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| Enzyme | Recognition Site | Cut Count | Positions (bp) |
|---|---|---|---|
| AarI | CACCTGC | 1 cut(s) | 713 |
| Acc36I | ACCTGC | 1 cut(s) | 713 |
| AccB1I | GGYRCC | 1 cut(s) | 1137 |
| AccBSI | CCGCTC | 1 cut(s) | 796 |
| AccI | GTMKAC | 1 cut(s) | 1002 |
| AciI | CCGC | 1 cut(s) | 796 |
| AcsI | RAATTY | 3 cut(s) | 6, 414, 1086 |
| AcuI | CTGAAG | 1 cut(s) | 638 |
| AfaI | GTAC | 3 cut(s) | 173, 269, 1072 |
| AfiI | CCNNNNNNNGG | 2 cut(s) | 464, 795 |
| AgsI | TTSAA | 8 cut(s) | 85, 117, 577, 784, 818, 964, 1051, 1193 |
| AjnI | CCWGG | 2 cut(s) | 141, 762 |
| AluBI | AGCT | 6 cut(s) | 121, 137, 238, 499, 842, 1180 |
| AluI | AGCT | 6 cut(s) | 121, 137, 238, 499, 842, 1180 |
| Alw26I | GTCTC | 2 cut(s) | 1143, 1229 |
| ApeKI | GCWGC | 2 cut(s) | 1201, 1204 |
| ApoI | RAATTY | 3 cut(s) | 6, 414, 1086 |
| ArsI | GACNNNNNNTTYG | 2 cut(s) | 423, 455 |
| Asp700I | GAANNNNTTC | 1 cut(s) | 173 |
| AspLEI | GCGC | 1 cut(s) | 470 |
| AspS9I | GGNCC | 2 cut(s) | 245, 728 |
| AsuC2I | CCSGG | 1 cut(s) | 1284 |
| AsuHPI | GGTGA | 2 cut(s) | 319, 1268 |
| AvaII | GGWCC | 2 cut(s) | 245, 728 |
| AxyI | CCTNAGG | 1 cut(s) | 327 |
| BaeGI | GKGCMC | 2 cut(s) | 1047, 1142 |
| BanI | GGYRCC | 1 cut(s) | 1137 |
| BbvI | GCAGC | 2 cut(s) | 1213, 1216 |
| BccI | CCATC | 4 cut(s) | 225, 255, 297, 1234 |
| BciT130I | CCWGG | 2 cut(s) | 143, 764 |
| BciVI | GTATCC | 1 cut(s) | 752 |
| BcnI | CCSGG | 1 cut(s) | 1284 |
| BcoDI | GTCTC | 2 cut(s) | 1143, 1229 |
| BfaI | CTAG | 5 cut(s) | 38, 122, 861, 1181, 1266 |
| BfoI | RGCGCY | 1 cut(s) | 471 |
| BfuAI | ACCTGC | 1 cut(s) | 713 |
| BfuI | GTATCC | 1 cut(s) | 752 |
| BisI | GCNGC | 2 cut(s) | 1202, 1205 |
| BlsI | GCNGC | 2 cut(s) | 1203, 1206 |
| BmcAI | AGTACT | 1 cut(s) | 173 |
| Bme1390I | CCNGG | 3 cut(s) | 143, 764, 1284 |
| Bme18I | GGWCC | 2 cut(s) | 245, 728 |
| BmgT120I | GGNCC | 2 cut(s) | 245, 728 |
| BmiI | GGNNCC | 2 cut(s) | 954, 1139 |
| BmrFI | CCNGG | 3 cut(s) | 143, 764, 1284 |
| BmsI | GCATC | 7 cut(s) | 331, 388, 529, 835, 1002, 1045, 1102 |
| BpuEI | CTTGAG | 2 cut(s) | 185, 1087 |
| BpuMI | CCSGG | 1 cut(s) | 1284 |
