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| Enzyme | Recognition Site | Cut Count | Positions (bp) |
|---|---|---|---|
| Acc16I | TGCGCA | 1 cut(s) | 1062 |
| AccB7I | CCANNNNNTGG | 1 cut(s) | 885 |
| AccBSI | CCGCTC | 1 cut(s) | 511 |
| AccII | CGCG | 1 cut(s) | 1028 |
| AciI | CCGC | 5 cut(s) | 511, 829, 962, 1026, 1115 |
| AclWI | GGATC | 2 cut(s) | 328, 371 |
| AcoI | YGGCCR | 1 cut(s) | 534 |
| AcsI | RAATTY | 2 cut(s) | 900, 1185 |
| AcuI | CTGAAG | 2 cut(s) | 1053, 1068 |
| AdeI | CACNNNGTG | 1 cut(s) | 871 |
| AfaI | GTAC | 9 cut(s) | 101, 137, 239, 477, 518, 802, 912, 923, 1137 |
| AfiI | CCNNNNNNNGG | 3 cut(s) | 496, 602, 885 |
| AflIII | ACRYGT | 1 cut(s) | 519 |
| AgsI | TTSAA | 6 cut(s) | 164, 694, 719, 1105, 1147, 1175 |
| AluBI | AGCT | 6 cut(s) | 74, 442, 937, 1046, 1100, 1222 |
| AluI | AGCT | 6 cut(s) | 74, 442, 937, 1046, 1100, 1222 |
| Alw26I | GTCTC | 3 cut(s) | 191, 990, 1165 |
| AlwI | GGATC | 2 cut(s) | 328, 371 |
| Ama87I | CYCGRG | 1 cut(s) | 671 |
| AoxI | GGCC | 2 cut(s) | 400, 534 |
| ApeKI | GCWGC | 3 cut(s) | 58, 253, 934 |
| ApoI | RAATTY | 2 cut(s) | 900, 1185 |
| AspLEI | GCGC | 3 cut(s) | 29, 1030, 1063 |
| AspS9I | GGNCC | 1 cut(s) | 655 |
| AsuC2I | CCSGG | 2 cut(s) | 53, 141 |
| AsuHPI | GGTGA | 2 cut(s) | 788, 1066 |
| AvaI | CYCGRG | 1 cut(s) | 671 |
| AvaII | GGWCC | 1 cut(s) | 655 |
| BaeI | ACNNNNGTAYC | 2 cut(s) | 467, 500 |
| BanII | GRGCYC | 1 cut(s) | 678 |
| BauI | CACGAG | 1 cut(s) | 1064 |
| BbsI | GAAGAC | 3 cut(s) | 263, 516, 707 |
| BbvI | GCAGC | 3 cut(s) | 70, 240, 946 |
| BccI | CCATC | 3 cut(s) | 166, 543, 879 |
| BceAI | ACGGC | 1 cut(s) | 549 |
| BciVI | GTATCC | 1 cut(s) | 723 |
| BclI | TGATCA | 1 cut(s) | 817 |
| BcnI | CCSGG | 2 cut(s) | 53, 141 |
| BcoDI | GTCTC | 3 cut(s) | 191, 990, 1165 |
| BfaI | CTAG | 4 cut(s) | 69, 1164, 1223, 1237 |
| BfmI | CTRYAG | 2 cut(s) | 233, 450 |
| BfuI | GTATCC | 1 cut(s) | 723 |
| BglII | AGATCT | 1 cut(s) | 310 |
| BisI | GCNGC | 4 cut(s) | 59, 254, 935, 963 |
| BlpI | GCTNAGC | 1 cut(s) | 938 |
| BlsI | GCNGC | 4 cut(s) | 60, 255, 936, 964 |
| BmcAI | AGTACT | 1 cut(s) | 912 |
| Bme1390I | CCNGG | 2 cut(s) | 53, 141 |
| Bme18I | GGWCC | 1 cut(s) | 655 |
| BmeT110I | CYCGRG | 1 cut(s) | 671 |
