cut(s) | 414 |
| ScaI | AGTACT | 1 cut(s) | 79 |
| SduI | GDGCHC | 1 cut(s) | 242 |
| SetI | ASST | 7 cut(s) | 57, 100, 108, 381, 639, 645, 651 |
| SfaNI | GCATC | 1 cut(s) | 43 |
| SfuI | TTCGAA | 1 cut(s) | 545 |
| SinI | GGWCC | 1 cut(s) | 414 |
| SmlI | CTYRAG | 1 cut(s) | 38 |
| SmoI | CTYRAG | 1 cut(s) | 38 |
| Sse9I | AATT | 5 cut(s) | 110, 301, 371, 425, 547 |
| SsiI | CCGC | 2 cut(s) | 367, 572 |
| SspMI | CTAG | 2 cut(s) | 359, 638 |
| TaiI | ACGT | 1 cut(s) | 651 |
| TaqI | TCGA | 2 cut(s) | 545, 645 |
| TasI | AATT | 5 cut(s) | 110, 301, 371, 425, 547 |
| TatI | WGTACW | 2 cut(s) | 77, 559 |
| TfiI | GAWTC | 2 cut(s) | 119, 451 |
| Tru1I | TTAA | 3 cut(s) | 60, 375, 497 |
| Tru9I | TTAA | 3 cut(s) | 60, 375, 497 |
| TscAI | CASTG | 2 cut(s) | 235, 424 |
| TseFI | GTSAC | 1 cut(s) | 536 |
| Tsp45I | GTSAC | 1 cut(s) | 536 |
| TspDTI | ATGAA | 4 cut(s) | 63, 184, 380, 618 |
| TspRI | CASTG | 2 cut(s) | 235, 424 |
| VpaK11BI | GGWCC | 1 cut(s) | 414 |
| XapI | RAATTY | 2 cut(s) | 110, 425 |
| XceI | RCATGY | 2 cut(s) | 557, 619 |
| XmnI | GAANNNNTTC | 1 cut(s) | 54 |
| XspI | CTAG | 2 cut(s) | 359, 638 |
| ZrmI | AGTACT | 1 cut(s) | 79 |
| Zsp2I | ATGCAT | 1 cut(s) | 6 |