| Bsa29I | ATCGAT | 1 cut(s) | 108 |
| BsaJI | CCNNGG | 2 cut(s) | 789, 1156 |
| Bsc4I | CCNNNNNNNGG | 2 cut(s) | 464, 795 |
| Bse118I | RCCGGY | 1 cut(s) | 46 |
| Bse1I | ACTGG | 1 cut(s) | 248 |
| Bse21I | CCTNAGG | 1 cut(s) | 327 |
| Bse3DI | GCAATG | 1 cut(s) | 855 |
| BseBI | CCWGG | 2 cut(s) | 143, 764 |
| BseCI | ATCGAT | 1 cut(s) | 108 |
| BseDI | CCNNGG | 2 cut(s) | 789, 1156 |
| BseGI | GGATG | 6 cut(s) | 270, 308, 322, 544, 1060, 1226 |
| BseLI | CCNNNNNNNGG | 2 cut(s) | 464, 795 |
| BseMI | GCAATG | 1 cut(s) | 855 |
| BseMII | CTCAG | 2 cut(s) | 318, 636 |
| BseNI | ACTGG | 1 cut(s) | 248 |
| BseRI | GAGGAG | 1 cut(s) | 1190 |
| BseSI | GKGCMC | 2 cut(s) | 1047, 1142 |
| BseXI | GCAGC | 2 cut(s) | 1213, 1216 |
| BshNI | GGYRCC | 1 cut(s) | 1137 |
| BshVI | ATCGAT | 1 cut(s) | 108 |
| BsiSI | CCGG | 2 cut(s) | 47, 1284 |
| BslI | CCNNNNNNNGG | 2 cut(s) | 464, 795 |
| BsmAI | GTCTC | 2 cut(s) | 1143, 1229 |
| Bsp1286I | GDGCHC | 2 cut(s) | 1047, 1142 |
| Bsp143I | GATC | 1 cut(s) | 105 |
| BspACI | CCGC | 1 cut(s) | 796 |
| BspCNI | CTCAG | 2 cut(s) | 319, 637 |
| BspDI | ATCGAT | 1 cut(s) | 108 |
| BspHI | TCATGA | 1 cut(s) | 198 |
| BspLI | GGNNCC | 2 cut(s) | 954, 1139 |
| BspMI | ACCTGC | 1 cut(s) | 713 |
| BspT107I | GGYRCC | 1 cut(s) | 1137 |
| BsrBI | CCGCTC | 1 cut(s) | 796 |
| BsrDI | GCAATG | 1 cut(s) | 855 |
| BsrFI | RCCGGY | 1 cut(s) | 46 |
| BsrI | ACTGG | 1 cut(s) | 248 |
| BssAI | RCCGGY | 1 cut(s) | 46 |
| BssECI | CCNNGG | 2 cut(s) | 789, 1156 |
| BssMI | GATC | 1 cut(s) | 105 |
| BssT1I | CCWWGG | 2 cut(s) | 789, 1156 |
| Bst2UI | CCWGG | 2 cut(s) | 143, 764 |
| Bst4CI | ACNGT | 6 cut(s) | 154, 214, 439, 824, 908, 1319 |
| Bst6I | CTCTTC | 1 cut(s) | 354 |
| BstC8I | GCNNGC | 5 cut(s) | 135, 161, 320, 720, 840 |
| BstDEI | CTNAG | 3 cut(s) | 327, 591, 645 |
| BstF5I | GGATG | 6 cut(s) | 270, 308, 322, 544, 1060, 1226 |
| BstH2I | RGCGCY | 1 cut(s) | 471 |
| BstHHI | GCGC | 1 cut(s) | 470 |
| BstKTI | GATC | 1 cut(s) | 108 |
| BstMAI | GTCTC | 2 cut(s) | 1143, 1229 |
| BstMBI | GATC | 1 cut(s) | 105 |
| BstMWI | GCNNNNNNNGC | 1 cut(s) | 407 |
| BstNI | CCWGG | 2 cut(s) | 143, 764 |
| BstSCI | CCNGG | 3 cut(s) | 141, 762, 1282 |