| BmgT120I | GGNCC | 1 cut(s) | 655 |
| BmrFI | CCNGG | 2 cut(s) | 53, 141 |
| BmsI | GCATC | 1 cut(s) | 240 |
| BoxI | GACNNNNGTC | 1 cut(s) | 411 |
| BpiI | GAAGAC | 3 cut(s) | 263, 516, 707 |
| BpmI | CTGGAG | 1 cut(s) | 527 |
| Bpu10I | CCTNAGC | 1 cut(s) | 746 |
| Bpu1102I | GCTNAGC | 1 cut(s) | 938 |
| BpuEI | CTTGAG | 1 cut(s) | 15 |
| BpuMI | CCSGG | 2 cut(s) | 53, 141 |
| Bsa29I | ATCGAT | 1 cut(s) | 206 |
| BsaBI | GATNNNNATC | 1 cut(s) | 228 |
| BsaJI | CCNNGG | 3 cut(s) | 139, 259, 394 |
| BsaXI | ACNNNNNCTCC | 4 cut(s) | 500, 530, 751, 781 |
| Bsc4I | CCNNNNNNNGG | 3 cut(s) | 496, 602, 885 |
| Bse118I | RCCGGY | 1 cut(s) | 1126 |
| Bse1I | ACTGG | 1 cut(s) | 416 |
| Bse3DI | GCAATG | 1 cut(s) | 1227 |
| Bse8I | GATNNNNATC | 1 cut(s) | 228 |
| BseCI | ATCGAT | 1 cut(s) | 206 |
| BseDI | CCNNGG | 3 cut(s) | 139, 259, 394 |
| BseGI | GGATG | 3 cut(s) | 680, 946, 1043 |
| BseJI | GATNNNNATC | 1 cut(s) | 228 |
| BseLI | CCNNNNNNNGG | 3 cut(s) | 496, 602, 885 |
| BseMI | GCAATG | 1 cut(s) | 1227 |
| BseMII | CTCAG | 1 cut(s) | 952 |
| BseNI | ACTGG | 1 cut(s) | 416 |
| BseX3I | CGGCCG | 1 cut(s) | 534 |
| BseXI | GCAGC | 3 cut(s) | 70, 240, 946 |
| BsgI | GTGCAG | 1 cut(s) | 77 |
| Bsh1236I | CGCG | 1 cut(s) | 1028 |
| Bsh1285I | CGRYCG | 2 cut(s) | 210, 537 |
| BshFI | GGCC | 2 cut(s) | 402, 536 |
| BshVI | ATCGAT | 1 cut(s) | 206 |
| BsiEI | CGRYCG | 2 cut(s) | 210, 537 |
| BsiHKCI | CYCGRG | 1 cut(s) | 671 |
| BsiSI | CCGG | 3 cut(s) | 53, 141, 1127 |
| BslI | CCNNNNNNNGG | 3 cut(s) | 496, 602, 885 |
| BsmAI | GTCTC | 3 cut(s) | 191, 990, 1165 |
| BsnI | GGCC | 2 cut(s) | 402, 536 |
| BsoBI | CYCGRG | 1 cut(s) | 671 |
| Bsp1286I | GDGCHC | 1 cut(s) | 678 |
| Bsp1407I | TGTACA | 1 cut(s) | 516 |
| Bsp143I | GATC | 5 cut(s) | 207, 310, 333, 376, 817 |
| Bsp1720I | GCTNAGC | 1 cut(s) | 938 |
| BspACI | CCGC | 5 cut(s) | 511, 829, 962, 1026, 1115 |
| BspANI | GGCC | 2 cut(s) | 402, 536 |
| BspCNI | CTCAG | 1 cut(s) | 951 |
| BspDI | ATCGAT | 1 cut(s) | 206 |
| BspFNI | CGCG | 1 cut(s) | 1028 |
| BspMAI | CTGCAG | 1 cut(s) | 454 |
| BspPI | GGATC | 2 cut(s) | 328, 371 |
| BsrBI | CCGCTC | 1 cut(s) | 511 |
| BsrDI | GCAATG | 1 cut(s) | 1227 |
| BsrFI | RCCGGY | 1 cut(s) | 1126 |
| BsrGI | TGTACA | 1 cut(s) | 516 |
| BsrI | ACTGG | 1 cut(s) | 416 |
| BssAI | RCCGGY | 1 cut(s) | 1126 |
| BssECI | CCNNGG | 3 cut(s) | 139, 259, 394 |
| BssMI | GATC | 5 cut(s) | 207, 310, 333, 376, 817 |
| BssSI | CACGAG | 1 cut(s) | 1064 |
| BssT1I | CCWWGG | 1 cut(s) | 394 |
| Bst2BI | CACGAG | 1 cut(s) | 1064 |
| Bst4CI | ACNGT | 8 cut(s) | 39, 157, 237, 263, 767, 800, 859, 869 |
| Bst6I | CTCTTC | 1 cut(s) | 368 |
| BstAPI | GCANNNNNTGC | 2 cut(s) | 1058, 1123 |
| BstAUI | TGTACA | 1 cut(s) | 516 |
| BstC8I | GCNNGC | 4 cut(s) | 343, 454, 555, 1212 |
| BstDEI | CTNAG | 2 cut(s) | 746, 938 |
| BstDSI | CCRYGG | 1 cut(s) | 259 |
| BstEII | GGTNACC | 1 cut(s) | 794 |
| BstF5I | GGATG | 3 cut(s) | 680, 946, 1043 |
| BstFNI | CGCG | 1 cut(s) | 1028 |
| BstHHI | GCGC | 3 cut(s) | 29, 1030, 1063 |
| BstKTI | GATC | 5 cut(s) | 210, 313, 336, 379, 820 |
| BstMAI | GTCTC | 3 cut(s) | 191, 990, 1165 |
| BstMBI | GATC | 5 cut(s) | 207, 310, 333, 376, 817 |
| BstMCI | CGRYCG | 2 cut(s) | 210, 537 |
| BstMWI | GCNNNNNNNGC | 2 cut(s) | 1058, 1123 |
| BstNSI | RCATGY | 2 cut(s) | 345, 523 |
| BstPAI | GACNNNNGTC | 1 cut(s) | 411 |
| BstPI | GGTNACC | 1 cut(s) | 794 |
| BstSCI | CCNGG | 2 cut(s) | 51, 139 |
| BstSFI | CTRYAG | 2 cut(s) | 233, 450 |
| BstUI | CGCG | 1 cut(s) | 1028 |
| BstV1I | GCAGC | 3 cut(s) | 70, 240, 946 |
| BstV2I | GAAGAC | 3 cut(s) | 263, 516, 707 |
| BstX2I | RGATCY | 3 cut(s) | 310, 333, 376 |
| BstYI | RGATCY | 3 cut(s) | 310, 333, 376 |
| BstZI | CGGCCG | 1 cut(s) | 534 |
| Bsu15I | ATCGAT | 1 cut(s) | 206 |
| BsuI | GTATCC | 1 cut(s) | 723 |
| BsuRI | GGCC | 2 cut(s) | 402, 536 |
| BsuTUI | ATCGAT | 1 cut(s) | 206 |
| BtgI | CCRYGG | 1 cut(s) | 259 |
| BtgZI | GCGATG | 1 cut(s) | 765 |
| BtsCI | GGATG | 3 cut(s) | 680, 946, 1043 |
| BtsI | GCAGTG | 2 cut(s) | 81, 240 |
| BtsIMutI | CAGTG | 3 cut(s) | 81, 240, 426 |
| Cac8I | GCNNGC | 4 cut(s) | 343, 454, 555, 1212 |
| CfoI | GCGC | 3 cut(s) | 29, 1030, 1063 |
| Cfr10I | RCCGGY | 1 cut(s) | 1126 |
| Cfr13I | GGNCC | 1 cut(s) | 655 |
| ClaI | ATCGAT | 1 cut(s) | 206 |
| CseI | GACGC | 2 cut(s) | 636, 1060 |
| Csp6I | GTAC | 9 cut(s) | 100, 136, 238, 476, 517, 801, 911, 922, 1136 |
| CviAII | CATG | 7 cut(s) | 338, 342, 520, 572, 709, 1081, 1123 |