| BstSLI | GKGCMC | 2 cut(s) | 1047, 1142 |
| BstV1I | GCAGC | 2 cut(s) | 1213, 1216 |
| BstXI | CCANNNNNNTGG | 1 cut(s) | 770 |
| Bsu15I | ATCGAT | 1 cut(s) | 108 |
| Bsu36I | CCTNAGG | 1 cut(s) | 327 |
| BsuI | GTATCC | 1 cut(s) | 752 |
| BsuTUI | ATCGAT | 1 cut(s) | 108 |
| BtsCI | GGATG | 6 cut(s) | 270, 308, 322, 544, 1060, 1226 |
| BtsIMutI | CAGTG | 2 cut(s) | 555, 829 |
| BveI | ACCTGC | 1 cut(s) | 713 |
| Cac8I | GCNNGC | 5 cut(s) | 135, 161, 320, 720, 840 |
| CciI | TCATGA | 1 cut(s) | 198 |
| CfoI | GCGC | 1 cut(s) | 470 |
| Cfr10I | RCCGGY | 1 cut(s) | 46 |
| Cfr13I | GGNCC | 2 cut(s) | 245, 728 |
| ClaI | ATCGAT | 1 cut(s) | 108 |
| CsiI | ACCWGGT | 2 cut(s) | 141, 762 |
| Csp6I | GTAC | 3 cut(s) | 172, 268, 1071 |
| CviAII | CATG | 6 cut(s) | 199, 286, 475, 679, 1076, 1325 |
| CviQI | GTAC | 3 cut(s) | 172, 268, 1071 |
| DdeI | CTNAG | 3 cut(s) | 327, 591, 645 |
| DpnI | GATC | 1 cut(s) | 107 |
| DpnII | GATC | 1 cut(s) | 105 |
| DraI | TTTAAA | 1 cut(s) | 298 |
| Eam1104I | CTCTTC | 1 cut(s) | 354 |
| EarI | CTCTTC | 1 cut(s) | 354 |
| Eco130I | CCWWGG | 2 cut(s) | 789, 1156 |
| Eco32I | GATATC | 1 cut(s) | 480 |
| Eco47I | GGWCC | 2 cut(s) | 245, 728 |
| Eco57I | CTGAAG | 1 cut(s) | 638 |
| Eco81I | CCTNAGG | 1 cut(s) | 327 |
| EcoRI | GAATTC | 1 cut(s) | 414 |
| EcoRII | CCWGG | 2 cut(s) | 141, 762 |
| EcoRV | GATATC | 1 cut(s) | 480 |
| EcoT14I | CCWWGG | 2 cut(s) | 789, 1156 |
| ErhI | CCWWGG | 2 cut(s) | 789, 1156 |
| FaeI | CATG | 6 cut(s) | 202, 289, 478, 682, 1079, 1328 |
| FalI | AAGNNNNNCTT | 6 cut(s) | 498, 530, 1043, 1075, 1092, 1124 |
| FatI | CATG | 6 cut(s) | 198, 285, 474, 678, 1075, 1324 |
| FauI | CCCGC | 1 cut(s) | 789 |
| FblI | GTMKAC | 1 cut(s) | 1002 |
| Fnu4HI | GCNGC | 2 cut(s) | 1202, 1205 |
| FokI | GGATG | 6 cut(s) | 277, 309, 315, 551, 1067, 1213 |
| Fsp4HI | GCNGC | 2 cut(s) | 1202, 1205 |
| FspBI | CTAG | 5 cut(s) | 38, 122, 861, 1181, 1266 |
| GlaI | GCGC | 1 cut(s) | 469 |
| GluI | GCNGC | 2 cut(s) | 1202, 1205 |
| HaeII | RGCGCY | 1 cut(s) | 471 |
| HapII | CCGG | 2 cut(s) | 47, 1284 |
| HhaI | GCGC | 1 cut(s) | 470 |
| Hin1II | CATG | 6 cut(s) | 202, 289, 478, 682, 1079, 1328 |