| CviQI | GTAC | 9 cut(s) | 100, 136, 238, 476, 517, 801, 911, 922, 1136 |
| DdeI | CTNAG | 2 cut(s) | 746, 938 |
| DpnI | GATC | 5 cut(s) | 209, 312, 335, 378, 819 |
| DpnII | GATC | 5 cut(s) | 207, 310, 333, 376, 817 |
| DraIII | CACNNNGTG | 1 cut(s) | 871 |
| EaeI | YGGCCR | 1 cut(s) | 534 |
| EagI | CGGCCG | 1 cut(s) | 534 |
| Eam1104I | CTCTTC | 1 cut(s) | 368 |
| EarI | CTCTTC | 1 cut(s) | 368 |
| EclXI | CGGCCG | 1 cut(s) | 534 |
| Eco130I | CCWWGG | 1 cut(s) | 394 |
| Eco24I | GRGCYC | 1 cut(s) | 678 |
| Eco47I | GGWCC | 1 cut(s) | 655 |
| Eco52I | CGGCCG | 1 cut(s) | 534 |
| Eco57I | CTGAAG | 2 cut(s) | 1053, 1068 |
| Eco88I | CYCGRG | 1 cut(s) | 671 |
| Eco91I | GGTNACC | 1 cut(s) | 794 |
| EcoO65I | GGTNACC | 1 cut(s) | 794 |
| EcoT14I | CCWWGG | 1 cut(s) | 394 |
| EcoT22I | ATGCAT | 1 cut(s) | 343 |
| EcoT38I | GRGCYC | 1 cut(s) | 678 |
| ErhI | CCWWGG | 1 cut(s) | 394 |
| FaeI | CATG | 7 cut(s) | 341, 345, 523, 575, 712, 1084, 1126 |
| FatI | CATG | 7 cut(s) | 337, 341, 519, 571, 708, 1080, 1122 |
| FauNDI | CATATG | 1 cut(s) | 814 |
| FbaI | TGATCA | 1 cut(s) | 817 |
| Fnu4HI | GCNGC | 4 cut(s) | 59, 254, 935, 963 |
| FokI | GGATG | 3 cut(s) | 667, 933, 1050 |
| FriOI | GRGCYC | 1 cut(s) | 678 |
| Fsp4HI | GCNGC | 4 cut(s) | 59, 254, 935, 963 |
| FspBI | CTAG | 4 cut(s) | 69, 1164, 1223, 1237 |
| FspI | TGCGCA | 1 cut(s) | 1062 |
| GlaI | GCGC | 3 cut(s) | 28, 1029, 1062 |
| GluI | GCNGC | 4 cut(s) | 59, 254, 935, 963 |
| GsuI | CTGGAG | 1 cut(s) | 527 |
| HaeIII | GGCC | 2 cut(s) | 402, 536 |
| HapII | CCGG | 3 cut(s) | 53, 141, 1127 |
| HgaI | GACGC | 2 cut(s) | 636, 1060 |
| HhaI | GCGC | 3 cut(s) | 29, 1030, 1063 |
| Hin1II | CATG | 7 cut(s) | 341, 345, 523, 575, 712, 1084, 1126 |
| Hin6I | GCGC | 3 cut(s) | 27, 1028, 1061 |
| HinP1I | GCGC | 3 cut(s) | 27, 1028, 1061 |
| HinfI | GANTC | 3 cut(s) | 445, 712, 1196 |
| HpaII | CCGG | 3 cut(s) | 53, 141, 1127 |
| HphI | GGTGA | 2 cut(s) | 788, 1066 |
| Hpy166II | GTNNAC | 2 cut(s) | 136, 240 |
| Hpy188I | TCNGA | 6 cut(s) | 49, 150, 296, 652, 659, 685 |
| Hpy188III | TCNNGA | 6 cut(s) | 161, 211, 304, 331, 380, 821 |
| Hpy8I | GTNNAC | 2 cut(s) | 136, 240 |
| Hpy99I | CGWCG | 1 cut(s) | 689 |
| HpyAV | CCTTC | 7 cut(s) | 73, 208, 377, 466, 818, 1028, 1099 |
| HpyCH4III | ACNGT | 8 cut(s) | 39, 157, 237, 263, 767, 800, 859, 869 |
| HpyCH4IV | ACGT | 1 cut(s) | 408 |
| HpyCH4V | TGCA | 7 cut(s) | 58, 341, 345, 452, 571, 786, 1210 |
| HpyF10VI | GCNNNNNNNGC | 2 cut(s) | 1058, 1123 |
| HpyF3I | CTNAG | 2 cut(s) | 746, 938 |
| HpySE526I | ACGT | 1 cut(s) | 408 |
| Hsp92II | CATG | 7 cut(s) | 341, 345, 523, 575, 712, 1084, 1126 |
| HspAI | GCGC | 3 cut(s) | 27, 1028, 1061 |
| Ksp22I | TGATCA | 1 cut(s) | 817 |
| Kzo9I | GATC | 5 cut(s) | 207, 310, 333, 376, 817 |
| LmnI | GCTCC | 3 cut(s) | 508, 759, 1097 |
| Lsp1109I | GCAGC | 3 cut(s) | 70, 240, 946 |
| LweI | GCATC | 1 cut(s) | 240 |
| MaeI | CTAG | 4 cut(s) | 69, 1164, 1223, 1237 |
| MaeII | ACGT | 1 cut(s) | 408 |
| MaeIII | GTNAC | 4 cut(s) | 422, 794, 853, 1072 |
| MalI | GATC | 5 cut(s) | 209, 312, 335, 378, 819 |
| MbiI | CCGCTC | 1 cut(s) | 511 |
| MboI | GATC | 5 cut(s) | 207, 310, 333, 376, 817 |
| MboII | GAAGA | 9 cut(s) | 196, 263, 355, 516, 590, 707, 790, 894, 908 |
| MflI | RGATCY | 3 cut(s) | 310, 333, 376 |
| MhlI | GDGCHC | 1 cut(s) | 678 |
| MluCI | AATT | 3 cut(s) | 566, 900, 1185 |
| MlyI | GAGTC | 3 cut(s) | 439, 721, 1190 |
| MmeI | TCCRAC | 2 cut(s) | 145, 708 |
| MnlI | CCTC | 7 cut(s) | 489, 601, 646, 648, 660, 748, 885 |
| Mph1103I | ATGCAT | 1 cut(s) | 343 |
| MseI | TTAA | 2 cut(s) | 189, 915 |
| MslI | CAYNNNNRTG | 1 cut(s) | 1079 |
| MspI | CCGG | 3 cut(s) | 53, 141, 1127 |
| MspR9I | CCNGG | 2 cut(s) | 53, 141 |
| MvnI | CGCG | 1 cut(s) | 1028 |
| MwoI | GCNNNNNNNGC | 2 cut(s) | 1058, 1123 |
| NciI | CCSGG | 2 cut(s) | 53, 141 |
| NdeI | CATATG | 1 cut(s) | 814 |
| NdeII | GATC | 5 cut(s) | 207, 310, 333, 376, 817 |
| NlaIII | CATG | 7 cut(s) | 341, 345, 523, 575, 712, 1084, 1126 |
| NmuCI | GTSAC | 4 cut(s) | 422, 794, 853, 1072 |
| NsbI | TGCGCA | 1 cut(s) | 1062 |
| NsiI | ATGCAT | 1 cut(s) | 343 |
| NspI | RCATGY | 2 cut(s) | 345, 523 |
| PaeI | GCATGC | 1 cut(s) | 345 |
| PciI | ACATGT | 1 cut(s) | 519 |
| PflMI | CCANNNNNTGG | 1 cut(s) | 885 |
| PkrI | GCNGC | 4 cut(s) | 60, 255, 936, 964 |
| Ple19I | CGATCG | 1 cut(s) | 210 |
| PleI | GAGTC | 3 cut(s) | 439, 720, 1190 |
| PpsI | GAGTC | 3 cut(s) | 439, 720, 1190 |
| PscI | ACATGT | 1 cut(s) | 519 |
| PshAI | GACNNNNGTC | 1 cut(s) | 411 |