| Hin6I | GCGC | 1 cut(s) | 468 |
| HinP1I | GCGC | 1 cut(s) | 468 |
| HinfI | GANTC | 2 cut(s) | 202, 828 |
| HpaII | CCGG | 2 cut(s) | 47, 1284 |
| HphI | GGTGA | 2 cut(s) | 319, 1268 |
| Hpy166II | GTNNAC | 4 cut(s) | 728, 1003, 1017, 1322 |
| Hpy188I | TCNGA | 2 cut(s) | 703, 957 |
| Hpy188III | TCNNGA | 8 cut(s) | 38, 199, 277, 326, 419, 598, 1066, 1109 |
| Hpy8I | GTNNAC | 4 cut(s) | 728, 1003, 1017, 1322 |
| HpyAV | CCTTC | 5 cut(s) | 192, 283, 613, 1045, 1286 |
| HpyCH4III | ACNGT | 6 cut(s) | 154, 214, 439, 824, 908, 1319 |
| HpyCH4IV | ACGT | 1 cut(s) | 385 |
| HpyF10VI | GCNNNNNNNGC | 1 cut(s) | 407 |
| HpyF3I | CTNAG | 3 cut(s) | 327, 591, 645 |
| HpySE526I | ACGT | 1 cut(s) | 385 |
| Hsp92II | CATG | 6 cut(s) | 202, 289, 478, 682, 1079, 1328 |
| HspAI | GCGC | 1 cut(s) | 468 |
| Kzo9I | GATC | 1 cut(s) | 105 |
| LmnI | GCTCC | 3 cut(s) | 496, 793, 1177 |
| Lsp1109I | GCAGC | 2 cut(s) | 1213, 1216 |
| LweI | GCATC | 7 cut(s) | 331, 388, 529, 835, 1002, 1045, 1102 |
| MabI | ACCWGGT | 2 cut(s) | 141, 762 |
| MaeI | CTAG | 5 cut(s) | 38, 122, 861, 1181, 1266 |
| MaeII | ACGT | 1 cut(s) | 385 |
| MaeIII | GTNAC | 2 cut(s) | 148, 347 |
| MalI | GATC | 1 cut(s) | 107 |
| MbiI | CCGCTC | 1 cut(s) | 796 |
| MboI | GATC | 1 cut(s) | 105 |
| MboII | GAAGA | 3 cut(s) | 73, 371, 1181 |
| MhlI | GDGCHC | 2 cut(s) | 1047, 1142 |
| MluCI | AATT | 4 cut(s) | 6, 414, 569, 1086 |
| MlyI | GAGTC | 1 cut(s) | 837 |
| MmeI | TCCRAC | 1 cut(s) | 912 |
| MnlI | CCTC | 8 cut(s) | 322, 355, 529, 654, 705, 1116, 1168, 1177 |
| MroXI | GAANNNNTTC | 1 cut(s) | 173 |
| MseI | TTAA | 6 cut(s) | 209, 234, 297, 653, 768, 1212 |
| MslI | CAYNNNNRTG | 2 cut(s) | 290, 516 |
| MspI | CCGG | 2 cut(s) | 47, 1284 |
| MspR9I | CCNGG | 3 cut(s) | 143, 764, 1284 |
| MvaI | CCWGG | 2 cut(s) | 143, 764 |
| MwoI | GCNNNNNNNGC | 1 cut(s) | 407 |
| NciI | CCSGG | 1 cut(s) | 1284 |
| NdeII | GATC | 1 cut(s) | 105 |
| NlaIII | CATG | 6 cut(s) | 202, 289, 478, 682, 1079, 1328 |
| NlaIV | GGNNCC | 2 cut(s) | 954, 1139 |
| PagI | TCATGA | 1 cut(s) | 198 |
| PaqCI | CACCTGC | 1 cut(s) | 713 |
| PdmI | GAANNNNTTC | 1 cut(s) | 173 |
| PfeI | GAWTC | 1 cut(s) | 202 |