| PspEI | GGTNACC | 1 cut(s) | 794 |
| PspPI | GGNCC | 1 cut(s) | 655 |
| PstI | CTGCAG | 1 cut(s) | 454 |
| PsuI | RGATCY | 3 cut(s) | 310, 333, 376 |
| PvuI | CGATCG | 1 cut(s) | 210 |
| RsaI | GTAC | 9 cut(s) | 101, 137, 239, 477, 518, 802, 912, 923, 1137 |
| RsaNI | GTAC | 9 cut(s) | 100, 136, 238, 476, 517, 801, 911, 922, 1136 |
| RseI | CAYNNNNRTG | 1 cut(s) | 1079 |
| SaqAI | TTAA | 2 cut(s) | 189, 915 |
| SatI | GCNGC | 4 cut(s) | 59, 254, 935, 963 |
| Sau3AI | GATC | 5 cut(s) | 207, 310, 333, 376, 817 |
| Sau96I | GGNCC | 1 cut(s) | 655 |
| SbfI | CCTGCAGG | 1 cut(s) | 454 |
| ScaI | AGTACT | 1 cut(s) | 912 |
| SchI | GAGTC | 3 cut(s) | 439, 721, 1190 |
| ScrFI | CCNGG | 2 cut(s) | 53, 141 |
| SdaI | CCTGCAGG | 1 cut(s) | 454 |
| SduI | GDGCHC | 1 cut(s) | 678 |
| SfaNI | GCATC | 1 cut(s) | 240 |
| SfcI | CTRYAG | 2 cut(s) | 233, 450 |
| SinI | GGWCC | 1 cut(s) | 655 |
| SmiMI | CAYNNNNRTG | 1 cut(s) | 1079 |
| SmlI | CTYRAG | 1 cut(s) | 30 |
| SmoI | CTYRAG | 1 cut(s) | 30 |
| SphI | GCATGC | 1 cut(s) | 345 |
| Sse8387I | CCTGCAGG | 1 cut(s) | 454 |
| Sse9I | AATT | 3 cut(s) | 566, 900, 1185 |
| SsiI | CCGC | 5 cut(s) | 511, 829, 962, 1026, 1115 |
| SspI | AATATT | 1 cut(s) | 955 |
| SspMI | CTAG | 4 cut(s) | 69, 1164, 1223, 1237 |
| StyD4I | CCNGG | 2 cut(s) | 51, 139 |
| StyI | CCWWGG | 1 cut(s) | 394 |
| TaaI | ACNGT | 8 cut(s) | 39, 157, 237, 263, 767, 800, 859, 869 |
| TaiI | ACGT | 1 cut(s) | 411 |
| TaqI | TCGA | 3 cut(s) | 206, 248, 834 |
| TasI | AATT | 3 cut(s) | 566, 900, 1185 |
| TatI | WGTACW | 4 cut(s) | 99, 237, 516, 910 |
| TauI | GCSGC | 1 cut(s) | 965 |
| Tru1I | TTAA | 2 cut(s) | 189, 915 |
| Tru9I | TTAA | 2 cut(s) | 189, 915 |
| TscAI | CASTG | 3 cut(s) | 88, 247, 433 |
| TseFI | GTSAC | 4 cut(s) | 422, 794, 853, 1072 |
| TseI | GCWGC | 3 cut(s) | 58, 253, 934 |
| Tsp45I | GTSAC | 4 cut(s) | 422, 794, 853, 1072 |
| TspDTI | ATGAA | 3 cut(s) | 197, 852, 1097 |
| TspRI | CASTG | 3 cut(s) | 88, 247, 433 |
| Van91I | CCANNNNNTGG | 1 cut(s) | 885 |
| VpaK11BI | GGWCC | 1 cut(s) | 655 |
| XapI | RAATTY | 2 cut(s) | 900, 1185 |
| XceI | RCATGY | 2 cut(s) | 345, 523 |
| XspI | CTAG | 4 cut(s) | 69, 1164, 1223, 1237 |
| ZrmI | AGTACT | 1 cut(s) | 912 |
| Zsp2I | ATGCAT | 1 cut(s) | 343 |