| PkrI | GCNGC | 2 cut(s) | 1203, 1206 |
| PleI | GAGTC | 1 cut(s) | 836 |
| PpsI | GAGTC | 1 cut(s) | 836 |
| Psp6I | CCWGG | 2 cut(s) | 141, 762 |
| PspGI | CCWGG | 2 cut(s) | 141, 762 |
| PspN4I | GGNNCC | 2 cut(s) | 954, 1139 |
| PspPI | GGNCC | 2 cut(s) | 245, 728 |
| RsaI | GTAC | 3 cut(s) | 173, 269, 1072 |
| RsaNI | GTAC | 3 cut(s) | 172, 268, 1071 |
| RseI | CAYNNNNRTG | 2 cut(s) | 290, 516 |
| SaqAI | TTAA | 6 cut(s) | 209, 234, 297, 653, 768, 1212 |
| SatI | GCNGC | 2 cut(s) | 1202, 1205 |
| Sau3AI | GATC | 1 cut(s) | 105 |
| Sau96I | GGNCC | 2 cut(s) | 245, 728 |
| ScaI | AGTACT | 1 cut(s) | 173 |
| SchI | GAGTC | 1 cut(s) | 837 |
| ScrFI | CCNGG | 3 cut(s) | 143, 764, 1284 |
| SduI | GDGCHC | 2 cut(s) | 1047, 1142 |
| SexAI | ACCWGGT | 2 cut(s) | 141, 762 |
| SfaNI | GCATC | 7 cut(s) | 331, 388, 529, 835, 1002, 1045, 1102 |
| SinI | GGWCC | 2 cut(s) | 245, 728 |
| SmiMI | CAYNNNNRTG | 2 cut(s) | 290, 516 |
| SmlI | CTYRAG | 2 cut(s) | 164, 1066 |
| SmoI | CTYRAG | 2 cut(s) | 164, 1066 |
| Sse9I | AATT | 4 cut(s) | 6, 414, 569, 1086 |
| SsiI | CCGC | 1 cut(s) | 796 |
| SspMI | CTAG | 5 cut(s) | 38, 122, 861, 1181, 1266 |
| StyD4I | CCNGG | 3 cut(s) | 141, 762, 1282 |
| StyI | CCWWGG | 2 cut(s) | 789, 1156 |
| TaaI | ACNGT | 6 cut(s) | 154, 214, 439, 824, 908, 1319 |
| TaiI | ACGT | 1 cut(s) | 388 |
| TaqI | TCGA | 7 cut(s) | 108, 192, 259, 276, 357, 599, 1197 |
| TasI | AATT | 4 cut(s) | 6, 414, 569, 1086 |
| TatI | WGTACW | 1 cut(s) | 171 |
| TfiI | GAWTC | 1 cut(s) | 202 |
| Tru1I | TTAA | 6 cut(s) | 209, 234, 297, 653, 768, 1212 |
| Tru9I | TTAA | 6 cut(s) | 209, 234, 297, 653, 768, 1212 |
| TscAI | CASTG | 2 cut(s) | 562, 829 |
| TseI | GCWGC | 2 cut(s) | 1201, 1204 |
| TspDTI | ATGAA | 8 cut(s) | 194, 302, 687, 753, 1182, 1275, 1305, 1326 |
| TspGWI | ACGGA | 2 cut(s) | 431, 548 |
| TspRI | CASTG | 2 cut(s) | 562, 829 |
| VpaK11BI | GGWCC | 2 cut(s) | 245, 728 |
| XapI | RAATTY | 3 cut(s) | 6, 414, 1086 |
| XbaI | TCTAGA | 1 cut(s) | 37 |
| XmiI | GTMKAC | 1 cut(s) | 1002 |
| XmnI | GAANNNNTTC | 1 cut(s) | 173 |
| XspI | CTAG | 5 cut(s) | 38, 122, 861, 1181, 1266 |
| ZrmI | AGTACT | 1 cut(s) | 173 |